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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147801 (31 seq.)
>A171000198
CP000855
Euryarchaeota
Thermococcus onnurineus NA1 [CP000855]
574470
574546
+
Val
TAC
-
¡û
>A171000471
CP001398
Euryarchaeota
Thermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
299808
299884
+
Val
TAC
-
¡û
>A171001868
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
616977
617053
+
Val
TAC
-
¡û
>A171002606
CP002920
Euryarchaeota
Thermococcus sp. 4557 [CP002920]
396433
396357
-
Val
TAC
-
¡û
>A171002665
CP002952
Euryarchaeota
Thermococcus sp. AM4 [CP002952]
1718764
1718840
+
Val
TAC
-
¡û
>A171003298
CP003651
Euryarchaeota
Thermococcus cleftensis CL1 [CP003651]
47460
47536
+
Val
TAC
-
¡û
>A171003779
CP006019
Euryarchaeota
Palaeococcus pacificus DY20341 [CP006019]
1190659
1190735
+
Val
TAC
-
¡û
>A171003877
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
1760960
1761036
+
Val
TAC
-
¡û
>A171004232
CP007140
Euryarchaeota
Thermococcus guaymasensis DSM 11113 [CP007140]
887530
887454
-
Val
TAC
-
¡û
>A171004299
CP007264
Euryarchaeota
Thermococcus nautili 30-1 [CP007264]
648408
648332
-
Val
TAC
-
¡û
>A171004462
CP008887
Euryarchaeota
Thermococcus eurythermalis A501 [CP008887]
1385954
1385878
-
Val
TAC
-
¡û
>A171006364
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
1194125
1194049
-
Val
TAC
-
¡û
>A171006468
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
721992
722068
+
Val
TAC
-
¡û
>A171006570
CP014750
Euryarchaeota
Thermococcus peptonophilus OG-1 [CP014750]
255910
255986
+
Val
TAC
-
¡û
>A171007099
CP021848
Euryarchaeota
Thermococcus sp. 5-4 [CP021848]
661001
661077
+
Val
TAC
-
¡û
>At1945
AP006878
Euryarchaeota
Thermococcus kodakarensis KOD1 [AP006878]
655905
655829
-
Val
TAC
[Ensembl]
¡û
>WENV170675994
LDZQ01001680
[LDZQ] terrestrial metagenome; oil reservoir sample I2
133
57
-
Val
TAC
[ENA]
¢þ
>WENV170676321
LDZR01002251
[LDZR] terrestrial metagenome; oil reservoir sample K2
2146
2222
+
Val
TAC
[ENA]
¢þ
>WENV170676504
LDZS01000292
[LDZS] terrestrial metagenome; oil reservoir sample K3
1087
1011
-
Val
TAC
[ENA]
¢þ
>WENV170779354
LZQN01002297
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
561
485
-
Val
TAC
[ENA]
¢þ
>W1910200335
FJMQ01000136
Euryarchaeota
Thermococcus litoralis [FJMQ]
4511
4587
+
Val
TAC
[ENA]
¡û
>W1910229970
FOIW01000001
Euryarchaeota
Thermococcus thioreducens OGL-20 [FOIW]
718419
718343
-
Val
TAC
[ENA]
¡û
>W1910597297
LANF01000019
Euryarchaeota
Palaeococcus ferrophilus DSM 13482 [LANF]
349878
349954
+
Val
TAC
[ENA]
¡û
>W1610000719
ABSF01000010
Euryarchaeota
Thermococcus barophilus MP [ABSF]
29801
29877
+
Val
TAC
[ENA]
¡û
>W1610000872
ABXN01000010
Euryarchaeota
Thermococcus sp. AM4 [ABXN]
18858
18934
+
Val
TAC
[ENA]
¡û
>W1610004913
AHVB01000017
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
314
238
-
Val
TAC
[ENA]
¡û
>W1610005601
AKID01000129
Euryarchaeota
Thermococcus sp. PK [AKID]
8774
8850
+
Val
TAC
[ENA]
¡û
>W1610612456
LGET01000139
Euryarchaeota
Thermococcales archaeon 44_46 [LGET]
133
57
-
Val
TAC
[ENA]
¡û
>W1610612826
LGFD01000030
Euryarchaeota
Thermococcus sibiricus [LGFD]
2146
2222
+
Val
TAC
[ENA]
¡û
>W1610638220
LIXN01000003
Euryarchaeota
Thermococcus thioreducens DSM 14981 [LIXN]
182213
182289
+
Val
TAC
[ENA]
¡û
>W1610717928
LLYW01000023
Euryarchaeota
Thermococcus celericrescens DSM 17994 [LLYW]
2428
2504
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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