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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147806 (34 seq.)
>A171000222
CP000855
Euryarchaeota
Thermococcus onnurineus NA1 [CP000855]
192657
192581
-
Thr
TGT
-
¡û
>A171000485
CP001398
Euryarchaeota
Thermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
1753471
1753547
+
Thr
TGT
-
¡û
>A171000684
CP001463
Euryarchaeota
Thermococcus sibiricus MM 739 [CP001463]
370983
371059
+
Thr
TGT
-
¡û
>A171002287
CP002779
Euryarchaeota
Pyrococcus yayanosii CH1 [CP002779]
317548
317624
+
Thr
TGT
-
¡û
>A171002600
CP002920
Euryarchaeota
Thermococcus sp. 4557 [CP002920]
760637
760561
-
Thr
TGT
-
¡û
>A171002681
CP002952
Euryarchaeota
Thermococcus sp. AM4 [CP002952]
1247773
1247697
-
Thr
TGT
-
¡û
>A171003284
CP003534
Euryarchaeota
Pyrococcus sp. ST04 [CP003534]
1435463
1435387
-
Thr
TGT
-
¡û
>A171003337
CP003651
Euryarchaeota
Thermococcus cleftensis CL1 [CP003651]
405335
405259
-
Thr
TGT
-
¡û
>A171003902
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
480935
480859
-
Thr
TGT
-
¡û
>A171004208
CP007140
Euryarchaeota
Thermococcus guaymasensis DSM 11113 [CP007140]
435919
435995
+
Thr
TGT
-
¡û
>A171004263
CP007264
Euryarchaeota
Thermococcus nautili 30-1 [CP007264]
11399
11475
+
Thr
TGT
-
¡û
>A171004464
CP008887
Euryarchaeota
Thermococcus eurythermalis A501 [CP008887]
1061497
1061421
-
Thr
TGT
-
¡û
>A171006345
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
282230
282306
+
Thr
TGT
-
¡û
>A171006591
CP014750
Euryarchaeota
Thermococcus peptonophilus OG-1 [CP014750]
1529345
1529421
+
Thr
TGT
-
¡û
>A171006654
CP015520
Euryarchaeota
Thermococcus piezophilus CDGS [CP015520]
1332732
1332808
+
Thr
TGT
-
¡û
>A171007120
CP021848
Euryarchaeota
Thermococcus sp. 5-4 [CP021848]
339829
339753
-
Thr
TGT
-
¡û
>At1925
AP006878
Euryarchaeota
Thermococcus kodakarensis KOD1 [AP006878]
1128153
1128229
+
Thr
TGT
[Ensembl]
¡û
>WENV170675986
LDZQ01001625
[LDZQ] terrestrial metagenome; oil reservoir sample I2
4280
4204
-
Thr
TGT
[ENA]
¢þ
>WENV170676312
LDZR01002238
[LDZR] terrestrial metagenome; oil reservoir sample K2
13
89
+
Thr
TGT
[ENA]
¢þ
>WENV170676719
LDZS01002036
[LDZS] terrestrial metagenome; oil reservoir sample K3
8907
8983
+
Thr
TGT
[ENA]
¢þ
>W1910200323
FJMQ01000103
Euryarchaeota
Thermococcus litoralis [FJMQ]
28642
28566
-
Thr
TGT
[ENA]
¡û
>W1910229991
FOIW01000002
Euryarchaeota
Thermococcus thioreducens OGL-20 [FOIW]
392586
392510
-
Thr
TGT
[ENA]
¡û
>W1910597267
LANF01000009
Euryarchaeota
Palaeococcus ferrophilus DSM 13482 [LANF]
180842
180766
-
Thr
TGT
[ENA]
¡û
>W1610000892
ABXN01000014
Euryarchaeota
Thermococcus sp. AM4 [ABXN]
203719
203795
+
Thr
TGT
[ENA]
¡û
>W1610004924
AHVB01000044
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
22152
22076
-
Thr
TGT
[ENA]
¡û
>W1610005284
AJLF01000001
Euryarchaeota
Thermococcus zilligii AN1 [AJLF]
178782
178706
-
Thr
TGT
[ENA]
¡û
>W1610005562
AKID01000006
Euryarchaeota
Thermococcus sp. PK [AKID]
19737
19661
-
Thr
TGT
[ENA]
¡û
>W1610046828
BBCU01000005
Euryarchaeota
Thermococcus sp. JCM 11816 [BBCU]
70159
70083
-
Thr
TGT
[ENA]
¡û
>W1610548877
JXCG01000004
Euryarchaeota
Thermococcus sp. EP1 [JXCG]
125820
125744
-
Thr
TGT
[ENA]
¡û
>W1610612448
LGET01000084
Euryarchaeota
Thermococcales archaeon 44_46 [LGET]
4280
4204
-
Thr
TGT
[ENA]
¡û
>W1610612817
LGFD01000017
Euryarchaeota
Thermococcus sibiricus [LGFD]
13
89
+
Thr
TGT
[ENA]
¡û
>W1610613031
LGFJ01000007
Euryarchaeota
Thermococcus sp. 40_45 [LGFJ]
8907
8983
+
Thr
TGT
[ENA]
¡û
>W1610638228
LIXN01000006
Euryarchaeota
Thermococcus thioreducens DSM 14981 [LIXN]
125402
125326
-
Thr
TGT
[ENA]
¡û
>W1610717945
LLYW01000050
Euryarchaeota
Thermococcus celericrescens DSM 17994 [LLYW]
201
277
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK