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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147890 (57 seq.)
>C171097683
CP019645
Campylobacterota
Helicobacter bilis AAQJH [CP019645]
1372100
1372176
+
His
GTG
-
¡û
>W131145066
AQFW01000004
Campylobacterota
Helicobacter bilis WiWa [AQFW]
80482
80558
+
His
GTG
[ENA]
¡û
>C010552
AE017125
Campylobacterota
Helicobacter hepaticus ATCC 51449 [AE017125]
36945
37021
+
His
GTG
[Ensembl]
¡û
>WENV181537848
OGHX01007780
[OGHX] metagenome; Human gut stool
414
338
-
His
GTG
[ENA]
¢þ
>WENV170980993
MWVT01014963
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
640
714
+
His
GTG
[ENA]
¢þ
>WENV170981669
MWVT01167442
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
325
400
+
His
GTG
[ENA]
¢þ
>WENV170982520
MWVU01129825
[MWVU] soil metagenome; TG1-5 sample; Antarctic (ecotone) soil
423
348
-
His
GTG
[ENA]
¢þ
>WENV170983355
MWVV01025222
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
1310
1236
-
His
GTG
[ENA]
¢þ
>WENV170983754
MWVV01084686
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
166
91
-
His
GTG
[ENA]
¢þ
>WENV170985882
MWVX01005770
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
1708
1782
+
His
GTG
[ENA]
¢þ
>WENV170990130
MWVZ01229335
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
157
83
-
His
GTG
[ENA]
¢þ
>WENV170992750
MWWB01080172
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
149
223
+
His
GTG
[ENA]
¢þ
>C181213849
LS483446
Campylobacterota
Helicobacter mustelae NCTC12198 [LS483446]
111761
111837
+
His
GTG
-
¡û
>W09119143
ACDN01000081
Campylobacterota
Helicobacter bilis ATCC 43879 [ACDN]
42534
42610
+
His
GTG
[ENA]
¡û
>W141701676
JMKW01000003
Campylobacterota
Helicobacter bilis ATCC 51630 [JMKW]
17596
17520
-
His
GTG
[ENA]
¡û
>W1910546219
FZML01000003
Campylobacterota
Helicobacter muridarum [FZML]
61182
61106
-
His
GTG
[ENA]
¡û
>W1910546271
FZMM01000013
Campylobacterota
Helicobacter muridarum [FZMM]
63657
63581
-
His
GTG
[ENA]
¡û
>W1910546316
FZMN01000032
Campylobacterota
Helicobacter muridarum [FZMN]
32388
32464
+
His
GTG
[ENA]
¡û
>W1910546497
FZMS01000048
Campylobacterota
Helicobacter bilis [FZMS]
380
456
+
His
GTG
[ENA]
¡û
>W1910546534
FZMT01000026
Campylobacterota
Helicobacter bilis [FZMT]
42828
42752
-
His
GTG
[ENA]
¡û
>W1910546787
FZND01000027
Campylobacterota
Helicobacter trogontum [FZND]
1889
1965
+
His
GTG
[ENA]
¡û
>W1910546866
FZNF01000029
Campylobacterota
Helicobacter trogontum [FZNF]
63822
63746
-
His
GTG
[ENA]
¡û
>W1910546890
FZNG01000016
Campylobacterota
Helicobacter trogontum [FZNG]
73970
74046
+
His
GTG
[ENA]
¡û
>W1910549611
FZPK01000006
Campylobacterota
Helicobacter rappini [FZPK]
44581
44505
-
His
GTG
[ENA]
¡û
>W1910549679
FZPM01000023
Campylobacterota
Helicobacter aurati [FZPM]
25799
25723
-
His
GTG
[ENA]
¡û
>W1910549787
FZPP01000006
Campylobacterota
Helicobacter marmotae [FZPP]
23756
23832
+
His
GTG
[ENA]
¡û
>W1910550316
FZQU01000005
Campylobacterota
Helicobacter sp. 'CLO3_human' [FZQU]
280920
280844
-
His
GTG
[ENA]
¡û
>W1910550477
FZQY01000004
Campylobacterota
Helicobacter sp. 'house sparrow 1' [FZQY]
281060
280984
-
His
GTG
[ENA]
¡û
>W1910550666
FZRC01000067
Campylobacterota
Helicobacter sp. 'CLO3_human' [FZRC]
32228
32152
-
His
GTG
[ENA]
¡û
>W1910756143
MLAO01000010
Campylobacterota
Helicobacter sp. 11S03491-1 [MLAO]
29505
29429
-
His
GTG
[ENA]
¡û
>W1910756167
MLAP01000004
Campylobacterota
Helicobacter sp. 12S02634-8 [MLAP]
42804
42880
+
His
GTG
[ENA]
¡û
>W1910756207
MLAQ01000007
Campylobacterota
Helicobacter sp. 12S02232-10 [MLAQ]
43720
43644
-
His
GTG
[ENA]
¡û
>W1910756295
MLAT01000002
Campylobacterota
Helicobacter sp. 13S00482-2 [MLAT]
87784
87708
-
His
GTG
[ENA]
¡û
>W1910914932
NHYK01000007
Campylobacterota
Helicobacter sp. 10-6591 [NHYK]
77376
77300
-
His
GTG
[ENA]
¡û
>W1810002969
BEZH01000119
Campylobacterota
Helicobacter cinaedi P14D1067 [BEZH]
38154
38078
-
His
GTG
[ENA]
¡û
>W1810003179
BEZN01000151
Campylobacterota
Helicobacter cinaedi P21D1863 [BEZN]
2712
2788
+
His
GTG
[ENA]
¡û
>W1810010852
BGKH01000150
Campylobacterota
Helicobacter cinaedi PAGU628 [BGKH]
2746
2822
+
His
GTG
[ENA]
¡û
>W1810046571
NXLQ01000017
Campylobacterota
Helicobacter didelphidarum MIT 17-337 [NXLQ]
39978
39902
-
His
GTG
[ENA]
¡û
>W1810046582
NXLR01000002
Campylobacterota
Helicobacter marmotae MIT 98-6070 [NXLR]
112223
112147
-
His
GTG
[ENA]
¡û
>W1810046774
NXLW01000010
Campylobacterota
Helicobacter aurati MIT 97-5075 [NXLW]
47656
47732
+
His
GTG
[ENA]
¡û
>W1810046789
NXLX01000001
Campylobacterota
Helicobacter anseris MIT 04-9362 [NXLX]
90364
90288
-
His
GTG
[ENA]
¡û
>C10107567
FN555004
Campylobacterota
Helicobacter mustelae 12198 [FN555004]
112960
113036
+
His
GTG
[Ensembl]
¡û
>W1511350752
JRMP01000178
Campylobacterota
Helicobacter saguini MIT 97-6194 [JRMP]
665735
665659
-
His
GTG
[ENA]
¡û
>W1511350787
JRMQ01000002
Campylobacterota
Helicobacter japonicus MIT 01-6451 [JRMQ]
289173
289097
-
His
GTG
[ENA]
¡û
>W1511350846
JRMS01000009
Campylobacterota
Helicobacter sp. MIT 03-1614 [JRMS]
31013
31089
+
His
GTG
[ENA]
¡û
>W1511353116
JROY01000037
Campylobacterota
Helicobacter sp. MIT 03-1616 [JROY]
18936
18860
-
His
GTG
[ENA]
¡û
>W1511353274
JRPD01000001
Campylobacterota
Helicobacter muridarum ST1 [JRPD]
40919
40995
+
His
GTG
[ENA]
¡û
>W1511353416
JRPG01000078
Campylobacterota
Helicobacter bilis ATCC 51630 [JRPG]
3267
3191
-
His
GTG
[ENA]
¡û
>W1511353436
JRPH01000001
Campylobacterota
Helicobacter bilis Missouri [JRPH]
1072400
1072476
+
His
GTG
[ENA]
¡û
>W1511353462
JRPI01000001
Campylobacterota
Helicobacter bilis ATCC 49314 [JRPI]
754792
754716
-
His
GTG
[ENA]
¡û
>W1511353493
JRPJ01000001
Campylobacterota
Helicobacter bilis ATCC 49320 [JRPJ]
162422
162498
+
His
GTG
[ENA]
¡û
>W1511353555
JRPK01000112
Campylobacterota
Helicobacter trogontum ATCC 49310 [JRPK]
1546
1470
-
His
GTG
[ENA]
¡û
>W1511353584
JRPL01000001
Campylobacterota
Helicobacter trogontum ATCC 700114 [JRPL]
837368
837292
-
His
GTG
[ENA]
¡û
>W1511353846
JRPR01000030
Campylobacterota
Helicobacter jaachi MIT 09-6949 [JRPR]
21251
21327
+
His
GTG
[ENA]
¡û
>C121001353
AP012344
Campylobacterota
Helicobacter cinaedi PAGU611 [AP012344]
807832
807908
+
His
GTG
[Ensembl]
¡û
>C161081196
CP014991
Campylobacterota
Helicobacter himalayensis YS1 [CP014991]
907933
907857
-
His
GTG
-
¡û
>C161108043
LN907858
Campylobacterota
Helicobacter typhlonius [LN907858]
1157481
1157557
+
His
GTG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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