This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148240 (64 seq.)
>W1710853364
LLWP01000001
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
506416
506342
-
Arg
ACG
[ENA]
¡û
>W1710870429
LMKM01000033
Bacteroidota
Pedobacter sp. Leaf216 [LMKM]
247988
247914
-
Arg
ACG
[ENA]
¡û
>W1710871285
LMLE01000011
Bacteroidota
Pedobacter sp. Leaf41 [LMLE]
168545
168619
+
Arg
ACG
[ENA]
¡û
>W1710876325
LMPD01000001
Bacteroidota
Pedobacter sp. Leaf176 [LMPD]
1081618
1081694
+
Arg
ACG
[ENA]
¡û
>W1710877046
LMPU01000001
Bacteroidota
Pedobacter sp. Leaf194 [LMPU]
1252400
1252476
+
Arg
ACG
[ENA]
¡û
>W1710888308
LMZQ01000005
Bacteroidota
Pedobacter ginsenosidimutans [LMZQ]
85720
85644
-
Arg
ACG
[ENA]
¡û
>W1712082049
NHOT01000002
Bacteroidota
Pedobacter sp. AJM [NHOT]
278256
278180
-
Arg
ACG
[ENA]
¡û
>C171057626
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
2231698
2231774
+
Arg
ACG
-
¡û
>C171117353
CP021237
Bacteroidota
Sphingobacteriaceae bacterium GW460-11-11-14-LB5 [CP021237]
3967631
3967557
-
Arg
ACG
-
¡û
>W131145895
AQGK01000001
Bacteroidota
Pedobacter heparinus DSM 2366 [AQGK]
2694610
2694534
-
Arg
ACG
[ENA]
¡û
>w027798
ABCM01000010
Bacteroidota
Pedobacter sp. BAL39 [ABCM]
56130
56052
-
Arg
ACG
[ENA]
¡û
>W141142849
AWRU01000005
Bacteroidota
Pedobacter sp. V48 [AWRU]
292886
292962
+
Arg
ACG
[ENA]
¡û
>W141187613
AYMG01000028
Bacteroidota
Pedobacter jeongneungensis H1ai [AYMG]
261131
261057
-
Arg
ACG
[ENA]
¡û
>W141292024
JAUG01000034
Bacteroidota
Pedobacter borealis DSM 19626 [JAUG]
11568
11494
-
Arg
ACG
[ENA]
¡û
>W141350106
JCKI01000003
Bacteroidota
Pedobacter sp. R20-19 [JCKI]
33060
32986
-
Arg
ACG
[ENA]
¡û
>WENV171003190
NNBT01002252
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
11251
11177
-
Arg
ACG
[ENA]
¢þ
>C181094377
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
3358699
3358625
-
Arg
ACG
-
¡û
>C191226469
LS999839
Bacteroidota
Pedobacter schmidteae eg [LS999839]
2493940
2493866
-
Arg
ACG
-
¡û
>W141727631
JNFF01000035
Bacteroidota
Pedobacter antarcticus 4BY [JNFF]
33625
33549
-
Arg
ACG
[ENA]
¡û
>W09109587
ABUJ01000002
Bacteroidota
Pedobacter heparinus DSM 2366 [ABUJ]
188371
188447
+
Arg
ACG
[ENA]
¡û
>C09108561
CP001681
Bacteroidota
Pedobacter heparinus DSM 2366 [CP001681]
4066059
4065983
-
Arg
ACG
[Ensembl]
¡û
>W1911647377
QAJL01000001
Bacteroidota
Pedobacter sp. KBW06 [QAJL]
2416020
2415946
-
Arg
ACG
[ENA]
¡û
>W1911647627
QAJQ01000001
Bacteroidota
Pedobacter sp. KBW01 [QAJQ]
214390
214464
+
Arg
ACG
[ENA]
¡û
>W1911747187
QWDC01000001
Bacteroidota
Mucilaginibacter conchicola MYSH2 [QWDC]
1619795
1619721
-
Arg
ACG
[ENA]
¡û
>W1810474667
QAIL01000493
Bacteroidota
Pedobacter sp. HMWF019 [QAIL]
1059
985
-
Arg
ACG
[ENA]
¡û
>W1810503856
QBKL01000012
Bacteroidota
Pedobacter sp. OK291 [QBKL]
765322
765396
+
Arg
ACG
[ENA]
¡û
>W1810503889
QBKM01000001
Bacteroidota
Pedobacter sp. YR016 [QBKM]
189138
189212
+
Arg
ACG
[ENA]
¡û
>W1810606125
QGNY01000006
Bacteroidota
Pedobacter paludis R-8 [QGNY]
55941
56015
+
Arg
ACG
[ENA]
¡û
>W1810606167
QGNZ01000003
Bacteroidota
Pedobacter yonginense KCTC22721 [QGNZ]
222849
222775
-
Arg
ACG
[ENA]
¡û
>W1810693893
QLLR01000016
Bacteroidota
Pedobacter cryoconitis DSM 14825 [QLLR]
60648
60574
-
Arg
ACG
[ENA]
¡û
>W1810720090
QNQU01000022
Bacteroidota
Pedobacter miscanthi RS10 [QNQU]
45660
45734
+
Arg
ACG
[ENA]
¡û
>W1810761067
QPKV01000004
Bacteroidota
