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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147800 (45 seq.)
>A171000216
CP000855
Euryarchaeota
Thermococcus onnurineus NA1 [CP000855]
1148205
1148129
-
Phe
GAA
-
¡û
>A171000509
CP001398
Euryarchaeota
Thermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
334676
334600
-
Phe
GAA
-
¡û
>A171000714
CP001463
Euryarchaeota
Thermococcus sibiricus MM 739 [CP001463]
485067
484991
-
Phe
GAA
-
¡û
>A171001873
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
1113129
1113205
+
Phe
GAA
-
¡û
>A171002190
CP002670
Euryarchaeota
Pyrococcus sp. NA2 [CP002670]
609483
609407
-
Phe
GAA
-
¡û
>A171002308
CP002779
Euryarchaeota
Pyrococcus yayanosii CH1 [CP002779]
1255947
1255871
-
Phe
GAA
-
¡û
>A171002584
CP002920
Euryarchaeota
Thermococcus sp. 4557 [CP002920]
1666703
1666627
-
Phe
GAA
-
¡û
>A171002673
CP002952
Euryarchaeota
Thermococcus sp. AM4 [CP002952]
1763076
1763000
-
Phe
GAA
-
¡û
>A171003256
CP003534
Euryarchaeota
Pyrococcus sp. ST04 [CP003534]
153855
153931
+
Phe
GAA
-
¡û
>A171003324
CP003651
Euryarchaeota
Thermococcus cleftensis CL1 [CP003651]
1324875
1324799
-
Phe
GAA
-
¡û
>A171003356
CP003685
Euryarchaeota
Pyrococcus furiosus COM1 [CP003685]
1417396
1417472
+
Phe
GAA
-
¡û
>A171003776
CP006019
Euryarchaeota
Palaeococcus pacificus DY20341 [CP006019]
958338
958414
+
Phe
GAA
-
¡û
>A171003867
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
357529
357605
+
Phe
GAA
-
¡û
>A171004044
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
1239882
1239958
+
Phe
GAA
-
¡û
>A171004230
CP007140
Euryarchaeota
Thermococcus guaymasensis DSM 11113 [CP007140]
984229
984153
-
Phe
GAA
-
¡û
>A171004279
CP007264
Euryarchaeota
Thermococcus nautili 30-1 [CP007264]
1371492
1371568
+
Phe
GAA
-
¡û
>A171004436
CP008887
Euryarchaeota
Thermococcus eurythermalis A501 [CP008887]
794010
794086
+
Phe
GAA
-
¡û
>A171005873
CP010835
Euryarchaeota
Pyrococcus kukulkanii NCB100 [CP010835]
1242653
1242729
+
Phe
GAA
-
¡û
>A171006376
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
402230
402154
-
Phe
GAA
-
¡û
>A171006473
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
1280640
1280716
+
Phe
GAA
-
¡û
>A171006608
CP014750
Euryarchaeota
Thermococcus peptonophilus OG-1 [CP014750]
756771
756695
-
Phe
GAA
-
¡û
>A171006678
CP015520
Euryarchaeota
Thermococcus piezophilus CDGS [CP015520]
333207
333131
-
Phe
GAA
-
¡û
>A171007110
CP021848
Euryarchaeota
Thermococcus sp. 5-4 [CP021848]
1460304
1460228
-
Phe
GAA
-
¡û
>A171007534
LN999010
Euryarchaeota
Thermococcus chitonophagus [LN999010]
145766
145690
-
Phe
GAA
-
¡û
>At1806
AL096836
Euryarchaeota
Pyrococcus abyssi [AL096836]
150080
150004
-
Phe
GAA
[Ensembl]
¡û
>At1845
AE009950
Euryarchaeota
Pyrococcus furiosus DSM 3638 [AE009950]
77821
77745
-
Phe
GAA
[Ensembl]
¡û
>At1891
BA000001
Euryarchaeota
Pyrococcus horikoshii OT3 [BA000001]
127251
127175
-
Phe
GAA
[Ensembl]
¡û
>At1938
AP006878
Euryarchaeota
Thermococcus kodakarensis KOD1 [AP006878]
2054776
2054852
+
Phe
GAA
[Ensembl]
¡û
>WENV170675989
LDZQ01001657
[LDZQ] terrestrial metagenome; oil reservoir sample I2
5195
5119
-
Phe
GAA
[ENA]
¢þ
>WENV170676037
LDZR01000423
[LDZR] terrestrial metagenome; oil reservoir sample K2
2627
2551
-
Phe
GAA
[ENA]
¢þ
>WENV170676299
LDZR01002226
[LDZR] terrestrial metagenome; oil reservoir sample K2
1638
1714
+
Phe
GAA
[ENA]
¢þ
>WENV170676486
LDZS01000042
[LDZS] terrestrial metagenome; oil reservoir sample K3
13
89
+
Phe
GAA
[ENA]
¢þ
>W1910200312
FJMQ01000087
Euryarchaeota
Thermococcus litoralis [FJMQ]
4656
4580
-
Phe
GAA
[ENA]
¡û
>W1910229998
FOIW01000003
Euryarchaeota
Thermococcus thioreducens OGL-20 [FOIW]
35009
35085
+
Phe
GAA
[ENA]
¡û
>W1910597290
LANF01000018
Euryarchaeota
Palaeococcus ferrophilus DSM 13482 [LANF]
685
761
+
Phe
GAA
[ENA]
¡û
>W1610000734
ABSF01000013
Euryarchaeota
Thermococcus barophilus MP [ABSF]
265029
264953
-
Phe
GAA
[ENA]
¡û
>W1610000873
ABXN01000010
Euryarchaeota
Thermococcus sp. AM4 [ABXN]
63170
63094
-
Phe
GAA
[ENA]
¡û
>W1610004912
AHVB01000016
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
18164
18088
-
Phe
GAA
[ENA]
¡û
>W1610005307
AJLF01000003
Euryarchaeota
Thermococcus zilligii AN1 [AJLF]
84126
84202
+
Phe
GAA
[ENA]
¡û
>W1610005571
AKID01000029
Euryarchaeota
Thermococcus sp. PK [AKID]
6795
6719
-
Phe
GAA
[ENA]
¡û
>W1610548867
JXCG01000004
Euryarchaeota
Thermococcus sp. EP1 [JXCG]
1401
1477
+
Phe
GAA
[ENA]
¡û
>W1610612451
LGET01000116
Euryarchaeota
Thermococcales archaeon 44_46 [LGET]
5195
5119
-
Phe
GAA
[ENA]
¡û
>W1610612804
LGFD01000005
Euryarchaeota
Thermococcus sibiricus [LGFD]
1638
1714
+
Phe
GAA
[ENA]
¡û
>W1610638249
LIXN01000023
Euryarchaeota
Thermococcus thioreducens DSM 14981 [LIXN]
2015
2091
+
Phe
GAA
[ENA]
¡û
>W1610717936
LLYW01000031
Euryarchaeota
Thermococcus celericrescens DSM 17994 [LLYW]
1059
983
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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