This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148282 (72 seq.)
>W1710878077
LMQQ01000002
Betaproteobacteria
Methylophilus sp. Leaf414 [LMQQ]
298062
298138
+
Pro
TGG
[ENA]
¡û
>W1710878168
LMQS01000004
Betaproteobacteria
Methylophilus sp. Leaf416 [LMQS]
232946
232870
-
Pro
TGG
[ENA]
¡û
>W1710878393
LMQX01000005
Betaproteobacteria
Methylophilus sp. Leaf459 [LMQX]
50343
50267
-
Pro
TGG
[ENA]
¡û
>W1710893298
LNEP01000005
Betaproteobacteria
Betaproteobacteria bacterium Ga0077540 [LNEP]
42817
42741
-
Pro
TGG
[ENA]
¡û
>W1711224662
LXUF01000011
Betaproteobacteria
Methylovorus sp. MM2 MM1 [LXUF]
551325
551249
-
Pro
TGG
[ENA]
¡û
>W131164720
ARBA01000001
Betaproteobacteria
Methylotenera mobilis 13 [ARBA]
100983
100907
-
Pro
TGG
[ENA]
¡û
>W131164748
ARBA01000003
Betaproteobacteria
Methylotenera mobilis 13 [ARBA]
660413
660337
-
Pro
TGG
[ENA]
¡û
>W131186205
ARVX01000001
Betaproteobacteria
Methylotenera versatilis 79 [ARVX]
674636
674560
-
Pro
TGG
[ENA]
¡û
>W131186567
ARWF01000001
Betaproteobacteria
Methylotenera sp. 73s [ARWF]
1554106
1554030
-
Pro
TGG
[ENA]
¡û
>W131163864
ARAC01000001
Betaproteobacteria
Methylophilus sp. 42 [ARAC]
363487
363563
+
Pro
TGG
[ENA]
¡û
>W131170264
ARFK01000003
Betaproteobacteria
Methylophilus sp. 1 [ARFK]
1339544
1339620
+
Pro
TGG
[ENA]
¡û
>W131176226
ARJW01000012
Betaproteobacteria
Methylophilus methylotrophus DSM 46235 = ATCC 53528 [ARJW]
280378
280302
-
Pro
TGG
[ENA]
¡û
>W131186394
ARWC01000001
Betaproteobacteria
Methylotenera sp. 1P/1 [ARWC]
2049183
2049259
+
Pro
TGG
[ENA]
¡û
>WENV180099060
MTBK01284931
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1223
1299
+
Pro
TGG
[ENA]
¢þ
>WENV180175877
OAWC01002248
[OAWC] human gut metagenome; faeces
1800
1876
+
Pro
TGG
[ENA]
¢þ
>WENV180357919
OBNO01018428
[OBNO] marine metagenome; ENVO 00002150
260
184
-
Pro
TGG
[ENA]
¢þ
>WENV180589914
OCOS01038694
[OCOS] marine metagenome; Sterile flask
214
138
-
Pro
TGG
[ENA]
¢þ
>WENV181189049
OEOF01000037
[OEOF] activated sludge metagenome; Activated Sludge
13228
13304
+
Pro
TGG
[ENA]
¢þ
>WENV181222619
OFDC01000032
[OFDC] hot springs metagenome; Water
185704
185628
-
Pro
TGG
[ENA]
¢þ
>WENV181222677
OFDC01000075
[OFDC] hot springs metagenome; Water
52041
51965
-
Pro
TGG
[ENA]
¢þ
>WENV181379712
OFRD01006614
[OFRD] wastewater metagenome; Exp Tend CN 100WW
337
261
-
Pro
TGG
[ENA]
¢þ
>WENV181399596
OFSE01047227
[OFSE] wastewater metagenome; Exp Tend VB 50WW
218
142
-
Pro
TGG
[ENA]
¢þ
>W141220045
AZXN01000001
Betaproteobacteria
Methylophilus sp. 5 [AZXN]
1439556
1439632
+
Pro
TGG
[ENA]
¡û
>W141231910
BAUS01000004
Betaproteobacteria
Methylophilus sp. OH31 [BAUS]
