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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147815 (27 seq.)
>A171004531
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
2512477
2512403
-
Val
CAC
-
¡û
>A171004581
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
1529550
1529624
+
Val
CAC
-
¡û
>A171005236
CP009515
Euryarchaeota
Methanosarcina lacustris Z-7289 [CP009515]
352789
352715
-
Val
CAC
-
¡û
>A171007192
HE964772
Euryarchaeota
Methanoculleus bourgensis MS2 MS2T [HE964772]
1494590
1494663
+
Val
CAC
-
¡û
>A171007549
LT158599
Euryarchaeota
Methanoculleus bourgensis [LT158599]
1496983
1497056
+
Val
CAC
-
¡û
>WENV181231111
OFEK01009978
[OFEK] activated sludge metagenome; Anaerobic digester
2764
2691
-
Val
CAC
[ENA]
¢þ
>WENV183514299
OMKS01015540
[OMKS] sediment metagenome; hot spring sediment
3270
3194
-
Val
CAC
[ENA]
¢þ
>WENV170562475
CZCB01003035
[CZCB] anaerobic digester metagenome; anaerobic digester
1426
1499
+
Val
CAC
[ENA]
¢þ
>WENV170677276
LDZT01004659
[LDZT] terrestrial metagenome; oil reservoir sample SB1
11883
11956
+
Val
CAC
[ENA]
¢þ
>WENV170678702
LDZU01003943
[LDZU] terrestrial metagenome; oil reservoir sample SB2
11883
11956
+
Val
CAC
[ENA]
¢þ
>WENV170689471
LFRM01296106
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
95
22
-
Val
CAC
[ENA]
¢þ
>WENV170689642
LFRM01305096
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
14853
14927
+
Val
CAC
[ENA]
¢þ
>WENV170721346
LSQX01186851
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
140
213
+
Val
CAC
[ENA]
¢þ
>W1910230914
FPAO01000011
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
91123
91049
-
Val
CAC
[ENA]
¡û
>W1910569457
JJOV01000071
Euryarchaeota
Methanosarcina sp. 2.H.A.1B.4 [JJOV]
18468
18542
+
Val
CAC
[ENA]
¡û
>W1910569504
JJOW01000186
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.15 [JJOW]
11859
11785
-
Val
CAC
[ENA]
¡û
>W1910569574
JJOX01000085
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.3 [JJOX]
26828
26754
-
Val
CAC
[ENA]
¡û
>W1910569601
JJOY01000023
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.6 [JJOY]
209845
209771
-
Val
CAC
[ENA]
¡û
>W1910569642
JJOZ01000016
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.8 [JJOZ]
209855
209781
-
Val
CAC
[ENA]
¡û
>W1910571600
JJQL01000079
Euryarchaeota
Methanosarcina sp. 1.H.A.2.2 [JJQL]
224985
224911
-
Val
CAC
[ENA]
¡û
>W1910572259
JJQY01000048
Euryarchaeota
Methanosarcina sp. 1.H.T.1A.1 [JJQY]
82805
82731
-
Val
CAC
[ENA]
¡û
>W1910617162
LHQS01000001
Euryarchaeota
Methanoculleus taiwanensis CYW4 [LHQS]
32813
32740
-
Val
CAC
[ENA]
¡û
>W1911581313
PGCL01000001
Euryarchaeota
Methanofollis fontis FWC-SCC2 [PGCL]
543844
543769
-
Val
CAC
[ENA]
¡û
>W1610003500
AGCO01000007
Euryarchaeota
Methanofollis liminatans DSM 4140 [AGCO]
964493
964568
+
Val
CAC
[ENA]
¡û
>W1610605034
LFRN01000210
Euryarchaeota
Candidatus Methanoculleus thermohydrogenotrophicum DTU006 [LFRN]
95
22
-
Val
CAC
[ENA]
¡û
>W1610605114
LFRP01000035
Euryarchaeota
Methanosarcina sp. DTU009 [LFRP]
14853
14927
+
Val
CAC
[ENA]
¡û
>W1610670247
LKAZ01000036
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
12974
13048
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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