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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147809 (109 seq.)
>A171003600
CP004144
Euryarchaeota
Methanosarcina mazei Tuc01 [CP004144]
1583717
1583644
-
Thr
TGT
-
¡û
>A171004352
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
2925162
2925235
+
Thr
TGT
-
¡û
>A171004516
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
2476493
2476566
+
Thr
TGT
-
¡û
>A171004601
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
1565532
1565459
-
Thr
TGT
-
¡û
>A171004660
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
236864
236791
-
Thr
TGT
-
¡û
>A171004712
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
216841
216768
-
Thr
TGT
-
¡û
>A171004736
CP009505
Euryarchaeota
Methanosarcina sp. MTP4 [CP009505]
3945077
3945150
+
Thr
TGT
-
¡û
>A171004817
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
263852
263779
-
Thr
TGT
-
¡û
>A171004870
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
260882
260809
-
Thr
TGT
-
¡û
>A171004922
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
301988
301915
-
Thr
TGT
-
¡û
>A171004948
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
3819454
3819527
+
Thr
TGT
-
¡û
>A171004998
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
3794610
3794683
+
Thr
TGT
-
¡û
>A171005050
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
3877595
3877668
+
Thr
TGT
-
¡û
>A171005104
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
3881282
3881355
+
Thr
TGT
-
¡û
>A171005156
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
3894874
3894947
+
Thr
TGT
-
¡û
>A171005189
CP009515
Euryarchaeota
Methanosarcina lacustris Z-7289 [CP009515]
105939
106012
+
Thr
TGT
-
¡û
>A171005259
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
4733627
4733700
+
Thr
TGT
-
¡û
>A171005334
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
2868480
2868407
-
Thr
TGT
-
¡û
>A171005396
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
342725
342798
+
Thr
TGT
-
¡û
>A171005451
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
328278
328351
+
Thr
TGT
-
¡û
>A171005526
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
4513563
4513636
+
Thr
TGT
-
¡û
>A171005604
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
425018
424945
-
Thr
TGT
-
¡û
>A171005619
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
2662037
2662110
+
Thr
TGT
-
¡û
>WENV180345918
OBLN01011206
[OBLN] sediment metagenome; sediment
215
142
-
Thr
TGT
[ENA]
¢þ
>WENV180346541
OBLN01148828
[OBLN] sediment metagenome; sediment
49
122
+
Thr
TGT
[ENA]
¢þ
>WENV170008149
AMZC01003044
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
1231
1304
+
Thr
TGT
[ENA]
¢þ
>At1406
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
320282
320209
-
Thr
TGT
[Ensembl]
¡û
>At1481
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
1551579
1551506
-
Thr
TGT
[Ensembl]
¡û
>At1541
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
1833846
1833773
-
Thr
TGT
[Ensembl]
¡û
>WENV170689644
LFRM01305096
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
50837
50764
-
Thr
TGT
[ENA]
¢þ
>WENV170717744
LSQX01047781
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
25959
26032
+
Thr
TGT
[ENA]
¢þ
>WENV170720043
LSQX01138434
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3182
3109
-
Thr
TGT
[ENA]
¢þ
>WENV170784319
MCHG01000783
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
475
548
+
Thr
TGT
[ENA]
¢þ
>WENV170784380
MCHG01002275
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
477
550
+
Thr
TGT
[ENA]
¢þ
>W1910230913
FPAO01000011
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
55140
55213
+
Thr
TGT
[ENA]
¡û
>W1910569227
JJOR01000010
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
15085
15158
+
Thr
TGT
[ENA]
¡û
>W1910569316
JJOS01000110
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
15097
15170
+
Thr
TGT
[ENA]
¡û
>W1910569347
JJOT01000037
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
11666
11739
+
Thr
TGT
[ENA]
¡û
>W1910569419
