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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148288 (45 seq.)
>W1710921068
LNZF01000002
Bacillota
Paenibacillus polymyxa [LNZF]
1242555
1242480
-
Pro
TGG
[ENA]
¡û
>W1710921103
LNZF01000005
Bacillota
Paenibacillus polymyxa [LNZF]
288867
288791
-
Pro
TGG
[ENA]
¡û
>W1710921126
LNZF01000017
Bacillota
Paenibacillus polymyxa [LNZF]
53967
53892
-
Pro
TGG
[ENA]
¡û
>W1710921147
LNZF01000026
Bacillota
Paenibacillus polymyxa [LNZF]
4134
4059
-
Pro
TGG
[ENA]
¡û
>W1711009821
LQQX01000015
Bacillota
Paenibacillus jamilae [LQQX]
1081
1156
+
Pro
TGG
[ENA]
¡û
>W1711009873
LQQX01000142
Bacillota
Paenibacillus jamilae [LQQX]
221
296
+
Pro
TGG
[ENA]
¡û
>W1711009880
LQQX01000175
Bacillota
Paenibacillus jamilae [LQQX]
223
299
+
Pro
TGG
[ENA]
¡û
>W1711220491
LXQN01000007
Bacillota
Paenibacillus sp. AD87 [LXQN]
325124
325197
+
Pro
TGG
[ENA]
¡û
>W1711220505
LXQN01000007
Bacillota
Paenibacillus sp. AD87 [LXQN]
5190766
5190691
-
Pro
TGG
[ENA]
¡û
>W1711220546
LXQN01000021
Bacillota
Paenibacillus sp. AD87 [LXQN]
75055
75130
+
Pro
TGG
[ENA]
¡û
>W1711220563
LXQN01000022
Bacillota
Paenibacillus sp. AD87 [LXQN]
654215
654142
-
Pro
TGG
[ENA]
¡û
>W1711220580
LXQN01000022
Bacillota
Paenibacillus sp. AD87 [LXQN]
613779
613704
-
Pro
TGG
[ENA]
¡û
>W1711340490
MCBP01000021
Bacillota
Paenibacillus kribbensis [MCBP]
1301
1376
+
Pro
TGG
[ENA]
¡û
>W1711340501
MCBP01000027
Bacillota
Paenibacillus kribbensis [MCBP]
19921
19846
-
Pro
TGG
[ENA]
¡û
>W1711340522
MCBP01000037
Bacillota
Paenibacillus kribbensis [MCBP]
2177
2252
+
Pro
TGG
[ENA]
¡û
>W1711633865
MPTS01000009
Bacillota
Paenibacillus odorifer [MPTS]
234538
234465
-
Pro
TGG
[ENA]
¡û
>W131203816
ASZU01000010
Bacillota
Laceyella sacchari 1·î1Æü [ASZU]
160197
160273
+
Pro
TGG
[ENA]
¡û
>W131203817
ASZU01000010
Bacillota
Laceyella sacchari 1·î1Æü [ASZU]
160317
160393
+
Pro
TGG
[ENA]
¡û
>W131203818
ASZU01000010
Bacillota
Laceyella sacchari 1·î1Æü [ASZU]
160439
160515
+
Pro
TGG
[ENA]
¡û
>W141252001
CBRA020000078
Bacillota
Paenibacillus sp. P22 [CBRA]
49604
49680
+
Pro
TGG
[ENA]
¡û
>W141252013
CBRA020000083
Bacillota
Paenibacillus sp. P22 [CBRA]
14888
14812
-
Pro
TGG
[ENA]
¡û
>C191119647
CP034118
Bacillota
Staphylospora marina SCSIO 07575 [CP034118]
657529
657605
+
Pro
TGG
-
¡û
>C141010913
CP006941
Bacillota
Paenibacillus polymyxa CR1 [CP006941]
344993
345068
+
Pro
TGG
-
¡û
>C141010944
CP006941
Bacillota
Paenibacillus polymyxa CR1 [CP006941]
5193076
5193001
-
Pro
TGG
-
¡û
>C141010969
CP006941
Bacillota
Paenibacillus polymyxa CR1 [CP006941]
4495234
4495159
-
Pro
TGG
-
¡û
>W1911680740
QJKK01000001
Bacillota
Thermoflavimicrobium daqui FBKL4.011 [QJKK]
523156
523080
-
Pro
TGG
[ENA]
¡û
>W1911680741
QJKK01000001
Bacillota
Thermoflavimicrobium daqui FBKL4.011 [QJKK]
523037
522961
-
Pro
TGG
[ENA]
¡û
>W1510089540
CECI01000007
Bacillota
Risungbinella massiliensis GD1 [CECI]
548261
548188
-
Pro
TGG
[ENA]
¡û
>W1511577309
LAQQ01000001
Bacillota
Paenibacillus dauci H9 [LAQQ]
1603083
1603008
-
Pro
TGG
[ENA]
¡û
>W1511577315
LAQQ01000003
Bacillota
Paenibacillus dauci H9 [LAQQ]
352845
352770
-
Pro
TGG
[ENA]
¡û
>W1511577330
LAQQ01000006
Bacillota
Paenibacillus dauci H9 [LAQQ]
450565
450490
-
Pro
TGG
[ENA]
¡û
>W1511577342
LAQQ01000011
Bacillota
Paenibacillus dauci H9 [LAQQ]
698
773
+
Pro
TGG
[ENA]
¡û
>C121009287
CP003235
Bacillota
Paenibacillus mucilaginosus 3016 [CP003235]
261375
261448
+
Pro
TGG
[Ensembl]
¡û
>C121009372
CP003235
Bacillota
Paenibacillus mucilaginosus 3016 [CP003235]
1601803
1601876
+
Pro
TGG
[Ensembl]
¡û
>C121009419
CP003235
Bacillota
Paenibacillus mucilaginosus 3016 [CP003235]
7356140
7356067
-
Pro
TGG
[Ensembl]
¡û
>W1710531287
FNPL01000002
Bacillota
Thermoactinomyces sp. DSM 45892 [FNPL]
205352
205276
-
Pro
TGG
[ENA]
¡û
>W1710531341
FNPL01000022
Bacillota
Thermoactinomyces sp. DSM 45892 [FNPL]
29030
29106
+
Pro
TGG
[ENA]
¡û
>W1710544904
FOBD01000004
Bacillota
Paenibacillus sp. OK003 [FOBD]
1386
1459
+
Pro
TGG
[ENA]
¡û
>W1710544924
FOBD01000011
Bacillota
Paenibacillus sp. OK003 [FOBD]
220818
220743
-
Pro
TGG
[ENA]
¡û
>W1710544947
FOBD01000023
Bacillota
Paenibacillus sp. OK003 [FOBD]
1460
1535
+
Pro
TGG
[ENA]
¡û
>W1710544984
FOBD01000034
Bacillota
Paenibacillus sp. OK003 [FOBD]
32796
32723
-
Pro
TGG
[ENA]
¡û
>W1710547079
FOCQ01000013
Bacillota
Lihuaxuella thermophila [FOCQ]
91327
91403
+
Pro
TGG
[ENA]
¡û
>W1710581234
FPJZ01000002
Bacillota
Thermoactinomyces sp. DSM 45891 [FPJZ]
56002
56078
+
Pro
TGG
[ENA]
¡û
>W1710581248
FPJZ01000012
Bacillota
Thermoactinomyces sp. DSM 45891 [FPJZ]
41255
41179
-
Pro
TGG
[ENA]
¡û
>W1710584278
FQVL01000003
Bacillota
Seinonella peptonophila [FQVL]
201619
201695
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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