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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147803 (16 seq.)
>A171000694
CP001463
Euryarchaeota
Thermococcus sibiricus MM 739 [CP001463]
908414
908490
+
Arg
TCT
-
¡û
>A171003342
CP003685
Euryarchaeota
Pyrococcus furiosus COM1 [CP003685]
39414
39490
+
Arg
TCT
-
¡û
>A171003773
CP006019
Euryarchaeota
Palaeococcus pacificus DY20341 [CP006019]
938279
938355
+
Arg
TCT
-
¡û
>A171003882
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
2074801
2074877
+
Arg
TCT
-
¡û
>A171004058
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
1195094
1195018
-
Arg
TCT
-
¡û
>A171006368
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
732851
732775
-
Arg
TCT
-
¡û
>At1826
AE009950
Euryarchaeota
Pyrococcus furiosus DSM 3638 [AE009950]
240406
240482
+
Arg
TCT
[Ensembl]
¡û
>WENV170675693
LDZQ01000203
[LDZQ] terrestrial metagenome; oil reservoir sample I2
3090
3014
-
Arg
TCT
[ENA]
¢þ
>WENV170675694
LDZQ01000272
[LDZQ] terrestrial metagenome; oil reservoir sample I2
12
88
+
Arg
TCT
[ENA]
¢þ
>WENV170676010
LDZR01000005
[LDZR] terrestrial metagenome; oil reservoir sample K2
1814
1738
-
Arg
TCT
[ENA]
¢þ
>WENV170676032
LDZR01000341
[LDZR] terrestrial metagenome; oil reservoir sample K2
140
216
+
Arg
TCT
[ENA]
¢þ
>WENV170676038
LDZR01000448
[LDZR] terrestrial metagenome; oil reservoir sample K2
2534
2458
-
Arg
TCT
[ENA]
¢þ
>W1910200342
FJMQ01000158
Euryarchaeota
Thermococcus litoralis [FJMQ]
25870
25946
+
Arg
TCT
[ENA]
¡û
>W1610004910
AHVB01000014
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
72954
72878
-
Arg
TCT
[ENA]
¡û
>W1610005603
AKID01000132
Euryarchaeota
Thermococcus sp. PK [AKID]
11025
10949
-
Arg
TCT
[ENA]
¡û
>W1610548862
JXCG01000003
Euryarchaeota
Thermococcus sp. EP1 [JXCG]
241761
241685
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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