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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147964 (84 seq.)
>W1710877094
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
70555
70631
+
Arg
ACG
[ENA]
¡û
>W1710877128
LMPV01000004
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
901
975
+
Arg
ACG
[ENA]
¡û
>W1710877133
LMPV01000005
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
708
781
+
Arg
ACG
[ENA]
¡û
>W1710909406
LNQL01000004
Bacillota
Exiguobacterium enclense [LNQL]
258455
258531
+
Arg
ACG
[ENA]
¡û
>W1711116968
LUCU01000004
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
926
1000
+
Arg
ACG
[ENA]
¡û
>W1711116973
LUCU01000005
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
488
415
-
Arg
ACG
[ENA]
¡û
>W1711117017
LUCU01000044
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
415
339
-
Arg
ACG
[ENA]
¡û
>W131241548
BARY01000002
Bacillota
Exiguobacterium sp. OS-77 [BARY]
261528
261604
+
Arg
ACG
[ENA]
¡û
>W1711603259
MOLV01000005
Bacillota
Exiguobacterium sp. KRL4 [MOLV]
209
133
-
Arg
ACG
[ENA]
¡û
>W1711603282
MOLV01000034
Bacillota
Exiguobacterium sp. KRL4 [MOLV]
283
209
-
Arg
ACG
[ENA]
¡û
>W1711603312
MOLV01000046
Bacillota
Exiguobacterium sp. KRL4 [MOLV]
391
317
-
Arg
ACG
[ENA]
¡û
>W1711632661
MPSZ01000004
Bacillota
Exiguobacterium indicum HHS 31 [MPSZ]
222082
222158
+
Arg
ACG
[ENA]
¡û
>W1711632689
MPSZ01000023
Bacillota
Exiguobacterium indicum HHS 31 [MPSZ]
180
106
-
Arg
ACG
[ENA]
¡û
>W1712017306
NESR01000017
Bacillota
Kurthia gibsonii [NESR]
214
138
-
Arg
ACG
[ENA]
¡û
>W1712017338
NESR01000042
Bacillota
Kurthia gibsonii [NESR]
245
171
-
Arg
ACG
[ENA]
¡û
>W1712017343
NESR01000043
Bacillota
Kurthia gibsonii [NESR]
385
312
-
Arg
ACG
[ENA]
¡û
>PL171001643
CP022237
Firmicutes
Exiguobacterium oxidotolerans N4-1P plasmid:unnamed1
128656
128730
+
Arg
ACG
[ENA]
¡û
>C171040525
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
462443
462517
+
Arg
ACG
-
¡û
>C171040534
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
514505
514578
+
Arg
ACG
-
¡û
>C171040578
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
178710
178634
-
Arg
ACG
-
¡û
>C171072100
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
35309
35383
+
Arg
ACG
-
¡û
>C171072109
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
87371
87444
+
Arg
ACG
-
¡û
>C171072115
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
92973
93046
+
Arg
ACG
-
¡û
>C171072156
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
3002518
3002442
-
Arg
ACG
-
¡û
>w003705
AADW02000048
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
398
474
+
Arg
ACG
[ENA]
¡û
>w003699
AADW02000036
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
14290
14366
+
Arg
ACG
[ENA]
¡û
>w003688
AADW02000030
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
19733
19657
-
Arg
ACG
[ENA]
¡û
>w003668
AADW02000015
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
2383
2461
+
Arg
ACG
[ENA]