319847
319923
+
Pro
TGG
[ENA]
¡û
>W141350135
JCKJ01000001
Betaproteobacteria
Methylophilaceae bacterium 11 [JCKJ]
120100
120176
+
Pro
TGG
[ENA]
¡û
>WENV170558762
CXWL01088777
[CXWL] groundwater metagenome; biofilm material
1698
1774
+
Pro
TGG
[ENA]
¢þ
>WENV170577504
FSSH01000094
[FSSH] freshwater metagenome; drinking water
10629
10705
+
Pro
TGG
[ENA]
¢þ
>WENV170705460
LNAO01000611
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1576
1500
-
Pro
TGG
[ENA]
¢þ
>WENV170705833
LNAP01000436
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
48368
48292
-
Pro
TGG
[ENA]
¢þ
>WENV170707068
LNAP01012147
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
4205
4129
-
Pro
TGG
[ENA]
¢þ
>WENV170708647
LNAP01100863
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
31
107
+
Pro
TGG
[ENA]
¢þ
>WENV170710438
LNFM01001749
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
10804
10880
+
Pro
TGG
[ENA]
¢þ
>WENV170710976
LNFM01003165
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
32981
32905
-
Pro
TGG
[ENA]
¢þ
>WENV170823252
MDSY01054097
[MDSY] marine metagenome; seawater
6922
6846
-
Pro
TGG
[ENA]
¢þ
>WENV170825095
MDSY01087421
[MDSY] marine metagenome; seawater
5
81
+
Pro
TGG
[ENA]
¢þ
>WENV170961526
MLJW01000110
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
84457
84533
+
Pro
TGG
[ENA]
¢þ
>WENV170961610
MLJW01000232
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
30930
30854
-
Pro
TGG
[ENA]
¢þ
>W141819346
JQMG01000001
Betaproteobacteria
Methylotenera sp. L2L1 [JQMG]
955862
955938
+
Pro
TGG
[ENA]
¡û
>W141819351
JQMG01000001
Betaproteobacteria
Methylotenera sp. L2L1 [JQMG]
1091141
1091217
+
Pro
TGG
[ENA]
¡û
>W1910730041
MHBU01000029
Betaproteobacteria
Methylotenera sp. RIFCSPLOWO2_02_FULL_45_14 [MHBU]
22515
22591
+
Pro
TGG
[ENA]
¡û
>C09107776
CP001672
Betaproteobacteria
Methylotenera mobilis JLW8 [CP001672]
127754
127830
+
Pro
TGG
[Ensembl]
¡û
>C09107779
CP001672
Betaproteobacteria
Methylotenera mobilis JLW8 [CP001672]
239293
239369
+
Pro
TGG
[Ensembl]
¡û
>W1911623983
PQVH01000006
Betaproteobacteria
Methylotenera oryzisoli La3113 [PQVH]
88896
88820
-
Pro
TGG
[ENA]
¡û
>W1911623996
PQVH01000010
Betaproteobacteria
Methylotenera oryzisoli La3113 [PQVH]
99462
99386
-
Pro
TGG
[ENA]
¡û
>C151089437
CP012020
Betaproteobacteria
Methylophilus sp. TWE2 [CP012020]
209313
209389
+
Pro
TGG
[Ensembl]
¡û
>ENV09000758
ABSP01031374
Freshwater sediment metagenome lwMethane_C1
324
400
+
Pro
TGG
[ENA]
¡û
>ENV09001141
ABSQ01037617
Freshwater sediment metagenome lwMethenol_C1
405
481
+
Pro
TGG
[ENA]
¡û
>ENV09001282
ABSR01000169
Freshwater sediment metagenome lwMethylamine_C1
555
631
+
Pro
