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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147811 (92 seq.)
>A171001432
CP001994
Euryarchaeota
Methanohalophilus mahii DSM 5219 [CP001994]
432729
432805
+
Ile
GAT
-
¡û
>A171004349
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
2418483
2418559
+
Ile
GAT
-
¡û
>A171004350
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
2418621
2418697
+
Ile
GAT
-
¡û
>A171004521
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
3062249
3062325
+
Ile
GAT
-
¡û
>A171004522
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
3062387
3062463
+
Ile
GAT
-
¡û
>A171004606
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
967290
967214
-
Ile
GAT
-
¡û
>A171004607
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
967152
967076
-
Ile
GAT
-
¡û
>A171004669
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
1091606
1091682
+
Ile
GAT
-
¡û
>A171004670
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
1091745
1091818
+
Ile
GAT
-
¡û
>A171004746
CP009505
Euryarchaeota
Methanosarcina sp. MTP4 [CP009505]
3009038
3008962
-
Ile
GAT
-
¡û
>A171004747
CP009505
Euryarchaeota
Methanosarcina sp. MTP4 [CP009505]
3008892
3008818
-
Ile
GAT
-
¡û
>A171004810
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
1432150
1432074
-
Ile
GAT
-
¡û
>A171005072
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
1092278
1092205
-
Ile
GAT
-
¡û
>A171005176
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
1114653
1114577
-
Ile
GAT
-
¡û
>A171005177
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
1114517
1114444
-
Ile
GAT
-
¡û
>A171005425
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
3599245
3599169
-
Ile
GAT
-
¡û
>A171005481
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
3603931
3603855
-
Ile
GAT
-
¡û
>A171005532
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
3629640
3629564
-
Ile
GAT
-
¡û
>A171005533
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
3629489
3629413
-
Ile
GAT
-
¡û
>A171005602
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
932310
932234
-
Ile
GAT
-
¡û
>A171005617
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
2153808
2153884
+
Ile
GAT
-
¡û
>A171006824
CP017921
Euryarchaeota
Methanohalophilus halophilus Z-7982 [CP017921]
286370
286294
-
Ile
GAT
-
¡û
>WENV180347068
OBLN01544410
[OBLN] sediment metagenome; sediment
73
-1
-
Ile
GAT
[ENA]
¢þ
>WENV170007966
AMWB02168163
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
255
331
+
Ile
GAT
[ENA]
¢þ
>WENV170008214
AMZC01004894
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
2880
2804
-
Ile
GAT
[ENA]
¢þ
>At1446
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
2435508
2435584
+
Ile
GAT
[Ensembl]
¡û
>At1447
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
2435659
2435735
+
Ile
GAT
[Ensembl]
¡û
>WENV170684841
LFRM01060814
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
20273
20349
+
Ile
GAT
[ENA]
¢þ
>WENV170684842
LFRM01060814
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
20411
20487
+
Ile
GAT
[ENA]
¢þ
>WENV170692219
LGOV01000930
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
1673
1749
+
Ile
GAT
[ENA]
¢þ
>W1910228309
FNMU01000001
Euryarchaeota
Methanohalophilus halophilus Z-7982 [FNMU]
100590
100514
-
Ile
GAT
[ENA]
¡û
>W1910230903
FPAO01000007
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
28775
28851
+
Ile
GAT
[ENA]
¡û
>W1910230904
FPAO01000007
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
28913
28989
+
Ile
GAT
[ENA]
¡û
>W1910471798
FXBN01000001
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [FXBN]
626750
626674
-
Ile
GAT
[ENA]
¡û
>W1910569473
JJOV01000090
Euryarchaeota
Methanosarcina sp. 2.H.A.1B.4 [JJOV]
219990
220066
+
Ile
GAT
[ENA]
¡û
>W1910569474
JJOV01000090
Euryarchaeota
Methanosarcina sp. 2.H.A.1B.4 [JJOV]
220143
220219
+
Ile
GAT
[ENA]
¡û
>W1910569513
JJOW01000215
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.15 [JJOW]
7486
7412
-
Ile
GAT
[ENA]
¡û
>W1910569537
JJOX01000027
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.3 [JJOX]
16406
16332
-
Ile
GAT
[ENA]
¡û
>W1910569624
JJOY01000051
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.6 [JJOY]
13441
13515
+
Ile
GAT
[ENA]
¡û
>W1910569668
JJOZ01000055
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.8 [JJOZ]
1638
1712
+
Ile
GAT
[ENA]
¡û
>W1910569691
JJPA01000060
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
13081
13008
-
Ile
GAT
[ENA]
¡û
>W1910569774
JJPB01000122
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
30598
30671
+
Ile
GAT
[ENA]
¡û
>W1910569883
JJPD01000185
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
7087
7014
-
Ile
GAT
[ENA]
¡û
>W1910569925
JJPE01000126
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
12837
12764
-
Ile
GAT
[ENA]
¡û
>W1910569972
JJPF01000085
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
13238
13162
-
Ile
GAT
[ENA]
¡û
>W1910569973
JJPF01000085
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
13102
13029
-
Ile
GAT
[ENA]
¡û
>W1910570027
JJPG01000141
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