¡û
>C08004779
CP001022
Bacillota
Exiguobacterium sibiricum 255-15 [CP001022]
35416
35490
+
Arg
ACG
[Ensembl]
¡û
>C08004788
CP001022
Bacillota
Exiguobacterium sibiricum 255-15 [CP001022]
87687
87761
+
Arg
ACG
[Ensembl]
¡û
>C08004828
CP001022
Bacillota
Exiguobacterium sibiricum 255-15 [CP001022]
2789469
2789396
-
Arg
ACG
[Ensembl]
¡û
>WENV170022762
BCQK01046195
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
261
187
-
Arg
ACG
[ENA]
¢þ
>W141484775
JFYW01000005
Bacillota
Exiguobacterium sp. RIT341 [JFYW]
552
626
+
Arg
ACG
[ENA]
¡û
>W141484778
JFYW01000006
Bacillota
Exiguobacterium sp. RIT341 [JFYW]
261
334
+
Arg
ACG
[ENA]
¡û
>W141484800
JFYW01000010
Bacillota
Exiguobacterium sp. RIT341 [JFYW]
242398
242474
+
Arg
ACG
[ENA]
¡û
>W141563052
JHZS01000001
Bacillota
Exiguobacterium sibiricum 7·î3Æü [JHZS]
256723
256799
+
Arg
ACG
[ENA]
¡û
>W141563162
JHZU01000002
Bacillota
Exiguobacterium undae 190-11 [JHZU]
255
181
-
Arg
ACG
[ENA]
¡û
>W141563175
JHZU01000004
Bacillota
Exiguobacterium undae 190-11 [JHZU]
268479
268555
+
Arg
ACG
[ENA]
¡û
>W141563223
JHZV01000002
Bacillota
Exiguobacterium undae DSM 14481 [JHZV]
266
192
-
Arg
ACG
[ENA]
¡û
>W141563233
JHZV01000003
Bacillota
Exiguobacterium undae DSM 14481 [JHZV]
285656
285732
+
Arg
ACG
[ENA]
¡û
>W141701499
JMKS01000003
Bacillota
Exiguobacterium antarcticum DSM 14480 [JMKS]
1440136
1440210
+
Arg
ACG
[ENA]
¡û
>W141701508
JMKS01000003
Bacillota
Exiguobacterium antarcticum DSM 14480 [JMKS]
1492437
1492511
+
Arg
ACG
[ENA]
¡û
>W141701528
JMKS01000003
Bacillota
Exiguobacterium antarcticum DSM 14480 [JMKS]
1154417
1154341
-
Arg
ACG
[ENA]
¡û
>W141730938
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
2754910
2754984
+
Arg
ACG
[ENA]
¡û
>W141730947
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
2807031
2807104
+
Arg
ACG
[ENA]
¡û
>W141730967
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
2477802
2477726
-
Arg
ACG
[ENA]
¡û
>W141730988
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
1601062
1601136
+
Arg
ACG
[ENA]
¡û
>W141730997
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
1653240
1653314
+
Arg
ACG
[ENA]
¡û
>W141731037
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
1311274
1311198
-
Arg
ACG
[ENA]
¡û
>C141009920
CP006866
Bacillota
Exiguobacterium sp. MH3 [CP006866]
51846
51919
+
Arg
ACG
[Ensembl]
¡û
>C141009965
CP006866
Bacillota
Exiguobacterium sp. MH3 [CP006866]
2884898
2884822
-
Arg
ACG
[Ensembl]
¡û
>W1911770678
QXJB01000003
Bacillota
Exiguobacterium sp. RIT452 [QXJB]
273156
273232
+
Arg
ACG
[ENA]
¡û
>W1911770707
QXJB01000021
Bacillota
Exiguobacterium sp. RIT452 [QXJB]
166
92
-
Arg
ACG
[ENA]
¡û
>W1911770712
QXJB01000022
Bacillota
Exiguobacterium sp. RIT452 [QXJB]
355
429
+
Arg
ACG
[ENA]
¡û
>W1810760542
QPKF01000002
Bacillota
Exiguobacterium sp. RIT594 [QPKF]
291
215
-
Arg
ACG
[ENA]
¡û
>W1810761001
QPKS01000023
Bacillota
Exiguobacterium flavidum HF60 [QPKS]
195
271
+
Arg
ACG
[ENA]
¡û
>W1511403800
JTLL01000008
Bacillota
Exiguobacterium sp. ZWU0009 [JTLL]
152627
152703
+
Arg
ACG
[ENA]
¡û
>W1511403820
JTLL01000036
Bacillota
Exiguobacterium sp. ZWU0009 [JTLL]
431
505
+
Arg
ACG
[ENA]
¡û
>W1511686104
LFQN01000039
Bacillota
Exiguobacterium acetylicum ZBG2 [LFQN]
8374
8450
+
Arg
ACG
[ENA]
¡û
>W1511686110
LFQN01000049
Bacillota
Exiguobacterium acetylicum ZBG2 [LFQN]
279
206
-
Arg
ACG
[ENA]
¡û
>W1511686123
LFQN01000053
Bacillota
Exiguobacterium acetylicum ZBG2 [LFQN]
818
892
+
Arg
ACG
[ENA]
¡û
>W1511699960
LGIW01000003
Bacillota
Exiguobacterium sp. BMC-KP [LGIW]
515
591
+
Arg
ACG
[ENA]
¡û
>W1511699970
LGIW01000010
Bacillota
Exiguobacterium sp. BMC-KP [LGIW]
473
546
+
Arg
ACG
[ENA]
¡û
>C131001795
CP003063
Bacillota
Exiguobacterium antarcticum B7 Eab7 [CP003063]
35329
35403
+
Arg
ACG
[Ensembl]
¡û
>C131001804
CP003063
Bacillota
Exiguobacterium antarcticum B7 Eab7 [CP003063]
87620
87694
+
Arg
ACG
[Ensembl]
¡û
>C131001841
CP003063
Bacillota
Exiguobacterium antarcticum B7 Eab7 [CP003063]
2579268
2579192
-
Arg
ACG
[Ensembl]
¡û
>W1610589618
LDQV01000030
Bacillota
Exiguobacterium indicum [LDQV]
410
334
-
Arg
ACG
[ENA]
¡û
>W1610589648
LDQV01000053
Bacillota
Exiguobacterium indicum [LDQV]
199
125
-
Arg
ACG
[ENA]
¡û
>W1610589695
LDQW01000050
Bacillota
Exiguobacterium indicum [LDQW]
18341
18417
+
Arg
ACG
[ENA]
¡û
>W1610589707
LDQW01000085
Bacillota
Exiguobacterium indicum [LDQW]
819
893
+
Arg
ACG
[ENA]
¡û
>W1610589712
LDQW01000108
Bacillota
Exiguobacterium indicum [LDQW]
277
204
-
Arg
ACG
[ENA]
¡û
>W1610739440
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
70555
70631
+
Arg
ACG
[ENA]
¡û
>W1610739474
LMPV01000004
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
901
975
+
Arg
ACG
[ENA]
¡û
>W1610739479
LMPV01000005
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
708
781
+
Arg
ACG
[ENA]
¡û
>W1610767765
LNQL01000004
Bacillota
Exiguobacterium enclense [LNQL]
258455
258531
+
Arg
ACG
[ENA]
¡û
>W1610928327
LUCU01000004
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
926
1000
+
Arg
ACG
[ENA]
¡û
>W1610928332
LUCU01000005
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
488
415
-
Arg
ACG
[ENA]
¡û
>W1610928376
LUCU01000044
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
415
339
-
Arg
ACG
[ENA]
¡û
>W1710511241
FMYN01000004
Bacillota
Exiguobacterium enclense [FMYN]
258455
258531
+
Arg
ACG
[ENA]
¡û
>W1710708898
LDQV01000030
Bacillota
Exiguobacterium indicum [LDQV]
410
334
-
Arg
ACG
[ENA]
¡û
>W1710708928
LDQV01000053
Bacillota
Exiguobacterium indicum [LDQV]
199
125
-
Arg
ACG
[ENA]
¡û
>W1710708975
LDQW01000050
Bacillota
Exiguobacterium indicum [LDQW]
18341
18417
+
Arg
ACG
[ENA]
¡û
>W1710708987
LDQW01000085
Bacillota
Exiguobacterium indicum [LDQW]
819
893
+
Arg
ACG
[ENA]
¡û
>W1710708992
LDQW01000108
Bacillota
Exiguobacterium indicum [LDQW]
277
204
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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