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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147878 (96 seq.)
>W1710932016
LOHU01000078
Alphaproteobacteria
Phaeobacter inhibens [LOHU]
173507
173431
-
Met
CAT
[ENA]
¡û
>W1711282584
LZNT01000055
Alphaproteobacteria
Ruegeria sp. PBVC088 [LZNT]
96084
96008
-
Met
CAT
[ENA]
¡û
>W1712106678
NIVZ01000005
Alphaproteobacteria
Mameliella alba atlantica [NIVZ]
224025
224101
+
Met
CAT
[ENA]
¡û
>W1712106724
NIWA01000005
Alphaproteobacteria
Mameliella alba lacteus [NIWA]
276805
276881
+
Met
CAT
[ENA]
¡û
>W1712106753
NIWB01000001
Alphaproteobacteria
Mameliella alba pacificum [NIWB]
373830
373906
+
Met
CAT
[ENA]
¡û
>W1712106823
NIWC01000006
Alphaproteobacteria
Mameliella alba phaeodactyli [NIWC]
97456
97380
-
Met
CAT
[ENA]
¡û
>w023655
AAYB01000001
Alphaproteobacteria
Roseobacter sp. CCS2 [AAYB]
307047
307125
+
Met
CAT
[ENA]
¡û
>w023628
AAYA01000003
Alphaproteobacteria
Sagittula stellata E-37 [AAYA]
43376
43303
-
Met
CAT
[ENA]
¡û
>C171047853
CP016364
Alphaproteobacteria
Phaeobacter porticola P97 [CP016364]
465612
465688
+
Met
CAT
-
¡û
>C171092063
CP019307
Alphaproteobacteria
Phaeobacter inhibens DOK1-1 [CP019307]
1766316
1766240
-
Met
CAT
-
¡û
>WENV180209453
OBAL01000952
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
3171
3247
+
Met
CAT
[ENA]
¢þ
>WENV180394340
OBPS01001532
[OBPS] marine metagenome; ENVO:00002010 seawater
2894
2818
-
Met
CAT
[ENA]
¢þ
>WENV180395406
OBPT01016463
[OBPT] marine metagenome; ENVO:00002010 seawater
419
495
+
Met
CAT
[ENA]
¢þ
>WENV180635383
OCRD01018193
[OCRD] marine metagenome; seawater
200
124
-
Met
CAT
[ENA]
¢þ
>W141142902
AWRV01000196
Alphaproteobacteria
Rhodobacteraceae bacterium PD-2 [AWRV]
29663
29587
-
Met
CAT
[ENA]
¡û
>W141151450
AXBB01000002
Alphaproteobacteria
Phaeobacter inhibens DSM 16374 [AXBB]
670863
670939
+
Met
CAT
[ENA]
¡û
>W08005775
ABIE01000001
Alphaproteobacteria
Phaeobacter inhibens 2.1 [ABIE]
162155
162231
+
Met
CAT
[ENA]
¡û
>W08005845
ABIF01000002
Alphaproteobacteria
Phaeobacter inhibens BS107 [ABIF]
487953
487880
-
Met
CAT
[ENA]
¡û
>WENV170022593
BCQK01023967
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
687
763
+
Met
CAT
[ENA]
¢þ
>WENV170023765
BCQL01002768
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
393
317
-
Met
CAT
[ENA]
¢þ
>WENV170023910
BCQL01009442
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
1478
1402
-
Met
CAT
[ENA]
¢þ
>C181008412
CP010588
Alphaproteobacteria
Phaeobacter gallaeciensis P11 [CP010588]
375605
375681
+
Met
CAT
-
¡û
>C181008494
CP010595
Alphaproteobacteria
Phaeobacter inhibens P10 [CP010595]
3178941
3178865
-
Met
CAT
-
¡û
>C181008526
CP010599
Alphaproteobacteria
Phaeobacter inhibens P83 [CP010599]