31945
32018
+
Ile
GAT
[ENA]
¡û
>W1910570066
JJPH01000071
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
30462
30538
+
Ile
GAT
[ENA]
¡û
>W1910570067
JJPH01000071
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
30598
30671
+
Ile
GAT
[ENA]
¡û
>W1910570100
JJPI01000023
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
18625
18549
-
Ile
GAT
[ENA]
¡û
>W1910570101
JJPI01000023
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
18489
18416
-
Ile
GAT
[ENA]
¡û
>W1910570214
JJPK01000058
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
60163
60239
+
Ile
GAT
[ENA]
¡û
>W1910570215
JJPK01000058
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
60299
60372
+
Ile
GAT
[ENA]
¡û
>W1910570254
JJPL01000055
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
87875
87948
+
Ile
GAT
[ENA]
¡û
>W1910570327
JJPM01000195
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
2993
2920
-
Ile
GAT
[ENA]
¡û
>W1910570463
JJPP01000045
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
8388
8461
+
Ile
GAT
[ENA]
¡û
>W1910570720
JJPU01000104
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
12922
12846
-
Ile
GAT
[ENA]
¡û
>W1910570721
JJPU01000104
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
12786
12713
-
Ile
GAT
[ENA]
¡û
>W1910570765
JJPV01000035
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
18337
18264
-
Ile
GAT
[ENA]
¡û
>W1910570832
JJPW01000056
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
60232
60305
+
Ile
GAT
[ENA]
¡û
>W1910571030
JJQA01000089
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
109801
109874
+
Ile
GAT
[ENA]
¡û
>W1910571056
JJQB01000023
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
108330
108406
+
Ile
GAT
[ENA]
¡û
>W1910571057
JJQB01000023
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
108466
108539
+
Ile
GAT
[ENA]
¡û
>W1910571145
JJQC01000148
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
17500
17424
-
Ile
GAT
[ENA]
¡û
>W1910571146
JJQC01000148
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
17364
17291
-
Ile
GAT
[ENA]
¡û
>W1910571151
JJQD01000005
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
62265
62341
+
Ile
GAT
[ENA]
¡û
>W1910571152
JJQD01000005
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
62401
62474
+
Ile
GAT
[ENA]
¡û
>W1910571240
JJQE01000154
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
30731
30804
+
Ile
GAT
[ENA]
¡û
>W1910571286
JJQF01000113
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
148232
148308
+
Ile
GAT
[ENA]
¡û
>W1910571287
JJQF01000113
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
148368
148441
+
Ile
GAT
[ENA]
¡û
>W1910571411
JJQI01000005
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
30753
30826
+
Ile
GAT
[ENA]
¡û
>W1910571516
JJQK01000041
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
1261
1188
-
Ile
GAT
[ENA]
¡û
>W1910571609
JJQL01000089
Euryarchaeota
Methanosarcina sp. 1.H.A.2.2 [JJQL]
103583
103507
-
Ile
GAT
[ENA]
¡û
>W1910572094
JJQU01000183
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
7236
7160
-
Ile
GAT
[ENA]
¡û
>W1910572095
JJQU01000183
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
7100
7027
-
Ile
GAT
[ENA]
¡û
>W1910572285
JJQY01000140
Euryarchaeota
Methanosarcina sp. 1.H.T.1A.1 [JJQY]
6976
6900
-
Ile
GAT
[ENA]
¡û
>W1910582967
JWTK01000002
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [JWTK]
383218
383294
+
Ile
GAT
[ENA]
¡û
>W1910635270
LMVP01000516
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
14731
14655
-
Ile
GAT
[ENA]
¡û
>W1910635271
LMVP01000516
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
14592
14516
-
Ile
GAT
[ENA]
¡û
>W1910655408
LZPK01000374
Euryarchaeota
Methanosarcina sp. A14 [LZPK]
2295
2371
+
Ile
GAT
[ENA]
¡û
>W1910783583
MPPA01000047
Euryarchaeota
Methanococcoides sp. EBM-47 [MPPA]
64368
64294
-
Ile
GAT
[ENA]
¡û
>W1911633759
PVBU01000004
Euryarchaeota
Methanohalophilus euhalobius DSM 10369 [PVBU]
32081
32005
-
Ile
GAT
[ENA]
¡û
>W1610000021
AAAR03000004
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
207991
208067
+
Ile
GAT
[ENA]
¡û
>W1610000022
AAAR03000004
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
208142
208218
+
Ile
GAT
[ENA]
¡û
>W1610045096
BBBC01000007
Euryarchaeota
Methanosarcina mazei JCM 9314 [BBBC]
39726
39650
-
Ile
GAT
[ENA]
¡û
>W1610045097
BBBC01000007
Euryarchaeota
Methanosarcina mazei JCM 9314 [BBBC]
39590
39517
-
Ile
GAT
[ENA]
¡û
>W1610046881
BBCW01000007
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
9777
9702
-
Ile
GAT
[ENA]
¡û
>W1610048627
BBEF01000222
Euryarchaeota
Methanosarcina barkeri JCM 10043 [BBEF]
967
891
-
Ile
GAT
[ENA]
¡û
>W1610605088
LFRP01000011
Euryarchaeota
Methanosarcina sp. DTU009 [LFRP]
20273
20349
+
Ile
GAT
[ENA]
¡û
>W1610605089
LFRP01000011
Euryarchaeota
Methanosarcina sp. DTU009 [LFRP]
20411
20487
+
Ile
GAT
[ENA]
¡û
>W1610919859
LSRU01000020
Euryarchaeota
Methanohalophilus sp. T328-1 [LSRU]
11077
11001
-
Ile
GAT
[ENA]
¡û
>W1611052505
MAFX01000027
Euryarchaeota
Methanohalophilus sp. DAL1 [MAFX]
4485
4561
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK