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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147928 (85 seq.)
>W1710787535
LJJR01000016
Deinococcota
Thermus scotoductus [LJJR]
49014
48938
-
Met
CAT
[ENA]
¡û
>W131155588
AQOS01000001
Deinococcota
Thermus thermophilus ATCC 33923 [AQOS]
431
507
+
Met
CAT
[ENA]
¡û
>W131160725
AQWU01000061
Deinococcota
Thermus igniterrae ATCC 700962 [AQWU]
43134
43210
+
Met
CAT
[ENA]
¡û
>W131167507
ARDI01000003
Deinococcota
Thermus oshimai DSM 12092 [ARDI]
140052
140128
+
Met
CAT
[ENA]
¡û
>W131177895
ARLD01000068
Deinococcota
Thermus scotoductus DSM 8553 [ARLD]
40661
40737
+
Met
CAT
[ENA]
¡û
>W131218094
ATXJ01000004
Deinococcota
Thermus islandicus DSM 21543 [ATXJ]
149348
149272
-
Met
CAT
[ENA]
¡û
>W131231955
AUIW01000005
Deinococcota
Thermus antranikianii DSM 12462 [AUIW]
73672
73596
-
Met
CAT
[ENA]
¡û
>C025880
AE017221
Deinococcota
Thermus thermophilus HB27 [AE017221]
1143997
1144073
+
Met
CAT
[Ensembl]
¡û
>C025934
AP008226
Deinococcota
Thermus thermophilus HB8 [AP008226]
1465515
1465591
+
Met
CAT
[Ensembl]
¡û
>C171047210
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
1735162
1735238
+
Met
CAT
-
¡û
>WENV180015202
FQKF010419755
[FQKF] soil metagenome; Soil
1
77
+
Met
CAT
[ENA]
¢þ
>WENV180037087
FVAA010591202
[FVAA] soil metagenome; Soil
1
77
+
Met
CAT
[ENA]
¢þ
>W141080505
ATNI01000046
Deinococcota
Thermus sp. NMX2.A1 [ATNI]
12142
12066
-
Met
CAT
[ENA]
¡û
>WENV181227807
OFDN01048665
[OFDN] hot springs metagenome; Water
950
874
-
Met
CAT
[ENA]
¢þ
>WENV181404590
OGCA01019553
[OGCA] hot springs metagenome; Conch Spring, Yellowstone National Park, Wyoming, USA
143
219
+
Met
CAT
[ENA]
¢þ
>WENV181404715
OGCB01000089
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
13203
13279
+
Met
CAT
[ENA]
¢þ
>WENV181405492
OGCE01000188
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
13497
13573
+
Met
CAT
[ENA]
¢þ
>WENV181407983
OGCH01000325
[OGCH] hot springs metagenome; hot springs
23678
23754
+
Met
CAT
[ENA]
¢þ
>W08011564
ABVK01000001
Deinococcota
Thermus aquaticus Y51MC23 [ABVK]
394518
394594
+
Met
CAT
[ENA]
¡û
>WENV170700901
LJSS01006785
[LJSS] hot springs metagenome; water from Lobios Hot Spring
3
79
+
Met
CAT
[ENA]
¢þ
>C181003574
AP017920
Deinococcota
Thermus thermophilus TMY [AP017920]
1681915
1681839
-
Met
CAT
-
¡û
>C191159689
CP038452
Deinococcota
Thermus caldilimi YIM 78456 [CP038452]
1125360
1125284
-
Met
CAT
-
¡û
>C191190036
LR027517
Deinococcota
Thermus thermophilus [LR027517]
75490
75414
-
Met
CAT
-
¡û
>W141818270
JQLJ01000001
Deinococcota
Thermus scotoductus KI2 [JQLJ]
1128186
1128110
-
Met
CAT
[ENA]
¡û
>W141818286
JQLK01000001
Deinococcota
Thermus tengchongensis YIM 77401 [JQLK]
1097926
1098002
+
Met
CAT
[ENA]
¡û
>W141820370
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
1447238
1447162
-
Met
CAT
[ENA]
¡û
>W141820735
JQNC01000003
Deinococcota
Thermus caliditerrae [JQNC]
241098
241174
+
Met
CAT
[ENA]
¡û
>W1911578785
PELL01000033
Deinococcota
Thermus scotoductus 39_S39 [PELL]
12414
12338
-
Met
CAT
[ENA]
¡û
>W1911578832
PELM01000033
Deinococcota
Thermus scotoductus 38_S38 [PELM]
13546
13622
+
Met
CAT
[ENA]
¡û
>W1911578833
PELM01000033
Deinococcota
Thermus scotoductus 38_S38 [PELM]
11261
11185
-
Met
CAT
[ENA]
¡û
>W1911578841
PELM01000122
Deinococcota
Thermus scotoductus 38_S38 [PELM]
5408
5332
-
Met
CAT
[ENA]
¡û
>W1911578885
PELN01000088
Deinococcota
Thermus scotoductus 37_S37 [PELN]
14273
14349
+
Met
CAT
[ENA]
¡û
>W1911578940
PELO01000144
Deinococcota
Thermus scotoductus 35_S35 [PELO]
12410
12334
-
Met
CAT
[ENA]
¡û
>W1911578982
PELP01000199
Deinococcota
Thermus scotoductus 34_S34 [PELP]
14248
14324
+
Met
CAT
[ENA]
¡û
>W1911579040
PELQ01000133
Deinococcota
Thermus scotoductus 33_S33 [PELQ]
12447
12523
+
Met
CAT
[ENA]
¡û
>W1911579084
PELR01000166
Deinococcota
Thermus scotoductus 32_S32 [PELR]
14234
14310
+
Met
CAT
[ENA]
¡û
>W1911579137
PELS01000267
Deinococcota
Thermus scotoductus 31_S31 [PELS]
3650
3574
-
Met
CAT
[ENA]
¡û
>W1911579184
PELT01000099
Deinococcota
Thermus scotoductus 30_S30 [PELT]
12419
12343
-
Met
CAT
[ENA]
¡û
>W1911579218
PELU01000055
Deinococcota
Thermus scotoductus 29_S29 [PELU]
5958
5882
-
Met
CAT
[ENA]
¡û
>W1911579296
PELV01000390
Deinococcota
Thermus scotoductus 28_S28 [PELV]
6380
6456
+
Met
CAT
[ENA]
¡û
>W1911579325
PELW01000155
Deinococcota
Thermus scotoductus 27_S27 [PELW]
4720
4644
-
Met
CAT
[ENA]
¡û
>W1911579383
PELX01000298
Deinococcota
Thermus scotoductus 26_S26 [PELX]
3631
3555
-
Met
CAT
[ENA]
¡û
>W1911579429
PELY01000177
Deinococcota
Thermus scotoductus 25_S25 [PELY]
6338
6414
+
Met
CAT
[ENA]
¡û
>W1911579492
PELZ01000481
Deinococcota
Thermus scotoductus 24_S24 [PELZ]
12433
12357
-
Met
CAT
[ENA]
¡û
>W1911579510
PEMA01000221
Deinococcota
Thermus scotoductus 23_S23 [PEMA]
12455
12531
+
Met
CAT
[ENA]
¡û
>W1911579566
PEMB01000277
Deinococcota
Thermus scotoductus 22_S22 [PEMB]
3631
3555
-
Met
CAT
[ENA]
¡û
>W1911579607
PEMC01000066
Deinococcota
Thermus scotoductus 21_S21 [PEMC]
12417
12341
-
Met
CAT
[ENA]
¡û
>W1911579657
PEMD01000099
Deinococcota
Thermus scotoductus 20_S20 [PEMD]
12427
12351
-
Met
CAT
[ENA]
¡û
>W1911579706
PEME01000144
Deinococcota
Thermus scotoductus 19_S19 [PEME]
12455
12531
+
Met
CAT
[ENA]
¡û
>W1911579776
PEMF01000417
Deinococcota
Thermus scotoductus 18_S18 [PEMF]
14249
14325
+
Met
CAT
[ENA]
¡û
>W1911579824
PEMG01000462
Deinococcota
Thermus scotoductus 17_S17 [PEMG]
14783
14859
+
Met
CAT
[ENA]
¡û
>W1911579846
PEMH01000144
Deinococcota
Thermus scotoductus 16_S16 [PEMH]
4112
4036
-
Met
CAT
[ENA]
¡û
>W1911579885
PEMI01000099
Deinococcota
Thermus scotoductus 15_S15 [PEMI]
6519
6443
-
Met
CAT
[ENA]
¡û
>W1911579932
PEMJ01000047
Deinococcota
Thermus scotoductus 14_S14 [PEMJ]
1274
1350
+
Met
CAT
[ENA]
¡û
>W1911580003
PEMK01000300
Deinococcota
Thermus scotoductus 13_S13 [PEMK]
12465
12541
+
Met
CAT
[ENA]
¡û
>W1911580043
PEML01000275
Deinococcota
Thermus scotoductus 12_S12 [PEML]
12440
12516
+
Met
CAT
[ENA]
¡û
>W1911580093
PEMM01000256
Deinococcota
Thermus scotoductus 11_S11 [PEMM]
11773
11849
+
Met
CAT
[ENA]
¡û
>W1911580120
PEMN01000011
Deinococcota
Thermus scotoductus 10_S10 [PEMN]
12435
12359
-
Met
CAT
[ENA]
¡û
>W1911580180
PEMO01000133
Deinococcota
Thermus scotoductus 9_S9 [PEMO]
6030
5954
-
Met
CAT
[ENA]
¡û
>W1911580219
PEMP01000099
Deinococcota
Thermus scotoductus 8_S8 [PEMP]
14247
14323
+
Met
CAT
[ENA]
¡û
>W1911580282
PEMQ01000257
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
12609
12685
+
Met
CAT
[ENA]
¡û
>W1911580350
PEMR01000292
Deinococcota
Thermus scotoductus 6_S6 [PEMR]
12454
12530
+
Met
CAT
[ENA]
¡û
>W1911580373
PEMS01000177
Deinococcota
Thermus scotoductus 5_S5 [PEMS]
4708
4632
-
Met
CAT
[ENA]
¡û
>W1911580419
PEMT01000055
Deinococcota
Thermus scotoductus 4_S4 [PEMT]
12446
12522
+
Met
CAT
[ENA]
¡û
>W1911580471
PEMU01000122
Deinococcota
Thermus scotoductus 3_S3 [PEMU]
12455
12531
+
Met
CAT
[ENA]
¡û
>W1911580525
PEMV01000292
Deinococcota
Thermus scotoductus 2_S2 [PEMV]
12427
12351
-
Met
CAT
[ENA]
¡û
>W1911580571
PEMW01000288
Deinococcota
Thermus scotoductus 1_S1 [PEMW]
1309
1385
+
Met
CAT
[ENA]
¡û
>W1810268421
PRDA01000002
Deinococcota
Thermus tenuipuniceus YIM 76954 [PRDA]
7372
7448
+
Met
CAT
[ENA]
¡û
>W1810605103
QGMX01000008
Deinococcota
Thermus caldifontis YIM 73026 [QGMX]
21103
21027
-
Met
CAT
[ENA]
¡û
>W1810889179
QURO01000004
Deinococcota
Thermus sediminis L198 [QURO]
631834
631758
-
Met
CAT
[ENA]
¡û
>W1511401690
JTJB01000023
Deinococcota
Thermus sp. 2.9 [JTJB]
2916
2840
-
Met
CAT
[ENA]
¡û
>C11123068
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
1751787
1751711
-
Met
CAT
[Ensembl]
¡û
>C11123187
CP002777
Deinococcota
Thermus thermophilus SG0.5JP17-16 [CP002777]
1497258
1497334
+
Met
CAT
[Ensembl]
¡û
>C121006424
CP003126
Deinococcota
Thermus sp. CCB_US3_UF1 [CP003126]
1634439
1634363
-
Met
CAT
[Ensembl]
¡û
>C121009756
CP003252
Deinococcota
Thermus thermophilus JL-18 [CP003252]
441777
441701
-
Met
CAT
[Ensembl]
¡û
>C161028699
CP010822
Deinococcota
Thermus aquaticus Y51MC23 [CP010822]
1354751
1354675
-
Met
CAT
-
¡û
>C161067113
CP014141
Deinococcota
Thermus parvatiensis RL [CP014141]
530989
530913
-
Met
CAT
[Ensembl]
¡û
>W121056041
AIJQ01000015
Deinococcota
Thermus parvatiensis RL [AIJQ]
69536
69612
+
Met
CAT
[ENA]
¡û
>W1610045317
BBBL01000082
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
4553
4629
+
Met
CAT
[ENA]
¡û
>W1610045397
BBBN01000032
Deinococcota
Thermus sp. JCM 17653 [BBBN]
3829
3905
+
Met
CAT
[ENA]
¡û
>C131002416
CP003249
Deinococcota
Thermus oshimai JL-2 [CP003249]
1637734
1637658
-
Met
CAT
[Ensembl]
¡û
>W1610651390
LJJR01000016
Deinococcota
Thermus scotoductus [LJJR]
49014
48938
-
Met
CAT
[ENA]
¡û
>W1710042158
BBBL01000082
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
4553
4629
+
Met
CAT
[ENA]
¡û
>W1710042238
BBBN01000032
Deinococcota
Thermus sp. JCM 17653 [BBBN]
3829
3905
+
Met
CAT
[ENA]
¡û
>W1710514662
FNBC01000034
Deinococcota
Thermus arciformis [FNBC]
20324
20248
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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