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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147822 (29 seq.)
>W1710877178
LMPW01000013
Bacteroidota
Flavobacterium sp. Leaf359 [LMPW]
91796
91876
+
Leu
CAA
[ENA]
¡û
>W131225322
AUDM01000002
Bacteroidota
Flavobacterium filum DSM 17961 [AUDM]
265912
265830
-
Leu
CAA
[ENA]
¡û
>W131229170
AUGP01000009
Bacteroidota
Flavobacterium subsaxonicum DSM 21790 [AUGP]
160
78
-
Leu
CAA
[ENA]
¡û
>W1711505196
MKVG01000016
Bacteroidota
Flavobacterium sp. 38-13 [MKVG]
331925
331845
-
Leu
CAA
[ENA]
¡û
>C171016696
CP012388
Bacteroidota
Flavobacterium psychrophilum Z1 [CP012388]
2096315
2096235
-
Leu
CAA
-
¡û
>w023480
AAXX01000001
Bacteroidota
Flavobacteria bacterium BAL38 [AAXX]
960495
960411
-
Leu
CAA
[ENA]
¡û
>WENV181731132
OGQD01000053
[OGQD] human gut metagenome; faeces
26156
26236
+
Leu
CAA
[ENA]
¢þ
>WENV181843863
OGVV01000291
[OGVV] freshwater metagenome; freshwater
5701
5781
+
Leu
CAA
[ENA]
¢þ
>WENV170003139
AGTN01236657
[AGTN] bioreactor metagenome; poplar biomass
664
584
-
Leu
CAA
[ENA]
¢þ
>WENV170004319
AGTN01636456
[AGTN] bioreactor metagenome; poplar biomass
102
22
-
Leu
CAA
[ENA]
¢þ
>WENV170004491
AGTN01698676
[AGTN] bioreactor metagenome; poplar biomass
76
156
+
Leu
CAA
[ENA]
¢þ
>WENV170228759
CEQG01038458
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
13708
13790
+
Leu
CAA
[ENA]
¢þ
>WENV170247158
CEQQ01019543
[CEQQ] marine metagenome genome assembly TARA_076_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
319
401
+
Leu
CAA
[ENA]
¢þ
>WENV170379814
CETV01226376
[CETV] marine metagenome genome assembly TARA_133_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
448
528
+
Leu
CAA
[ENA]
¢þ
>WENV170680895
LFEF01031378
[LFEF] freshwater metagenome; waterbloom
23083
23001
-
Leu
CAA
[ENA]
¢þ
>C181047499
CP020919
Bacteroidota
Flavobacterium kingsejongi WV39 [CP020919]
1437030
1436950
-
Leu
CAA
-
¡û
>C181175886
CP029186
Bacteroidota
Flavobacterium album HYN0059 [CP029186]
1302032
1302112
+
Leu
CAA
-
¡û
>C181196565
CP031188
Bacteroidota
Flavobacterium arcticum SM1502 [CP031188]
1042049
1041969
-
Leu
CAA
-
¡û
>W1910577967
JUIW01000011
Bacteroidota
Flavobacterium beibuense RSKm HC5 [JUIW]
183362
183282
-
Leu
CAA
[ENA]
¡û
>W1911139374
NOXV01000290
Bacteroidota
Flavobacterium cyanobacteriorum TH021 [NOXV]
8985
8905
-
Leu
CAA
[ENA]
¡û
>W1810173568
PJND01000007
Bacteroidota
Flavobacterium lindanitolerans IP-10 [PJND]
331292
331212
-
Leu
CAA
[ENA]
¡û
>W1810762856
QQAR01000008
Bacteroidota
Flavobacterium sp. AG291 [QQAR]
176629
176549
-
Leu
CAA
[ENA]
¡û
>C161042852
CP012586
Bacteroidota
Flavobacterium psychrophilum Z2 [CP012586]
2096289
2096209
-
Leu
CAA
-
¡û
>W1610535026
JRLV01000018
Bacteroidota
Flavobacterium beibuense F44-8 [JRLV]
73413
73331
-
Leu
CAA
[ENA]
¡û
>W1610535147
JRLY01000034
Bacteroidota
Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790 [JRLY]
22153
22235
+
Leu
CAA
[ENA]
¡û
>W1610739524
LMPW01000013
Bacteroidota
Flavobacterium sp. Leaf359 [LMPW]
91796
91876
+
Leu
CAA
[ENA]
¡û
>W1710574118
FOYA01000005
Bacteroidota
Flavobacterium akiainvivens [FOYA]
120645
120725
+
Leu
CAA
[ENA]
¡û
>W1710637262
JRLV01000018
Bacteroidota
Flavobacterium beibuense F44-8 [JRLV]
73413
73331
-
Leu
CAA
[ENA]
¡û
>W1710637383
JRLY01000034
Bacteroidota
Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790 [JRLY]
22153
22235
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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