TGG
[ENA]
¡û
>ENV09001304
ABSR01000873
Freshwater sediment metagenome lwMethylamine_C1
1364
1288
-
Pro
TGG
[ENA]
¡û
>ENV09001312
ABSR01001194
Freshwater sediment metagenome lwMethylamine_C1
2136
2212
+
Pro
TGG
[ENA]
¡û
>ENV09001322
ABSR01001345
Freshwater sediment metagenome lwMethylamine_C1
1380
1304
-
Pro
TGG
[ENA]
¡û
>ENV09001326
ABSR01001481
Freshwater sediment metagenome lwMethylamine_C1
4194
4270
+
Pro
TGG
[ENA]
¡û
>ENV09001343
ABSR01002296
Freshwater sediment metagenome lwMethylamine_C1
823
747
-
Pro
TGG
[ENA]
¡û
>ENV09001348
ABSR01002410
Freshwater sediment metagenome lwMethylamine_C1
664
740
+
Pro
TGG
[ENA]
¡û
>ENV09001364
ABSR01003424
Freshwater sediment metagenome lwMethylamine_C1
26
102
+
Pro
TGG
[ENA]
¡û
>ENV09001370
ABSR01003714
Freshwater sediment metagenome lwMethylamine_C1
1410
1334
-
Pro
TGG
[ENA]
¡û
>ENV09001390
ABSR01004580
Freshwater sediment metagenome lwMethylamine_C1
4059
4135
+
Pro
TGG
[ENA]
¡û
>ENV09001424
ABSR01006578
Freshwater sediment metagenome lwMethylamine_C1
1090
1014
-
Pro
TGG
[ENA]
¡û
>ENV09001471
ABSR01013550
Freshwater sediment metagenome lwMethylamine_C1
266
190
-
Pro
TGG
[ENA]
¡û
>ENV09001533
ABSR01025017
Freshwater sediment metagenome lwMethylamine_C1
10
86
+
Pro
TGG
[ENA]
¡û
>C10109336
CP002056
Betaproteobacteria
Methylotenera versatilis 301 [CP002056]
163400
163476
+
Pro
TGG
[Ensembl]
¡û
>C10109361
CP002056
Betaproteobacteria
Methylotenera versatilis 301 [CP002056]
2954670
2954594
-
Pro
TGG
[Ensembl]
¡û
>W1511431980
JUGE01000001
Betaproteobacteria
Methylotenera sp. N17 [JUGE]
2581634
2581710
+
Pro
TGG
[ENA]
¡û
>W1511432014
JUGF01000002
Betaproteobacteria
Methylotenera versatilis 7 [JUGF]
838327
838403
+
Pro
TGG
[ENA]
¡û
>W1511433411
JUHE01000001
Betaproteobacteria
Methylophilus sp. Q8 [JUHE]
826039
825963
-
Pro
TGG
[ENA]
¡û
>W1511433534
JUHH01000001
Betaproteobacteria
Methylotenera sp. G11 [JUHH]
1954368
1954444
+
Pro
TGG
[ENA]
¡û
>W1511433551
JUHH01000001
Betaproteobacteria
Methylotenera sp. G11 [JUHH]
1727839
1727763
-
Pro
TGG
[ENA]
¡û
>W1610740423
LMQQ01000002
Betaproteobacteria
Methylophilus sp. Leaf414 [LMQQ]
298062
298138
+
Pro
TGG
[ENA]
¡û
>W1610740514
LMQS01000004
Betaproteobacteria
Methylophilus sp. Leaf416 [LMQS]
232946
232870
-
Pro
TGG
[ENA]
¡û
>W1610740739
LMQX01000005
Betaproteobacteria
Methylophilus sp. Leaf459 [LMQX]
50343
50267
-
Pro
TGG
[ENA]
¡û
>W1610753564
LNEP01000005
Betaproteobacteria
Betaproteobacteria bacterium Ga0077540 [LNEP]
42817
42741
-
Pro
TGG
[ENA]
¡û
>W1710520792
FNFX01000004
Betaproteobacteria
Methylophilus rhizosphaerae [FNFX]
205149
205073
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK