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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148044 (100 seq.)
>W1710897093
LNHS01000071
Gammaproteobacteria
Providencia stuartii [LNHS]
84634
84710
+
Val
GAC
[ENA]
¡û
>W1710897094
LNHS01000071
Gammaproteobacteria
Providencia stuartii [LNHS]
84738
84814
+
Val
GAC
[ENA]
¡û
>W1710897095
LNHS01000071
Gammaproteobacteria
Providencia stuartii [LNHS]
84841
84917
+
Val
GAC
[ENA]
¡û
>W1711684363
MSAA01000005
Gammaproteobacteria
Providencia stuartii [MSAA]
136922
136846
-
Val
GAC
[ENA]
¡û
>W1711684364
MSAA01000005
Gammaproteobacteria
Providencia stuartii [MSAA]
136818
136742
-
Val
GAC
[ENA]
¡û
>W1711684365
MSAA01000005
Gammaproteobacteria
Providencia stuartii [MSAA]
136715
136639
-
Val
GAC
[ENA]
¡û
>C171045429
CP016044
Gammaproteobacteria
Edwardsiella piscicida S11-285 [CP016044]
1691547
1691471
-
Val
GAC
-
¡û
>C171045430
CP016044
Gammaproteobacteria
Edwardsiella piscicida S11-285 [CP016044]
1691450
1691374
-
Val
GAC
-
¡û
>C171045431
CP016044
Gammaproteobacteria
Edwardsiella piscicida S11-285 [CP016044]
1691353
1691277
-
Val
GAC
-
¡û
>WENV180358516
OBNP01083407
[OBNP] marine metagenome; seawater
169
93
-
Val
GAC
[ENA]
¢þ
>WENV180635346
OCRD01012464
[OCRD] marine metagenome; seawater
274
198
-
Val
GAC
[ENA]
¢þ
>W08006493
ABJD02000101
Gammaproteobacteria
Providencia stuartii ATCC 25827 [ABJD]
804995
804922
-
Val
GAC
[ENA]
¡û
>W08006494
ABJD02000101
Gammaproteobacteria
Providencia stuartii ATCC 25827 [ABJD]
804891
804818
-
Val
GAC
[ENA]
¡û
>W141221470
AZYZ01000021
Gammaproteobacteria
Providencia alcalifaciens PAL-3 [AZYZ]
40
116
+
Val
GAC
[ENA]
¡û
>W141221486
AZYZ01000037
Gammaproteobacteria
Providencia alcalifaciens PAL-3 [AZYZ]
45562
45638
+
Val
GAC
[ENA]
¡û
>W141223813
BAEN01000035
Gammaproteobacteria
Aliiglaciecola lipolytica E3 [BAEN]
22246
22322
+
Val
GAC
[ENA]
¡û
>WENV182621528
OJKJ01000057
[OJKJ] metagenome; faeces
84024
83948
-
Val
GAC
[ENA]
¢þ
>WENV182621529
OJKJ01000057
[OJKJ] metagenome; faeces
83917
83841
-
Val
GAC
[ENA]
¢þ
>WENV182621530
OJKJ01000057
[OJKJ] metagenome; faeces
83810
83734
-
Val
GAC
[ENA]
¢þ
>WENV170016120
AZIJ01013058
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
133
209
+
Val
GAC
[ENA]
¢þ
>WENV170016185
AZIJ01015039
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
626
702
+
Val
GAC
[ENA]
¢þ
>WENV170655801
JTFN01075460
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
1780
1704
-
Val
GAC
[ENA]
¢þ
>WENV170656122
JTFO01000426
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
3330
3254
-
Val
GAC
[ENA]
¢þ
>WENV170700251
LIDZ01009451
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
171208
171284
+
Val
GAC
[ENA]
¢þ
>W09112493
ABXW01000053
Gammaproteobacteria
Providencia alcalifaciens DSM 30120 [ABXW]
325584
325660
+
Val
GAC
[ENA]
¡û
>W09112494
ABXW01000053
Gammaproteobacteria
