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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147798 (36 seq.)
>A171000223
CP000855
Euryarchaeota
Thermococcus onnurineus NA1 [CP000855]
146810
146734
-
Thr
GGT
-
¡û
>A171000472
CP001398
Euryarchaeota
Thermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
466428
466504
+
Thr
GGT
-
¡û
>A171000697
CP001463
Euryarchaeota
Thermococcus sibiricus MM 739 [CP001463]
1123930
1124006
+
Thr
GGT
-
¡û
>A171001861
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
195533
195609
+
Thr
GGT
-
¡û
>A171002289
CP002779
Euryarchaeota
Pyrococcus yayanosii CH1 [CP002779]
318386
318462
+
Thr
GGT
-
¡û
>A171002601
CP002920
Euryarchaeota
Thermococcus sp. 4557 [CP002920]
710740
710664
-
Thr
GGT
-
¡û
>A171002666
CP002952
Euryarchaeota
Thermococcus sp. AM4 [CP002952]
1912462
1912538
+
Thr
GGT
-
¡û
>A171003338
CP003651
Euryarchaeota
Thermococcus cleftensis CL1 [CP003651]
357024
356948
-
Thr
GGT
-
¡û
>A171003768
CP006019
Euryarchaeota
Palaeococcus pacificus DY20341 [CP006019]
462540
462616
+
Thr
GGT
-
¡û
>A171003864
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
98235
98311
+
Thr
GGT
-
¡û
>A171004032
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
304527
304603
+
Thr
GGT
-
¡û
>A171004215
CP007140
Euryarchaeota
Thermococcus guaymasensis DSM 11113 [CP007140]
1126188
1126264
+
Thr
GGT
-
¡û
>A171004264
CP007264
Euryarchaeota
Thermococcus nautili 30-1 [CP007264]
41464
41540
+
Thr
GGT
-
¡û
>A171004465
CP008887
Euryarchaeota
Thermococcus eurythermalis A501 [CP008887]
1036657
1036581
-
Thr
GGT
-
¡û
>A171006365
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
1056280
1056204
-
Thr
GGT
-
¡û
>A171006461
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
228684
228760
+
Thr
GGT
-
¡û
>A171006599
CP014750
Euryarchaeota
Thermococcus peptonophilus OG-1 [CP014750]
1486182
1486106
-
Thr
GGT
-
¡û
>A171006655
CP015520
Euryarchaeota
Thermococcus piezophilus CDGS [CP015520]
1377441
1377517
+
Thr
GGT
-
¡û
>A171007096
CP021848
Euryarchaeota
Thermococcus sp. 5-4 [CP021848]
382682
382758
+
Thr
GGT
-
¡û
>At1928
AP006878
Euryarchaeota
Thermococcus kodakarensis KOD1 [AP006878]
1249192
1249268
+
Thr
GGT
[Ensembl]
¡û
>WENV170676004
LDZQ01001804
[LDZQ] terrestrial metagenome; oil reservoir sample I2
20
96
+
Thr
GGT
[ENA]
¢þ
>WENV170676729
LDZS01002048
[LDZS] terrestrial metagenome; oil reservoir sample K3
20632
20708
+
Thr
GGT
[ENA]
¢þ
>W1910200302
FJMQ01000003
Euryarchaeota
Thermococcus litoralis [FJMQ]
61047
61123
+
Thr
GGT
[ENA]
¡û
>W1910229993
FOIW01000002
Euryarchaeota
Thermococcus thioreducens OGL-20 [FOIW]
346794
346718
-
Thr
GGT
[ENA]
¡û
>W1910597275
LANF01000010
Euryarchaeota
Palaeococcus ferrophilus DSM 13482 [LANF]
19453
19377
-
Thr
GGT
[ENA]
¡û
>W1610000700
ABSF01000002
Euryarchaeota
Thermococcus barophilus MP [ABSF]
42818
42894
+
Thr
GGT
[ENA]
¡û
>W1610000876
ABXN01000011
Euryarchaeota
Thermococcus sp. AM4 [ABXN]
45077
45153
+
Thr
GGT
[ENA]
¡û
>W1610004917
AHVB01000033
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
1313
1237
-
Thr
GGT
[ENA]
¡û
>W1610005306
AJLF01000003
Euryarchaeota
Thermococcus zilligii AN1 [AJLF]
60829
60905
+
Thr
GGT
[ENA]
¡û
>W1610005565
AKID01000021
Euryarchaeota
Thermococcus sp. PK [AKID]
7013
6937
-
Thr
GGT
[ENA]
¡û
>W1610046825
BBCU01000004
Euryarchaeota
Thermococcus sp. JCM 11816 [BBCU]
115734
115658
-
Thr
GGT
[ENA]
¡û
>W1610548865
JXCG01000003
Euryarchaeota
Thermococcus sp. EP1 [JXCG]
55758
55682
-
Thr
GGT
[ENA]
¡û
>W1610612466
LGET01000263
Euryarchaeota
Thermococcales archaeon 44_46 [LGET]
20
96
+
Thr
GGT
[ENA]
¡û
>W1610613041
LGFJ01000019
Euryarchaeota
Thermococcus sp. 40_45 [LGFJ]
20632
20708
+
Thr
GGT
[ENA]
¡û
>W1610638230
LIXN01000006
Euryarchaeota
Thermococcus thioreducens DSM 14981 [LIXN]
79616
79540
-
Thr
GGT
[ENA]
¡û
>W1610717946
LLYW01000050
Euryarchaeota
Thermococcus celericrescens DSM 17994 [LLYW]
51458
51534
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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