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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147918 (16 seq.)
>W1711361061
MDKE01000011
Gammaproteobacteria
Oceanisphaera psychrotolerans [MDKE]
370639
370715
+
Pro
TGG
[ENA]
¡û
>W131180091
ARMW01000022
Gammaproteobacteria
Oceanimonas smirnovii ATCC BAA-899 [ARMW]
98345
98421
+
Pro
TGG
[ENA]
¡û
>C171118285
CP021376
Gammaproteobacteria
Oceanisphaera avium AMac2203 [CP021376]
2113804
2113728
-
Pro
TGG
-
¡û
>C171118286
CP021376
Gammaproteobacteria
Oceanisphaera avium AMac2203 [CP021376]
2113669
2113593
-
Pro
TGG
-
¡û
>C171118344
CP021377
Gammaproteobacteria
Oceanisphaera profunda SM1222 [CP021377]
1869504
1869580
+
Pro
TGG
-
¡û
>C171118345
CP021377
Gammaproteobacteria
Oceanisphaera profunda SM1222 [CP021377]
1869626
1869702
+
Pro
TGG
-
¡û
>WENV170016306
AZIJ01022968
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
3801
3725
-
Pro
TGG
[ENA]
¢þ
>C181012450
CP012621
Gammaproteobacteria
Zobellella denitrificans F13-1 [CP012621]
3971490
3971414
-
Pro
TGG
-
¡û
>W1910784556
MPZM01000016
Gammaproteobacteria
Oceanisphaera arctica V1-41 [MPZM]
46765
46841
+
Pro
TGG
[ENA]
¡û
>W1910852625
NBIM01000003
Gammaproteobacteria
Oceanimonas doudoroffii ATCC 27123 [NBIM]
137550
137474
-
Pro
TGG
[ENA]
¡û
>W1911075379
NMUO01000012
Gammaproteobacteria
Zobellella denitrificans ZD1 [NMUO]
23307
23383
+
Pro
TGG
[ENA]
¡û
>W1911174165
NQJF01000007
Gammaproteobacteria
Oceanimonas baumannii ATCC 700832 [NQJF]
99455
99531
+
Pro
TGG
[ENA]
¡û
>W1810390144
PXYG01000004
Gammaproteobacteria
Zobellella endophytica 59N8 [PXYG]
115819
115895
+
Pro
TGG
[ENA]
¡û
>W1810471850
QAGM01000005
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
104695
104619
-
Pro
TGG
[ENA]
¡û
>W1810533084
QCZE01000002
Gammaproteobacteria
Zobellella maritima 102-Py4 [QCZE]
106186
106262
+
Pro
TGG
[ENA]
¡û
>C121007308
CP003171
Gammaproteobacteria
Oceanimonas sp. GK1 [CP003171]
596417
596493
+
Pro
TGG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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