283541
283617
+
Met
CAT
-
¡û
>C181008608
CP010610
Alphaproteobacteria
Phaeobacter inhibens P92 [CP010610]
3089685
3089609
-
Met
CAT
-
¡û
>C181008665
CP010617
Alphaproteobacteria
Phaeobacter inhibens P30 [CP010617]
3037328
3037252
-
Met
CAT
-
¡û
>C181008722
CP010623
Alphaproteobacteria
Phaeobacter inhibens P51 [CP010623]
3006940
3006864
-
Met
CAT
-
¡û
>C181008757
CP010629
Alphaproteobacteria
Phaeobacter inhibens P78 [CP010629]
379468
379544
+
Met
CAT
-
¡û
>C181008814
CP010636
Alphaproteobacteria
Phaeobacter gallaeciensis P73 [CP010636]
375604
375680
+
Met
CAT
-
¡û
>C181008895
CP010643
Alphaproteobacteria
Phaeobacter piscinae P36 [CP010643]
2968332
2968256
-
Met
CAT
-
¡û
>C181008952
CP010650
Alphaproteobacteria
Phaeobacter inhibens P54 [CP010650]
3051625
3051549
-
Met
CAT
-
¡û
>C181008985
CP010656
Alphaproteobacteria
Phaeobacter piscinae P71 [CP010656]
221579
221655
+
Met
CAT
-
¡û
>C181009066
CP010661
Alphaproteobacteria
Phaeobacter inhibens P74 [CP010661]
3091361
3091285
-
Met
CAT
-
¡û
>C181009123
CP010668
Alphaproteobacteria
Phaeobacter inhibens P57 [CP010668]
3005466
3005390
-
Met
CAT
-
¡û
>C181009157
CP010673
Alphaproteobacteria
Phaeobacter gallaeciensis P75 [CP010673]
375605
375681
+
Met
CAT
-
¡û
>C181009238
CP010681
Alphaproteobacteria
Phaeobacter piscinae P14 [CP010681]
2956318
2956242
-
Met
CAT
-
¡û
>C181009295
CP010689
Alphaproteobacteria
Phaeobacter piscinae P42 [CP010689]
2968332
2968256
-
Met
CAT
-
¡û
>C181009352
CP010696
Alphaproteobacteria
Phaeobacter inhibens P24 [CP010696]
3058791
3058715
-
Met
CAT
-
¡û
>C181009386
CP010705
Alphaproteobacteria
Phaeobacter inhibens P66 [CP010705]
276732
276808
+
Met
CAT
-
¡û
>C181009468
CP010715
Alphaproteobacteria
Phaeobacter piscinae P18 [CP010715]
2928571
2928495
-
Met
CAT
-
¡û
>C181009525
CP010725
Alphaproteobacteria
Phaeobacter inhibens P88 [CP010725]
3191377
3191301
-
Met
CAT
-
¡û
>C181009581
CP010735
Alphaproteobacteria
Phaeobacter inhibens P72 [CP010735]
3159911
3159835
-
Met
CAT
-
¡û
>C181009638
CP010741
Alphaproteobacteria
Phaeobacter inhibens P59 [CP010741]
3063078
3063002
-
Met
CAT
-
¡û
>C181009695
CP010745
Alphaproteobacteria
Phaeobacter inhibens P48 [CP010745]
3085748
3085672
-
Met
CAT
-
¡û
>C181009752
CP010749
Alphaproteobacteria
Phaeobacter inhibens P70 [CP010749]
3089684
3089608
-
Met
CAT
-
¡û
>C181009785
CP010756
Alphaproteobacteria
Phaeobacter inhibens P80 [CP010756]
283542
283618
+
Met
CAT
-
¡û
>C181009867
CP010767
Alphaproteobacteria
Phaeobacter piscinae P13 [CP010767]
2953877
2953801
-
Met
CAT
-
¡û
>C181009901
CP010784
Alphaproteobacteria
Phaeobacter gallaeciensis P63 [CP010784]
375605
375681
+
Met
CAT
-
¡û
>C181009982
CP010805
Alphaproteobacteria
Phaeobacter piscinae P23 [CP010805]
2968332
2968256
-
Met
CAT
-
¡û
>C181048961
CP021040
Alphaproteobacteria
Phaeobacter gallaeciensis P129 [CP021040]
392485
392561
+
Met
CAT
-
¡û
>C181049018
CP021047
Alphaproteobacteria
Phaeobacter gallaeciensis P128 [CP021047]
392485
392561
+
Met
CAT
-
¡û
>C181054578
CP021913
Alphaproteobacteria
Sagittula sp. P11 [CP021913]
3277472
3277396
-
Met
CAT
-
¡û
>C181068117
CP022540
Alphaproteobacteria
Antarctobacter heliothermus SMS3 [CP022540]
4597868
4597944
+
Met
CAT
-
¡û
>C191083152
CP031948
Alphaproteobacteria
Phaeobacter inhibens BS107 [CP031948]
3129695
3129619
-
Met
CAT
-
¡û
>C191083208
CP031952
Alphaproteobacteria
Phaeobacter inhibens 2.10 [CP031952]
3103013
3102937
-
Met
CAT
-
¡û
>C191083266
CP031956
Alphaproteobacteria
Phaeobacter sp. LSS9 [CP031956]
2068539
2068463
-
Met
CAT
-
¡û
>W09112119
ABXM01000015
Alphaproteobacteria
Ruegeria sp. R11 [ABXM]
84271
84347
+
Met
CAT
[ENA]
¡û
>W1910285108
FREV01000004
Alphaproteobacteria
Loktanella sp. Alg231-35 [FREV]
298224
298300
+
Met
CAT
[ENA]
¡û
>C141011164
CP006966
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [CP006966]
375708
375784
+
Met
CAT
[Ensembl]
¡û
>W1910499774
FXYF01000006
Alphaproteobacteria
Maliponia aquimaris CECT 8898 [FXYF]
207134
207210
+
Met
CAT
[ENA]
¡û
>W1910548457
FZON01000025
Alphaproteobacteria
Antarctobacter heliothermus DSM 11445 [FZON]
36500
36576
+
Met
CAT
[ENA]
¡û
>W1911538467
OMOJ01000006
Alphaproteobacteria
Pseudoprimorskyibacter insulae CECT 8871 [OMOJ]
6734
6658
-
Met
CAT
[ENA]
¡û
>W1810102057
PGTY01000003
Alphaproteobacteria
Yoonia maricola DSM 29128 [PGTY]
243127
243203
+
Met
CAT
[ENA]
¡û
>W1810185219
PKFN01000008
Alphaproteobacteria
Yoonia maritima YPC211 [PKFN]
566148
566224
+
Met
CAT
[ENA]
¡û
>W1810364796
PVTN01000005
Alphaproteobacteria
Marivita geojedonensis DSM 29432 [PVTN]
62946
62870
-
Met
CAT
[ENA]
¡û
>W1810364919
PVTP01000004
Alphaproteobacteria
Yoonia maritima DSM 101533 [PVTP]
102857
102781
-
Met
CAT
[ENA]
¡û
>W1810477617
QAOY01000004
Alphaproteobacteria
Mameliella alba DSM 26384 [QAOY]
276930
277006
+
Met
CAT
[ENA]
¡û
>W1810514052
QBUD01000017
Alphaproteobacteria
Yoonia sediminilitoris DSM 29955 [QBUD]
25303
25227
-
Met
CAT
[ENA]
¡û
>W1810584271
QFAR01000001
Alphaproteobacteria
Pelagicola sp. LXJ1103 [QFAR]
1042992
1043068
+
Met
CAT
[ENA]
¡û
>W1810658646
QJJL01000003
Alphaproteobacteria
Loktanella sp. PT4BL [QJJL]
388440
388364
-
Met
CAT
[ENA]
¡û
>W1810759671
QPJP01000017
Alphaproteobacteria
Yoonia sediminilitoris CECT 8284 [QPJP]
25303
25227
-
Met
CAT
[ENA]
¡û
>W1810762287
QPMK01000012
Alphaproteobacteria
Thalassococcus profundi WRAS1 [QPMK]
105328
105404
+
Met
CAT
[ENA]
¡û
>W1510650449
CVQZ01000017
Alphaproteobacteria
Phaeobacter italicus CECT 7645 [CVQZ]
344697
344773
+
Met
CAT
[ENA]
¡û
>W1510650753
CVRL01000046
Alphaproteobacteria
Phaeobacter italicus CECT 7321 [CVRL]
42982
43058
+
Met
CAT
[ENA]
¡û
>W1510650785
CVRM01000022
Alphaproteobacteria
Phaeobacter italicus CECT 7645 [CVRM]
344697
344773
+
Met
CAT
[ENA]
¡û
>W1511387322
JSUQ01000003
Alphaproteobacteria
Mameliella alba UMTAT08 [JSUQ]
306300
306376
+
Met
CAT
[ENA]
¡û
>W1511388773
JSWJ01000014
Alphaproteobacteria
Phaeobacter sp. S60 [JSWJ]
18086
18010
-
Met
CAT
[ENA]
¡û
>W1511388833
JSWK01000016
Alphaproteobacteria
Phaeobacter piscinae S26 [JSWK]
168322
168246
-
Met
CAT
[ENA]
¡û
>W1511518655
JXYE01000002
Alphaproteobacteria
Loktanella sp. S4079 [JXYE]
1379992
1380068
+
Met
CAT
[ENA]
¡û
>W1511583817
LAUK01000010
Alphaproteobacteria
Nautella sp. ECSMB14104 [LAUK]
25367
25443
+
Met
CAT
[ENA]
¡û
>C121003797
CP002972
Alphaproteobacteria
Phaeobacter inhibens 2.10 [CP002972]
3102954
3102878
-
Met
CAT
[Ensembl]
¡û
>C121003855
CP002976
Alphaproteobacteria
Phaeobacter inhibens DSM 17395 [CP002976]
3168662
3168586
-
Met
CAT
-
¡û
>W1610016169
AOQA01000010
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [AOQA]
179111
179035
-
Met
CAT
[ENA]
¡û
>W1610628532
LIGP01000002
Alphaproteobacteria
Loktanella sp. 1ANDIMAR09 [LIGP]
324917
324841
-
Met
CAT
[ENA]
¡û
>W1610641289
LJAL01000004
Alphaproteobacteria
Loktanella sp. 5RATIMAR09 [LJAL]
238162
238238
+
Met
CAT
[ENA]
¡û
>W1610789485
LOHU01000078
Alphaproteobacteria
Phaeobacter inhibens [LOHU]
173507
173431
-
Met
CAT
[ENA]
¡û
>W1710013060
AOQA01000010
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [AOQA]
179111
179035
-
Met
CAT
[ENA]
¡û
>W1710512336
FMZI01000005
Alphaproteobacteria
Mameliella alba [FMZI]
277016
277092
+
Met
CAT
[ENA]
¡û
>W1710538987
FNUZ01000001
Alphaproteobacteria
Thalassococcus halodurans [FNUZ]
464822
464898
+
Met
CAT
[ENA]
¡û
>W1710555043
FOIZ01000002
Alphaproteobacteria
Cognatiyoonia koreensis [FOIZ]
49021
49097
+
Met
CAT
[ENA]
¡û
>W1710562485
FOOZ01000005
Alphaproteobacteria
Phaeobacter italicus italica [FOOZ]
88332
88408
+
Met
CAT
[ENA]
¡û
>W1710575805
FOZM01000001
Alphaproteobacteria
Yoonia litorea [FOZM]
361120
361044
-
Met
CAT
[ENA]
¡û
>W1710586334
FQXC01000004
Alphaproteobacteria
Marivita hallyeonensis [FQXC]
592766
592842
+
Met
CAT
[ENA]
¡û
>W1710600099
FTPR01000001
Alphaproteobacteria
Yoonia rosea [FTPR]
1851238
1851314
+
Met
CAT
[ENA]
¡û
>W1710616687
JFKC01000004
Alphaproteobacteria
Marivita geojedonensis [JFKC]
62853
62777
-
Met
CAT
[ENA]
¡û
>W1710616733
JFKD01000006
Alphaproteobacteria
Marivita cryptomonadis [JFKD]
84452
84376
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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