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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148402 (33 seq.)
>W1711179420
LWHQ01000021
Alphaproteobacteria
Methylobacterium platani [LWHQ]
51088
51012
-
Arg
TCT
[ENA]
¡û
>W1711350385
MCRJ01000061
Alphaproteobacteria
Methylobrevis pamukkalensis [MCRJ]
15591
15667
+
Arg
TCT
[ENA]
¡û
>W131186307
ARWA01000001
Alphaproteobacteria
Methyloferula stellata AR4 [ARWA]
2344859
2344935
+
Arg
TCT
[ENA]
¡û
>W131218799
ATYA01000002
Alphaproteobacteria
Methylocapsa acidiphila B2 [ATYA]
948370
948294
-
Arg
TCT
[ENA]
¡û
>W131230387
AUHO01000006
Alphaproteobacteria
Kaistia adipata DSM 17808 [AUHO]
152546
152622
+
Arg
TCT
[ENA]
¡û
>w026456
ABAY01000005
Alphaproteobacteria
Methylobacterium sp. 4-46 [ABAY]
18778
18856
+
Arg
TCT
[ENA]
¡û
>w001840
AAAP01003712
Alphaproteobacteria
Paramagnetospirillum magnetotacticum [AAAP]
2255
2177
-
Arg
TCT
[ENA]
¡û
>W08006176
ABIP01000121
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [ABIP]
11837
11764
-
Arg
TCT
[ENA]
¡û
>C08006468
CP000943
Alphaproteobacteria
Methylobacterium sp. 4-46 [CP000943]
2690109
2690036
-
Arg
TCT
[Ensembl]
¡û
>WENV170649029
JRHI01005174
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
504
580
+
Arg
TCT
[ENA]
¢þ
>C181179990
CP029550
Alphaproteobacteria
Methylobacterium durans 17SD2-17 [CP029550]
4261512
4261588
+
Arg
TCT
-
¡û
>C181180244
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
1680849
1680773
-
Arg
TCT
-
¡û
>C181227364
LT960614
Alphaproteobacteria
Hartmannibacter diazotrophicus type strain: E19 [LT960614]
2154070
2154146
+
Arg
TCT
-
¡û
>C191221090
LR590083
Alphaproteobacteria
Beijerinckiaceae bacterium RH AL1 [LR590083]
861338
861262
-
Arg
TCT
-
¡û
>C09107874
CP001349
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [CP001349]
2206632
2206556
-
Arg
TCT
[Ensembl]
¡û
>W1911653500
QDFX01000002
Alphaproteobacteria
Rhizobiaceae bacterium CPCC 101076 [QDFX]
82044
82120
+
Arg
TCT
[ENA]
¡û
>W1810079898
PELK01001552
Alphaproteobacteria
Methylobacterium frigidaeris IER25-16 [PELK]
6855
6931
+
Arg
TCT
[ENA]
¡û
>W1810658532
QJJJ01000002
Alphaproteobacteria
Methylobacterium sp. B4 [QJJJ]
411747
411823
+
Arg
TCT
[ENA]
¡û
>W1511400935
JTHG01000056
Alphaproteobacteria
Methylobacterium indicum SE3.6 [JTHG]
7468
7544
+
Arg
TCT
[ENA]
¡û
>W1511507915
JXOD01000358
Alphaproteobacteria
Methylobacterium platani JCM 14648 [JXOD]
4664
4588
-
Arg
TCT
[ENA]
¡û
>W1511563236
LABX01000081
Alphaproteobacteria
Methylobacterium aquaticum DSM 16371 [LABX]
17499
17575
+
Arg
TCT
[ENA]
¡û
>W1511563329
LABY01000229
Alphaproteobacteria
Methylobacterium variabile DSM 16961 [LABY]
2082
2006
-
Arg
TCT
[ENA]
¡û
>C161001160
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
4574396
4574472
+
Arg
TCT
[Ensembl]
¡û
>W1610590426
LDRL01000031
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
120512
120588
+
Arg
TCT
[ENA]
¡û
>W1610590497
LDRM01000074
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
49475
49399
-
Arg
TCT
[ENA]
¡û
>W1610590550
LDRN01000049
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
49428
49352
-
Arg
TCT
[ENA]
¡û
>WENV077551
AAFX01059097
Soil microbial communities from Minnesota Farm
452
376
-
Arg
TCT
[ENA]
>W1610987321
LWHQ01000021
Alphaproteobacteria
Methylobacterium platani [LWHQ]
51088
51012
-
Arg
TCT
[ENA]
¡û
>W1710548804
FOEB01000003
Alphaproteobacteria
Methylobacterium sp. ap11 [FOEB]
33721
33645
-
Arg
TCT
[ENA]
¡û
>W1710560684
FONO01000020
Alphaproteobacteria
Methylobacterium sp. yr596 [FONO]
17165
17241
+
Arg
TCT
[ENA]
¡û
>W1710709706
LDRL01000031
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
120512
120588
+
Arg
TCT
[ENA]
¡û
>W1710709777
LDRM01000074
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
49475
49399
-
Arg
TCT
[ENA]
¡û
>W1710709830
LDRN01000049
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
49428
49352
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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