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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147939 (16 seq.)
>W1711124475
LUKD01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKD]
2084810
2084728
-
Leu
TAG
[ENA]
¡û
>W1711124510
LUKE01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKE]
1992073
1991991
-
Leu
TAG
[ENA]
¡û
>W1711124546
LUKF01000014
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKF]
155308
155226
-
Leu
TAG
[ENA]
¡û
>W1712010641
NELQ01000002
Bdellovibrionota
Bdellovibrio sp. SKB1291214 [NELQ]
2747719
2747637
-
Leu
TAG
[ENA]
¡û
>C001990
BX842601
Bdellovibrionota
Bdellovibrio bacteriovorus [BX842601]
632668
632586
-
Leu
TAG
[Ensembl]
¡û
>WENV181171379
OEIV010211289
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
191
109
-
Leu
TAG
[ENA]
¢þ
>C181047775
CP020946
Bdellovibrionota
Bdellovibrio bacteriovorus SSB218315 [CP020946]
3140411
3140493
+
Leu
TAG
-
¡û
>SRA1003257
SRR002326.346023
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
226
144
-
Leu
TAG
[SRA]
>C151003378
CP002190
Bdellovibrionota
Bdellovibrio bacteriovorus W [CP002190]
485189
485107
-
Leu
TAG
[Ensembl]
¡û
>C151031137
CP007656
Bdellovibrionota
Bdellovibrio bacteriovorus 109J [CP007656]
3643064
3642982
-
Leu
TAG
[Ensembl]
¡û
>C151087504
CP011926
Bdellovibrionota
Bdellovibrio bacteriovorus [CP011926]
621894
621812
-
Leu
TAG
-
¡û
>W1511399658
JTEV01000003
Bdellovibrionota
Bdellovibrio sp. ArHS [JTEV]
178450
178368
-
Leu
TAG
[ENA]
¡û
>C131001677
CP002930
Bdellovibrionota
Bdellovibrio bacteriovorus str. Tiberius [CP002930]
658717
658635
-
Leu
TAG
[Ensembl]
¡û
>W1610935415
LUKD01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKD]
2084810
2084728
-
Leu
TAG
[ENA]
¡û
>W1610935450
LUKE01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKE]
1992073
1991991
-
Leu
TAG
[ENA]
¡û
>W1610935486
LUKF01000014
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKF]
155308
155226
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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