JJOU01000185
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
34127
34200
+
Thr
TGT
[ENA]
¡û
>W1910569440
JJOV01000031
Euryarchaeota
Methanosarcina sp. 2.H.A.1B.4 [JJOV]
43808
43881
+
Thr
TGT
[ENA]
¡û
>W1910569519
JJOW01000245
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.15 [JJOW]
9056
8983
-
Thr
TGT
[ENA]
¡û
>W1910569545
JJOX01000048
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.3 [JJOX]
123029
123102
+
Thr
TGT
[ENA]
¡û
>W1910569602
JJOY01000023
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.6 [JJOY]
60060
59987
-
Thr
TGT
[ENA]
¡û
>W1910569643
JJOZ01000016
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.8 [JJOZ]
60060
59987
-
Thr
TGT
[ENA]
¡û
>W1910569729
JJPA01000241
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
15070
15143
+
Thr
TGT
[ENA]
¡û
>W1910569754
JJPB01000081
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
16509
16582
+
Thr
TGT
[ENA]
¡û
>W1910569836
JJPC01000165
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
15096
15169
+
Thr
TGT
[ENA]
¡û
>W1910569847
JJPD01000078
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
15158
15231
+
Thr
TGT
[ENA]
¡û
>W1910569896
JJPE01000010
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
15103
15176
+
Thr
TGT
[ENA]
¡û
>W1910569984
JJPF01000133
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
16590
16663
+
Thr
TGT
[ENA]
¡û
>W1910570025
JJPG01000132
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
15153
15226
+
Thr
TGT
[ENA]
¡û
>W1910570075
JJPH01000101
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
15094
15167
+
Thr
TGT
[ENA]
¡û
>W1910570114
JJPI01000064
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
15093
15166
+
Thr
TGT
[ENA]
¡û
>W1910570181
JJPJ01000095
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
15095
15168
+
Thr
TGT
[ENA]
¡û
>W1910570225
JJPK01000086
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
15097
15170
+
Thr
TGT
[ENA]
¡û
>W1910570245
JJPL01000014
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
15096
15169
+
Thr
TGT
[ENA]
¡û
>W1910570344
JJPM01000326
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
5614
5687
+
Thr
TGT
[ENA]
¡û
>W1910570361
JJPN01000051
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
23762
23689
-
Thr
TGT
[ENA]
¡û
>W1910570435
JJPO01000137
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
11328
11401
+
Thr
TGT
[ENA]
¡û
>W1910570453
JJPP01000026
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
11455
11528
+
Thr
TGT
[ENA]
¡û
>W1910570520
JJPQ01000072
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
6260
6187
-
Thr
TGT
[ENA]
¡û
>W1910570554
JJPR01000024
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
2383
2456
+
Thr
TGT
[ENA]
¡û
>W1910570647
JJPS01000222
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
2383
2456
+
Thr
TGT
[ENA]
¡û
>W1910570675
JJPT01000100
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
11453
11526
+
Thr
TGT
[ENA]
¡û
>W1910570699
JJPU01000015
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
15097
15170
+
Thr
TGT
[ENA]
¡û
>W1910570771
JJPV01000047
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
15095
15168
+
Thr
TGT
[ENA]
¡û
>W1910570820
JJPW01000037
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
15095
15168
+
Thr
TGT
[ENA]
¡û
>W1910570864
JJPX01000055
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
2383
2456
+
Thr
TGT
[ENA]
¡û
>W1910570921
JJPY01000061
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
7378
7305
-
Thr
TGT
[ENA]
¡û
>W1910570957
JJPZ01000020
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
54554
54481
-
Thr
TGT
[ENA]
¡û
>W1910571016
JJQA01000068
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
7221
7148
-
Thr
TGT
[ENA]
¡û
>W1910571082
JJQB01000094
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
7115
7042
-
Thr
TGT
[ENA]
¡û
>W1910571108
JJQC01000029
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
96041
96114
+
Thr
TGT
[ENA]
¡û
>W1910571155
JJQD01000016
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
15089
15162
+
Thr
TGT
[ENA]
¡û
>W1910571228
JJQE01000134
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
15094
15167
+
Thr
TGT
[ENA]
¡û
>W1910571284
JJQF01000101
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
59687
59614
-
Thr
TGT
[ENA]
¡û
>W1910571312
JJQG01000061
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
15098
15171
+
Thr
TGT
[ENA]
¡û
>W1910571370
JJQH01000077
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
15096
15169
+
Thr
TGT
[ENA]
¡û
>W1910571451
JJQI01000115
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
98687
98760
+
Thr
TGT
[ENA]
¡û
>W1910571483
JJQJ01000138
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
15052
15125
+
Thr
TGT
[ENA]
¡û
>W1910571532
JJQK01000124
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
11449
11522
+
Thr
TGT
[ENA]
¡û
>W1910571601
JJQL01000079
Euryarchaeota
Methanosarcina sp. 1.H.A.2.2 [JJQL]
86535
86462
-
Thr
TGT
[ENA]
¡û
>W1910571653
JJQM01000096
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
15096
15169
+
Thr
TGT
[ENA]
¡û
>W1910571741
JJQN01000196
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
5246
5319
+
Thr
TGT
[ENA]
¡û
>W1910571766
JJQO01000201
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
15096
15169
+
Thr
TGT
[ENA]
¡û
>W1910571829
JJQP01000206
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
11411
11484
+
Thr
TGT
[ENA]
¡û
>W1910571878
JJQQ01000098
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
15098
15171
+
Thr
TGT
[ENA]
¡û
>W1910571919
JJQR01000055
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
15096
15169
+
Thr
TGT
[ENA]
¡û
>W1910571998
JJQS01000133
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
15098
15171
+
Thr
TGT
[ENA]
¡û
>W1910572025
JJQT01000119
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
13074
13147
+
Thr
TGT
[ENA]
¡û
>W1910572053
JJQU01000035
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
11446
11519
+
Thr
TGT
[ENA]
¡û
>W1910572139
JJQV01000095
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
15095
15168
+
Thr
TGT
[ENA]
¡û
>W1910572157
JJQW01000012
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
15096
15169
+
Thr
TGT
[ENA]
¡û
>W1910572206
JJQX01000013
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
15080
15153
+
Thr
TGT
[ENA]
¡û
>W1910572244
JJQY01000003
Euryarchaeota
Methanosarcina sp. 1.H.T.1A.1 [JJQY]
48563
48636
+
Thr
TGT
[ENA]
¡û
>W1910572335
JJQZ01000124
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
15094
15167
+
Thr
TGT
[ENA]
¡û
>W1910572353
JJRA01000017
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
11511
11584
+
Thr
TGT
[ENA]
¡û
>W1910572417
JJRB01000068
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
15096
15169
+
Thr
TGT
[ENA]
¡û
>W1910575072
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
1162152
1162079
-
Thr
TGT
[ENA]
¡û
>W1910635274
LMVP01000527
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
2229
2156
-
Thr
TGT
[ENA]
¡û
>W1910655391
LZPK01000134
Euryarchaeota
Methanosarcina sp. A14 [LZPK]
4244
4171
-
Thr
TGT
[ENA]
¡û
>W1910694773
MDTP02000042
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
2215
2288
+
Thr
TGT
[ENA]
¡û
>W1910694808
MDTP02000205
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
475
548
+
Thr
TGT
[ENA]
¡û
>W1610000006
AAAR03000001
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
867843
867916
+
Thr
TGT
[ENA]
¡û
>W1610045118
BBBC01000074
Euryarchaeota
Methanosarcina mazei JCM 9314 [BBBC]
15081
15154
+
Thr
TGT
[ENA]
¡û
>W1610046906
BBCW01000042
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
32556
32483
-
Thr
TGT
[ENA]
¡û
>W1610605116
LFRP01000035
Euryarchaeota
Methanosarcina sp. DTU009 [LFRP]
50837
50764
-
Thr
TGT
[ENA]
¡û
>W1610670249
LKAZ01000036
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
51150
51077
-
Thr
TGT
[ENA]
¡û
>W1610919897
LSRV01000009
Euryarchaeota
Methanolobus sp. T82-4 [LSRV]
9752
9679
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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