Providencia alcalifaciens DSM 30120 [ABXW]
325702
325778
+
Val
GAC
[ENA]
¡û
>W09117728
ACCI01000260
Gammaproteobacteria
Providencia rettgeri DSM 1131 [ACCI]
107
31
-
Val
GAC
[ENA]
¡û
>C181151985
CP027398
Gammaproteobacteria
Providencia stuartii FDAARGOS_291 [CP027398]
2391514
2391590
+
Val
GAC
-
¡û
>C181151986
CP027398
Gammaproteobacteria
Providencia stuartii FDAARGOS_291 [CP027398]
2391618
2391694
+
Val
GAC
-
¡û
>C181151987
CP027398
Gammaproteobacteria
Providencia stuartii FDAARGOS_291 [CP027398]
2391721
2391797
+
Val
GAC
-
¡û
>C181152651
CP027418
Gammaproteobacteria
Providencia rettgeri FDAARGOS_330 [CP027418]
3319619
3319543
-
Val
GAC
-
¡û
>C181152652
CP027418
Gammaproteobacteria
Providencia rettgeri FDAARGOS_330 [CP027418]
3319510
3319434
-
Val
GAC
-
¡û
>C181152653
CP027418
Gammaproteobacteria
Providencia rettgeri FDAARGOS_330 [CP027418]
3319401
3319325
-
Val
GAC
-
¡û
>C181168582
CP028813
Gammaproteobacteria
Edwardsiella ictaluri MS-17-156 [CP028813]
3834307
3834383
+
Val
GAC
-
¡û
>C181168583
CP028813
Gammaproteobacteria
Edwardsiella ictaluri MS-17-156 [CP028813]
3834404
3834480
+
Val
GAC
-
¡û
>C181168584
CP028813
Gammaproteobacteria
Edwardsiella ictaluri MS-17-156 [CP028813]
3834501
3834577
+
Val
GAC
-
¡û
>C191100101
CP033076
Gammaproteobacteria
Buttiauxella sp. 3AFRM03 [CP033076]
614501
614577
+
Val
GAC
-
¡û
>C191100102
CP033076
Gammaproteobacteria
Buttiauxella sp. 3AFRM03 [CP033076]
614620
614696
+
Val
GAC
-
¡û
>C191155831
CP037950
Gammaproteobacteria
Erwinia sp. QL-Z3 [CP037950]
3473532
3473456
-
Val
GAC
-
¡û
>W141710367
JMPI01000030
Gammaproteobacteria
Buttiauxella agrestis ATCC 33320 [JMPI]
68837
68913
+
Val
GAC
[ENA]
¡û
>W141804749
JPIN01000001
Gammaproteobacteria
Pseudidiomarina atlantica MCCC 1A10513 [JPIN]
386896
386972
+
Val
GAC
[ENA]
¡û
>W1910179095
BJFN01000001
Gammaproteobacteria
Buttiauxella sp. A111 [BJFN]
332253
332329
+
Val
GAC
[ENA]
¡û
>W1910563485
JACQ01000032
Gammaproteobacteria
Edwardsiella tarda PPD130/91 [JACQ]
83830
83754
-
Val
GAC
[ENA]
¡û
>W1910563486
JACQ01000032
Gammaproteobacteria
Edwardsiella tarda PPD130/91 [JACQ]
83733
83657
-
Val
GAC
[ENA]
¡û
>W1910563487
JACQ01000032
Gammaproteobacteria
Edwardsiella tarda PPD130/91 [JACQ]
83636
83560
-
Val
GAC
[ENA]
¡û
>W1911568596
PCQJ01000001
Gammaproteobacteria
Erwinia billingiae MYb121 [PCQJ]
441782
441858
+
Val
GAC
[ENA]
¡û
>W1911572932
PDDV01000013
Gammaproteobacteria
Edwardsiella tarda FDAARGOS_370 [PDDV]
2437978
2438054
+
Val
GAC
[ENA]
¡û
>W1911584916
PIPM01000024
Gammaproteobacteria
Aliidiomarina sanyensis GYP-17 [PIPM]
6661
6737
+
Val
GAC
[ENA]
¡û
>W1911585166
PIPR01000001
Gammaproteobacteria
Pseudidiomarina aestuarii KYW314 [PIPR]
377092
377016
-
Val
GAC
[ENA]
¡û
>W1911585318
PIPU01000008
Gammaproteobacteria
Pseudidiomarina donghaiensis 908033 [PIPU]
42001
42077
+
Val
GAC
[ENA]
¡û
>W1911585556
PIPZ01000001
Gammaproteobacteria
Pseudidiomarina marina PIM1 [PIPZ]
409362
409286
-
Val
GAC
[ENA]
¡û
>W1911585985
PIQJ01000001
Gammaproteobacteria
Pseudidiomarina tainanensis PIN1 [PIQJ]
1357758
1357834
+
Val
GAC
[ENA]
¡û
>W1911824440
QZWH01000001
Gammaproteobacteria
Buttiauxella izardii CCUG 35510 [QZWH]
39069
38993
-
Val
GAC
[ENA]
¡û
>W1810425698
PYVF01000011
Gammaproteobacteria
Pseudidiomarina aestuarii A12-4 [PYVF]
4283
4359
+
Val
GAC
[ENA]
¡û
>W1810425719
PYVG01000013
Gammaproteobacteria
Pseudidiomarina aestuarii A9-4 [PYVG]
16483
16559
+
Val
GAC
[ENA]
¡û
>W1810425789
PYVM01000001
Gammaproteobacteria
Pseudidiomarina aestuarii Z-D7-3 [PYVM]
23415
23491
+
Val
GAC
[ENA]
¡û
>W1810609121
QGTT01000024
Gammaproteobacteria
Pseudidiomarina maritima 125B1 [QGTT]
22286
22362
+
Val
GAC
[ENA]
¡û
>W1810721876
QNSG01000024
Gammaproteobacteria
Pseudidiomarina tainanensis 125Bg [QNSG]
22286
22362
+
Val
GAC
[ENA]
¡û
>W1810758930
QPJA01000023
Gammaproteobacteria
Pseudidiomarina tainanensis 86_o [QPJA]
22285
22361
+
Val
GAC
[ENA]
¡û
>W10113642
ADGK01000109
Gammaproteobacteria
Edwardsiella tarda ATCC 23685 [ADGK]
5697
5621
-
Val
GAC
[ENA]
¡û
>W10113643
ADGK01000109
Gammaproteobacteria
Edwardsiella tarda ATCC 23685 [ADGK]
5599
5523
-
Val
GAC
[ENA]
¡û
>W10113644
ADGK01000110
Gammaproteobacteria
Edwardsiella tarda ATCC 23685 [ADGK]
235
159
-
Val
GAC
[ENA]
¡û
>W10113645
ADGK01000110
Gammaproteobacteria
Edwardsiella tarda ATCC 23685 [ADGK]
137
61
-
Val
GAC
[ENA]
¡û
>C11109139
CP002209
Gammaproteobacteria
Ferrimonas balearica DSM 9799 [CP002209]
2058270
2058194
-
Val
GAC
[Ensembl]
¡û
>W1510741084
CYHB01000001
Gammaproteobacteria
Pseudidiomarina woesei DSM 27808 [CYHB]
53123
53047
-
Val
GAC
[ENA]
¡û
>W11116978
ADGK01000109
Gammaproteobacteria
Edwardsiella tarda ATCC 23685 [ADGK]
5697
5621
-
Val
GAC
[ENA]
¡û
>W11116979
ADGK01000109
Gammaproteobacteria
Edwardsiella tarda ATCC 23685 [ADGK]
5599
5523
-
Val
GAC
[ENA]
¡û
>W11116980
ADGK01000110
Gammaproteobacteria
Edwardsiella tarda ATCC 23685 [ADGK]
235
159
-
Val
GAC
[ENA]
¡û
>W11116981
ADGK01000110
Gammaproteobacteria
Edwardsiella tarda ATCC 23685 [ADGK]
137
61
-
Val
GAC
[ENA]
¡û
>W1511345735
JRGQ01000091
Gammaproteobacteria
Edwardsiella tarda ET883 [JRGQ]
10089
10013
-
Val
GAC
[ENA]
¡û
>W1511393868
JTAU01000001
Gammaproteobacteria
Providencia stuartii FDAARGOS_87 [JTAU]
32175
32099
-
Val
GAC
[ENA]
¡û
>W1511638710
LDOF01000034
Gammaproteobacteria
Moellerella wisconsensis GTA-1455 [LDOF]
51888
51812
-
Val
GAC
[ENA]
¡û
>W1511638711
LDOF01000034
Gammaproteobacteria
Moellerella wisconsensis GTA-1455 [LDOF]
51769
51693
-
Val
GAC
[ENA]
¡û
>C121013415
CP003488
Gammaproteobacteria
Providencia stuartii MRSN 2154 [CP003488]
4083264
4083188
-
Val
GAC
[Ensembl]
¡û
>C121013416
CP003488
Gammaproteobacteria
Providencia stuartii MRSN 2154 [CP003488]
4083161
4083085
-
Val
GAC
[Ensembl]
¡û
>C121016325
FP236843
Gammaproteobacteria
Erwinia billingiae Eb661 [FP236843]
2162621
2162545
-
Val
GAC
[Ensembl]
¡û
>W1610041915
BAXG01000007
Gammaproteobacteria
Photobacterium sp. JCM 19050 [BAXG]
90549
90473
-
Val
GAC
[ENA]
¡û
>W1610041922
BAXG01000014
Gammaproteobacteria
Photobacterium sp. JCM 19050 [BAXG]
85202
85278
+
Val
GAC
[ENA]
¡û
>W1610419509
FIZD01000008
Gammaproteobacteria
Providencia heimbachae [FIZD]
590929
590853
-
Val
GAC
[ENA]
¡û
>W1610419510
FIZD01000008
Gammaproteobacteria
Providencia heimbachae [FIZD]
590795
590719
-
Val
GAC
[ENA]
¡û
>W1610419511
FIZD01000008
Gammaproteobacteria
Providencia heimbachae [FIZD]
590637
590561
-
Val
GAC
[ENA]
¡û
>W1610632477
LIPW01000001
Gammaproteobacteria
Pseudidiomarina woesei [LIPW]
53123
53047
-
Val
GAC
[ENA]
¡û
>W1610757497
LNHS01000071
Gammaproteobacteria
Providencia stuartii [LNHS]
84634
84710
+
Val
GAC
[ENA]
¡û
>W1610757498
LNHS01000071
Gammaproteobacteria
Providencia stuartii [LNHS]
84738
84814
+
Val
GAC
[ENA]
¡û
>W1610757499
LNHS01000071
Gammaproteobacteria
Providencia stuartii [LNHS]
84841
84917
+
Val
GAC
[ENA]
¡û
>W1610994366
LXEP01000003
Gammaproteobacteria
Buttiauxella gaviniae ATCC 51604 [LXEP]
220267
220343
+
Val
GAC
[ENA]
¡û
>W1610994488
LXEQ01000047
Gammaproteobacteria
Buttiauxella ferragutiae ATCC 51602 [LXEQ]
119511
119435
-
Val
GAC
[ENA]
¡û
>W1610994489
LXEQ01000047
Gammaproteobacteria
Buttiauxella ferragutiae ATCC 51602 [LXEQ]
119392
119316
-
Val
GAC
[ENA]
¡û
>W1610994524
LXER01000017
Gammaproteobacteria
Buttiauxella brennerae ATCC 51605 [LXER]
181388
181464
+
Val
GAC
[ENA]
¡û
>W1610994525
LXER01000017
Gammaproteobacteria
Buttiauxella brennerae ATCC 51605 [LXER]
181507
181583
+
Val
GAC
[ENA]
¡û
>W1710039009
BAXG01000007
Gammaproteobacteria
Photobacterium sp. JCM 19050 [BAXG]
90549
90473
-
Val
GAC
[ENA]
¡û
>W1710039016
BAXG01000014
Gammaproteobacteria
Photobacterium sp. JCM 19050 [BAXG]
85202
85278
+
Val
GAC
[ENA]
¡û
>W1710419245
FIZD01000008
Gammaproteobacteria
Providencia heimbachae [FIZD]
590929
590853
-
Val
GAC
[ENA]
¡û
>W1710419246
FIZD01000008
Gammaproteobacteria
Providencia heimbachae [FIZD]
590795
590719
-
Val
GAC
[ENA]
¡û
>W1710419247
FIZD01000008
Gammaproteobacteria
Providencia heimbachae [FIZD]
590637
590561
-
Val
GAC
[ENA]
¡û
>W1710509854
FMXN01000001
Gammaproteobacteria
Pseudidiomarina indica [FMXN]
26883
26807
-
Val
GAC
[ENA]
¡û
>W1710575024
FOYU01000001
Gammaproteobacteria
Pseudidiomarina maritima [FOYU]
388608
388532
-
Val
GAC
[ENA]
¡û
>W1710579282
FPCF01000009
Gammaproteobacteria
Pseudidiomarina donghaiensis [FPCF]
42205
42281
+
Val
GAC
[ENA]
¡û
>W1710754841
LHXI01000010
Gammaproteobacteria
Erwinia billingiae [LHXI]
204235
204311
+
Val
GAC
[ENA]
¡û
>W1710766863
LIPW01000001
Gammaproteobacteria
Pseudidiomarina woesei [LIPW]
53123
53047
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK