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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147867 (77 seq.)
>W1711115579
LUAH01000038
Bacteroidota
Sphingobacterium sp. HMSC13C05 [LUAH]
223486
223561
+
His
GTG
[ENA]
¡û
>W1711115582
LUAH01000039
Bacteroidota
Sphingobacterium sp. HMSC13C05 [LUAH]
33740
33815
+
His
GTG
[ENA]
¡û
>W131205436
ATDL01000014
Bacteroidota
Sphingobacterium paucimobilis 1398 [ATDL]
307672
307746
+
His
GTG
[ENA]
¡û
>W1711506296
MKWH01000018
Bacteroidota
Sphingobacterium sp. 40-24 [MKWH]
106250
106175
-
His
GTG
[ENA]
¡û
>W1711506310
MKWH01000032
Bacteroidota
Sphingobacterium sp. 40-24 [MKWH]
222
147
-
His
GTG
[ENA]
¡û
>W1711712750
MTCM01000001
Bacteroidota
Sphingobacterium sp. CZ-UAM [MTCM]
866834
866759
-
His
GTG
[ENA]
¡û
>W1711712751
MTCM01000001
Bacteroidota
Sphingobacterium sp. CZ-UAM [MTCM]
793455
793380
-
His
GTG
[ENA]
¡û
>C171089539
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
3496305
3496230
-
His
GTG
-
¡û
>C171089540
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
3437859
3437784
-
His
GTG
-
¡û
>C171118489
CP021381
Bacteroidota
Sphingobacterium sp. G1-14 [CP021381]
3066005
3065930
-
His
GTG
-
¡û
>C171118490
CP021381
Bacteroidota
Sphingobacterium sp. G1-14 [CP021381]
3005081
3005006
-
His
GTG
-
¡û
>WENV183726658
PJTO01000053
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
62631
62705
+
His
GTG
[ENA]
¢þ
>WENV183726901
PJTO01000463
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
15619
15693
+
His
GTG
[ENA]
¢þ
>WENV183727625
PJTP01000046
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
62631
62705
+
His
GTG
[ENA]
¢þ
>WENV183728176
PJTP01055466
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
272
198
-
His
GTG
[ENA]
¢þ
>WENV183728487
PJTQ01000078
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
113989
113915
-
His
GTG
[ENA]
¢þ
>WENV183728836
PJTQ01000662
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
15619
15693
+
His
GTG
[ENA]
¢þ
>WENV183729611
PJTQ01090207
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
10
84
+
His
GTG
[ENA]
¢þ
>WENV183730297
PJTR01017119
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
455
381
-
His
GTG
[ENA]
¢þ
>WENV183730547
PJTS01000119
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
23387
23313
-
His
GTG
[ENA]
¢þ
>WENV183730761
PJTS01000599
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
18459
18385
-
His
GTG
[ENA]
¢þ
>WENV183732324
PJTX01000013
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
15878
15804
-
His
GTG
[ENA]
¢þ
>WENV183732344
PJTX01000035
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
39659
39585
-
His
GTG
[ENA]
¢þ
>WENV183732976
PJTY01000011
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
239017
238943
-
His
GTG
[ENA]
¢þ
>WENV183732977
PJTY01000011
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
178079
178005
-
His
GTG
[ENA]
¢þ
>WENV183733979
PJTZ01000011
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
297929
297855
-
His
GTG
[ENA]
¢þ
>WENV183733980
PJTZ01000011
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
236991
236917
-
His
GTG
[ENA]
¢þ
>WENV183734841
PJUA01000049
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
83177
83103
-
His
GTG
[ENA]
¢þ
>WENV183735047
PJUA01000594
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
15619
15693
+
His
GTG
[ENA]
¢þ
>WENV183735265
PJUA01006466
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
1299
1225
-
His
GTG
[ENA]
¢þ
>WENV183735542
PJUB01000039
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
62631
62705
+
His
GTG
[ENA]
¢þ
>WENV183735673
PJUB01000439
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
272
198
-
His
GTG
[ENA]
¢þ
>WENV183735767
PJUB01001850
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
1800
1726
-
His
GTG
[ENA]
¢þ
>WENV183736530
PJUC01009291
[PJUC] soil metagenome; Soil enriched on filter paper
588
514
-
His
GTG
[ENA]
¢þ
>WENV183736618
PJUC01024599
[PJUC] soil metagenome; Soil enriched on filter paper
10
84
+
His
GTG
[ENA]
¢þ
>WENV183736772
PJUD01000020
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
223343
223269
-
His
GTG
[ENA]
¢þ
>WENV183736773
PJUD01000020
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
162393
162319
-
His
GTG
[ENA]
¢þ
>WENV183736846
PJUD01000057
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
46169
46243
+
His
GTG
[ENA]
¢þ
>WENV183736847
PJUD01000057
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
107122
107196
+
His
GTG
[ENA]
¢þ
>WENV183738639
PJUE01000057
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
46169
46243
+
His
GTG
[ENA]
¢þ
>WENV183738640
PJUE01000057
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
107122
107196
+
His
GTG
[ENA]
¢þ
>WENV183738692
PJUE01000109
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
46169
46243
+
His
GTG
[ENA]
¢þ
>WENV183738693
PJUE01000109
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
107119
107193
+
His
GTG
[ENA]
¢þ
>WENV183740209
PJUF01000717
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
16373
16299
-
His
GTG
[ENA]
¢þ
>WENV183740545
PJUF01003313
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
5473
5399
-
His
GTG
[ENA]
¢þ
>WENV183740604
PJUF01004172
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
4284
4358
+
His
GTG
[ENA]
¢þ
>WENV183740924
PJUF01018514
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
45
119
+
His
GTG
[ENA]
¢þ
>WENV183740950
PJUF01020683
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
910
984
+
His
GTG
[ENA]
¢þ
>WENV183740980
PJUF01023738
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
974
900
-
His
GTG
[ENA]
¢þ
>WENV183741396
PJUG01000003
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
583702
583776
+
His
GTG
[ENA]
¢þ
>WENV183741437
PJUG01000012
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
49385
49459
+
His
GTG
[ENA]
¢þ
>WENV183741888
PJUH01000002
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
583702
583776
+
His
GTG
[ENA]
¢þ
>WENV183741889
PJUH01000002
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
637482
637556
+
His
GTG
[ENA]
¢þ
>WENV183742490
PJUI01000004
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
583702
583776
+
His
GTG
[ENA]
¢þ
>WENV183742491
PJUI01000004
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
637482
637556
+
His
GTG
[ENA]
¢þ
>WENV183742973
PJUJ01000002
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
406290
406216
-
His
GTG
[ENA]
¢þ
>WENV183742974
PJUJ01000002
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
352510
352436
-
His
GTG
[ENA]
¢þ
>WENV183743203
PJUJ01000149
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
49132
49058
-
His
GTG
[ENA]
¢þ
>WENV183743204
PJUJ01000149
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
47900
47826
-
His
GTG
[ENA]
¢þ
>WENV183743807
PJUK01000003
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
583702
583776
+
His
GTG
[ENA]
¢þ
>WENV183743808
PJUK01000003
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
637482
637556
+
His
GTG
[ENA]
¢þ
>C191222309
LR590484
Bacteroidota
Sphingobacterium thalpophilum NCTC11429 [LR590484]
5114700
5114774
+
His
GTG
-
¡û
>C191222310
LR590484
Bacteroidota
Sphingobacterium thalpophilum NCTC11429 [LR590484]
5175663
5175737
+
His
GTG
-
¡û
>W141701974
JMLD01000014
Bacteroidota
Sphingobacterium thalpophilum DSM 11723 [JMLD]
154709
154634
-
His
GTG
[ENA]
¡û
>W141701975
JMLD01000014
Bacteroidota
Sphingobacterium thalpophilum DSM 11723 [JMLD]
93746
93670
-
His
GTG
[ENA]
¡û
>W1910664397
MCAQ01000028
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
54541
54615
+
His
GTG
[ENA]
¡û
>W1910664398
MCAQ01000028
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
113470
113544
+
His
GTG
[ENA]
¡û
>W1810002549
BEYR01000001
Bacteroidota
Sphingobacterium sp. HMA12 [BEYR]
1441422
1441348
-
His
GTG
[ENA]
¡û
>W1810002550
BEYR01000001
Bacteroidota
Sphingobacterium sp. HMA12 [BEYR]
1371753
1371679
-
His
GTG
[ENA]
¡û
>W1810531916
QCXX01000003
Bacteroidota
Sphingobacterium athyrii M46 [QCXX]
622895
622821
-
His
GTG
[ENA]
¡û
>W1810531917
QCXX01000003
Bacteroidota
Sphingobacterium athyrii M46 [QCXX]
552569
552495
-
His
GTG
[ENA]
¡û
>W1511499236
JXAC01000033
Bacteroidota
Sphingobacterium sp. T2 [JXAC]
31190
31265
+
His
GTG
[ENA]
¡û
>W1511499271
JXAC01000178
Bacteroidota
Sphingobacterium sp. T2 [JXAC]
11081
11007
-
His
GTG
[ENA]
¡û
>W1511590274
LBGU01000034
Bacteroidota
Sphingobacterium sp. Ag1 [LBGU]
123212
123287
+
His
GTG
[ENA]
¡û
>W1511590290
LBGU01000044
Bacteroidota
Sphingobacterium sp. Ag1 [LBGU]
999862
999787
-
His
GTG
[ENA]
¡û
>W1710576353
FOZZ01000001
Bacteroidota
Sphingobacterium wenxiniae [FOZZ]
73603
73679
+
His
GTG
[ENA]
¡û
>W1710603627
FUZF01000003
Bacteroidota
Sphingobacterium nematocida [FUZF]
148555
148481
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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