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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147802 (22 seq.)
>A171000689
CP001463
Euryarchaeota
Thermococcus sibiricus MM 739 [CP001463]
679890
679966
+
Thr
CGT
-
¡û
>A171003799
CP006019
Euryarchaeota
Palaeococcus pacificus DY20341 [CP006019]
420693
420617
-
Thr
CGT
-
¡û
>A171003878
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
1864925
1865001
+
Thr
CGT
-
¡û
>A171004061
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
785938
785862
-
Thr
CGT
-
¡û
>A171006367
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
946689
946613
-
Thr
CGT
-
¡û
>WENV170675979
LDZQ01001565
[LDZQ] terrestrial metagenome; oil reservoir sample I2
7463
7539
+
Thr
CGT
[ENA]
¢þ
>WENV170676005
LDZQ01001828
[LDZQ] terrestrial metagenome; oil reservoir sample I2
476
400
-
Thr
CGT
[ENA]
¢þ
>WENV170676193
LDZR01001550
[LDZR] terrestrial metagenome; oil reservoir sample K2
817
741
-
Thr
CGT
[ENA]
¢þ
>WENV170676311
LDZR01002237
[LDZR] terrestrial metagenome; oil reservoir sample K2
27953
28029
+
Thr
CGT
[ENA]
¢þ
>WENV170676323
LDZR01002281
[LDZR] terrestrial metagenome; oil reservoir sample K2
2055
2131
+
Thr
CGT
[ENA]
¢þ
>WENV170676542
LDZS01001062
[LDZS] terrestrial metagenome; oil reservoir sample K3
2492
2416
-
Thr
CGT
[ENA]
¢þ
>WENV170676966
LDZS01003807
[LDZS] terrestrial metagenome; oil reservoir sample K3
4273
4197
-
Thr
CGT
[ENA]
¢þ
>WENV170676967
LDZS01003814
[LDZS] terrestrial metagenome; oil reservoir sample K3
86
10
-
Thr
CGT
[ENA]
¢þ
>WENV170779400
LZQN01006434
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
314
390
+
Thr
CGT
[ENA]
¢þ
>W1910200337
FJMQ01000145
Euryarchaeota
Thermococcus litoralis [FJMQ]
17666
17742
+
Thr
CGT
[ENA]
¡û
>W1610004942
AHVB01000065
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
26270
26194
-
Thr
CGT
[ENA]
¡û
>W1610005279
AJLF01000001
Euryarchaeota
Thermococcus zilligii AN1 [AJLF]
680697
680621
-
Thr
CGT
[ENA]
¡û
>W1610005590
AKID01000112
Euryarchaeota
Thermococcus sp. PK [AKID]
19985
19909
-
Thr
CGT
[ENA]
¡û
>W1610548882
JXCG01000006
Euryarchaeota
Thermococcus sp. EP1 [JXCG]
51300
51224
-
Thr
CGT
[ENA]
¡û
>W1610612441
LGET01000024
Euryarchaeota
Thermococcales archaeon 44_46 [LGET]
7463
7539
+
Thr
CGT
[ENA]
¡û
>W1610612816
LGFD01000016
Euryarchaeota
Thermococcus sibiricus [LGFD]
27953
28029
+
Thr
CGT
[ENA]
¡û
>W1610612828
LGFD01000060
Euryarchaeota
Thermococcus sibiricus [LGFD]
2055
2131
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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