Pedobacter chinensis JDX94 [QPKV]
121479
121553
+
Arg
ACG
[ENA]
¡û
>W1810885491
QUNJ01000003
Bacteroidota
Pedobacter sp. YR510 [QUNJ]
1277861
1277935
+
Arg
ACG
[ENA]
¡û
>W1810885607
QUNL01000015
Bacteroidota
Pedobacter sp. OV280 [QUNL]
138170
138096
-
Arg
ACG
[ENA]
¡û
>C10111801
CP001769
Bacteroidota
Spirosoma linguale DSM 74 [CP001769]
790194
790120
-
Arg
ACG
[Ensembl]
¡û
>W1511390986
JSYN01000037
Bacteroidota
Pedobacter kyungheensis KACC 16221 [JSYN]
22877
22801
-
Arg
ACG
[ENA]
¡û
>W1511509439
JXRA01000110
Bacteroidota
Pedobacter lusitanus NL19 [JXRA]
27015
27089
+
Arg
ACG
[ENA]
¡û
>W1511646566
LECU01000004
Bacteroidota
Pedobacter sp. BMA [LECU]
203792
203718
-
Arg
ACG
[ENA]
¡û
>C161049130
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
1056448
1056524
+
Arg
ACG
[Ensembl]
¡û
>C161049131
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
1056613
1056689
+
Arg
ACG
[Ensembl]
¡û
>C161073028
CP014504
Bacteroidota
Pedobacter cryoconitis PAMC 27485 [CP014504]
5881050
5881126
+
Arg
ACG
[Ensembl]
¡û
>W121063687
AJLG01000293
Bacteroidota
Pedobacter agri PB92 [AJLG]
462
386
-
Arg
ACG
[ENA]
¡û
>W1610612094
LGEK01000114
Bacteroidota
Mucilaginibacter sp. L294 [LGEK]
10932
11006
+
Arg
ACG
[ENA]
¡û
>W1610612120
LGEL01000020
Bacteroidota
Pedobacter panaciterrae [LGEL]
92689
92615
-
Arg
ACG
[ENA]
¡û
>W1610716488
LLWP01000001
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
506416
506342
-
Arg
ACG
[ENA]
¡û
>W1610732775
LMKM01000033
Bacteroidota
Pedobacter sp. Leaf216 [LMKM]
247988
247914
-
Arg
ACG
[ENA]
¡û
>W1610733631
LMLE01000011
Bacteroidota
Pedobacter sp. Leaf41 [LMLE]
168545
168619
+
Arg
ACG
[ENA]
¡û
>W1610738671
LMPD01000001
Bacteroidota
Pedobacter sp. Leaf176 [LMPD]
1081618
1081694
+
Arg
ACG
[ENA]
¡û
>W1610739392
LMPU01000001
Bacteroidota
Pedobacter sp. Leaf194 [LMPU]
1252400
1252476
+
Arg
ACG
[ENA]
¡û
>W1610748686
LMZQ01000005
Bacteroidota
Pedobacter ginsenosidimutans [LMZQ]
85720
85644
-
Arg
ACG
[ENA]
¡û
>W1710512276
FMZH01000002
Bacteroidota
Pedobacter soli [FMZH]
718398
718472
+
Arg
ACG
[ENA]
¡û
>W1710516047
FNCH01000005
Bacteroidota
Pedobacter terrae [FNCH]
114507
114433
-
Arg
ACG
[ENA]
¡û
>W1710519698
FNEX01000023
Bacteroidota
Pedobacter sp. ok626 [FNEX]
81849
81923
+
Arg
ACG
[ENA]
¡û
>W1710522101
FNGY01000011
Bacteroidota
Pedobacter steynii [FNGY]
86278
86204
-
Arg
ACG
[ENA]
¡û
>W1710522175
FNGZ01000017
Bacteroidota
Pedobacter antarcticus [FNGZ]
3807
3883
+
Arg
ACG
[ENA]
¡û
>W1710533299
FNRA01000005
Bacteroidota
Pedobacter hartonius [FNRA]
345053
345129
+
Arg
ACG
[ENA]
¡û
>W1710551668
FOGG01000008
Bacteroidota
Pedobacter rhizosphaerae [FOGG]
126427
126503
+
Arg
ACG
[ENA]
¡û
>W1710555471
FOJM01000011
Bacteroidota
Pedobacter suwonensis [FOJM]
157128
157054
-
Arg
ACG
[ENA]
¡û
>W1710560885
FONS01000011
Bacteroidota
Pedobacter antarcticus [FONS]
87873
87949
+
Arg
ACG
[ENA]
¡û
>W1710563342
FOPP01000003
Bacteroidota
Pedobacter insulae [FOPP]
351116
351042
-
Arg
ACG
[ENA]
¡û
>W1710583230
FQUQ01000002
Bacteroidota
Pedobacter caeni [FQUQ]
227714
227788
+
Arg
ACG
[ENA]
¡û
>W1710606784
FWYB01000005
Bacteroidota
Pedobacter nyackensis [FWYB]
264927
265001
+
Arg
ACG
[ENA]
¡û
>W1710733600
LGEK01000114
Bacteroidota
Mucilaginibacter sp. L294 [LGEK]
10932
11006
+
Arg
ACG
[ENA]
¡û
>W1710733626
LGEL01000020
Bacteroidota
Pedobacter panaciterrae [LGEL]
92689
92615
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK