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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148416 (115 seq.)
>W1710853391
LLWP01000008
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
270677
270603
-
Asn
GTT
[ENA]
¡û
>W1710870414
LMKM01000012
Bacteroidota
Pedobacter sp. Leaf216 [LMKM]
242946
242872
-
Asn
GTT
[ENA]
¡û
>W1710870415
LMKM01000012
Bacteroidota
Pedobacter sp. Leaf216 [LMKM]
216237
216161
-
Asn
GTT
[ENA]
¡û
>W1710871280
LMLE01000009
Bacteroidota
Pedobacter sp. Leaf41 [LMLE]
28024
28100
+
Asn
GTT
[ENA]
¡û
>W1710871281
LMLE01000009
Bacteroidota
Pedobacter sp. Leaf41 [LMLE]
28182
28258
+
Asn
GTT
[ENA]
¡û
>W1710876320
LMPD01000001
Bacteroidota
Pedobacter sp. Leaf176 [LMPD]
853798
853874
+
Asn
GTT
[ENA]
¡û
>W1710876321
LMPD01000001
Bacteroidota
Pedobacter sp. Leaf176 [LMPD]
853938
854014
+
Asn
GTT
[ENA]
¡û
>W1710877073
LMPU01000010
Bacteroidota
Pedobacter sp. Leaf194 [LMPU]
122384
122308
-
Asn
GTT
[ENA]
¡û
>W1710877074
LMPU01000010
Bacteroidota
Pedobacter sp. Leaf194 [LMPU]
122224
122150
-
Asn
GTT
[ENA]
¡û
>W1710877075
LMPU01000010
Bacteroidota
Pedobacter sp. Leaf194 [LMPU]
118948
118874
-
Asn
GTT
[ENA]
¡û
>W1710888302
LMZQ01000003
Bacteroidota
Pedobacter ginsenosidimutans [LMZQ]
249382
249306
-
Asn
GTT
[ENA]
¡û
>W1710888303
LMZQ01000003
Bacteroidota
Pedobacter ginsenosidimutans [LMZQ]
230329
230253
-
Asn
GTT
[ENA]
¡û
>W1712082043
NHOT01000001
Bacteroidota
Pedobacter sp. AJM [NHOT]
293773
293697
-
Asn
GTT
[ENA]
¡û
>W1712082044
NHOT01000001
Bacteroidota
Pedobacter sp. AJM [NHOT]
293610
293534
-
Asn
GTT
[ENA]
¡û
>W1712082045
NHOT01000001
Bacteroidota
Pedobacter sp. AJM [NHOT]
293174
293098
-
Asn
GTT
[ENA]
¡û
>C171117338
CP021237
Bacteroidota
Sphingobacteriaceae bacterium GW460-11-11-14-LB5 [CP021237]
5906904
5906980
+
Asn
GTT
-
¡û
>C171117339
CP021237
Bacteroidota
Sphingobacteriaceae bacterium GW460-11-11-14-LB5 [CP021237]
5949475
5949549
+
Asn
GTT
-
¡û
>WENV180637518
OCRG01035312
[OCRG] marine metagenome; seawater
249
175
-
Asn
GTT
[ENA]
¢þ
>W141142863
AWRU01000019
Bacteroidota
Pedobacter sp. V48 [AWRU]
91494
91568
+
Asn
GTT
[ENA]
¡û
>W141142865
AWRU01000022
Bacteroidota
Pedobacter sp. V48 [AWRU]
55852
55926
+
Asn
GTT
[ENA]
¡û
>W141187583
AYMG01000003
Bacteroidota
Pedobacter jeongneungensis H1ai [AYMG]
96349
96275
-
Asn
GTT
[ENA]
¡û
>W141187584
AYMG01000003
Bacteroidota
Pedobacter jeongneungensis H1ai [AYMG]
61608
61534
-
Asn
GTT
[ENA]
¡û
>W141292037
JAUG01000092
Bacteroidota
Pedobacter borealis DSM 19626 [JAUG]
20151
20227
+
Asn
GTT
[ENA]
¡û
>W141292051
JAUG01000163
Bacteroidota
Pedobacter borealis DSM 19626 [JAUG]
6285
6361
+
Asn
GTT
[ENA]
¡û
>WENV183092803
OLLL01000224
[OLLL] soil metagenome; soil
310191
310117
-
Asn
GTT
[ENA]
¢þ
>W141350125
JCKI01000008
Bacteroidota
Pedobacter sp. R20-19 [JCKI]
9390
9314
-
Asn
GTT
[ENA]
¡û
>W141350126
JCKI01000008
Bacteroidota
Pedobacter sp. R20-19 [JCKI]
9228
9154
-
Asn
GTT
[ENA]
¡û
>WENV183741758
PJUG01007121
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
243
319
+
Asn
GTT
[ENA]
¢þ
>WENV183742615
PJUI01000030
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
157349
157425
+
Asn
GTT
[ENA]
¢þ
>WENV183743707
PJUJ01026924
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
422
348
-
Asn
GTT
[ENA]
¢þ
>WENV183745194
PJUL01005178
[PJUL] feces metagenome; Chicken feces enriched on filter paper
425
351
-
Asn
GTT
[ENA]
¢þ
>WENV170176474
CEOS01082041
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2110
2186
+
Asn
GTT
[ENA]
¢þ
>WENV170373035
CETS01158580
[CETS] marine metagenome genome assembly TARA_122_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
701
625
-
Asn
GTT
[ENA]
¢þ
>WENV170388814
CETZ01125535
[CETZ] marine metagenome genome assembly TARA_132_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
14290
14214
-
Asn
GTT
[ENA]
¢þ
>WENV170434166
CEUS01239804
[CEUS] marine metagenome genome assembly TARA_125_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
364
288
-
Asn
GTT
[ENA]
¢þ
>WENV170559504
CXWL01126271
[CXWL] groundwater metagenome; biofilm material
109
185
+
Asn
GTT
[ENA]
¢þ
>WENV171003218
NNBT01002470
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
6372
6446
+
Asn
GTT
[ENA]
¢þ
>WENV171003234
NNBT01002684
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
10014
10088
+
Asn
GTT
[ENA]
¢þ
>C181094370
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
3808714
3808638
-
Asn
GTT
-
¡û
>C181094371
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
3794218
3794142
-
Asn
GTT
-
¡û
>C191226473
LS999839
Bacteroidota
Pedobacter schmidteae eg [LS999839]
1949173
1949099
-
Asn
GTT
-
¡û
>C191226474
LS999839
Bacteroidota
Pedobacter schmidteae eg [LS999839]
1939312
1939238
-
Asn
GTT
-
¡û
>W141727623
JNFF01000025
Bacteroidota
Pedobacter antarcticus 4BY [JNFF]
20498
20574
+
Asn
GTT
[ENA]
¡û
>W1911496552
OCMT01000002
Bacteroidota
Pedobacter xixiisoli CGMCC 1.12803 [OCMT]
1261458
1261384
-
Asn
GTT
[ENA]
¡û
>W1911496553
OCMT01000002
Bacteroidota
Pedobacter xixiisoli CGMCC 1.12803 [OCMT]
1261250
1261176
-
Asn
GTT
[ENA]
¡û
>W1911647670
QAJQ01000033
Bacteroidota
Pedobacter sp. KBW01 [QAJQ]
11201
11125
-
Asn
GTT
[ENA]
¡û
>W1911647673
QAJQ01000039
Bacteroidota
Pedobacter sp. KBW01 [QAJQ]
68422
68496
+
Asn
GTT
[ENA]
¡û
>W1810474651
QAIL01000287
Bacteroidota
Pedobacter sp. HMWF019 [QAIL]
168
244
+
Asn
GTT
[ENA]
¡û
>W1810503844
QBKL01000011
Bacteroidota
Pedobacter sp. OK291 [QBKL]
786230
786306
+
Asn
GTT
[ENA]
¡û
>W1810503845
QBKL01000011
Bacteroidota
Pedobacter sp. OK291 [QBKL]
825507
825583
+
Asn
GTT
[ENA]
¡û
>W1810503929
QBKM01000009
Bacteroidota
Pedobacter sp. YR016 [QBKM]
81350
81424
+
Asn
GTT
[ENA]
¡û
>W1810503930
QBKM01000009
Bacteroidota
Pedobacter sp. YR016 [QBKM]
82451
82525
+
Asn
GTT
[ENA]
¡û
>W1810606104
QGNY01000003
Bacteroidota
Pedobacter paludis R-8 [QGNY]
292912
292838
-
Asn
GTT
[ENA]
¡û
>W1810606105
QGNY01000003
Bacteroidota
Pedobacter paludis R-8 [QGNY]
292504
292428
-
Asn
GTT
[ENA]
¡û
>W1810606164
QGNZ01000003
Bacteroidota
Pedobacter yonginense KCTC22721 [QGNZ]
552965
552891
-
Asn
GTT
[ENA]
¡û
>W1810606165
QGNZ01000003
Bacteroidota
Pedobacter yonginense KCTC22721 [QGNZ]
552811
552735
-
Asn
GTT
[ENA]
¡û
>W1810693878
QLLR01000004
Bacteroidota
Pedobacter cryoconitis DSM 14825 [QLLR]
707
633
-
Asn
GTT
[ENA]
¡û
>W1810693879
QLLR01000004
Bacteroidota
Pedobacter cryoconitis DSM 14825 [QLLR]
513
439
-
Asn
GTT
[ENA]
¡û
>W1810704240
QMHN01000007
Bacteroidota
Pedobacter chitinilyticus CM134L-2 [QMHN]
154532
154456
-
Asn
GTT
[ENA]
¡û
>W1810704241
QMHN01000007
Bacteroidota
Pedobacter chitinilyticus CM134L-2 [QMHN]
154153
154079
-
Asn
GTT
[ENA]
¡û
>W1810704284
QMHO01000013
Bacteroidota
Pedobacter nanyangensis Q-4 [QMHO]
131193
131267
+
Asn
GTT
[ENA]
¡û
>W1810704285
QMHO01000013
Bacteroidota
Pedobacter nanyangensis Q-4 [QMHO]
131340
131416
+
Asn
GTT
[ENA]
¡û
>W1810704361
QMHQ01000004
Bacteroidota
Pedobacter namyangjuensis 5G38 [QMHQ]
182243
182317
+
Asn
GTT
[ENA]
¡û
>W1810704362
QMHQ01000004
Bacteroidota
Pedobacter namyangjuensis 5G38 [QMHQ]
182402
182476
+
Asn
GTT
[ENA]
¡û
>W1810720088
QNQU01000020
Bacteroidota
Pedobacter miscanthi RS10 [QNQU]
115632
115558
-
Asn
GTT
[ENA]
¡û
>W1810720089
QNQU01000020
Bacteroidota
Pedobacter miscanthi RS10 [QNQU]
77869
77795
-
Asn
GTT
[ENA]
¡û
>W1810761058
QPKV01000003
Bacteroidota
Pedobacter chinensis JDX94 [QPKV]
863874
863948
+
Asn
GTT
[ENA]
¡û
>W1810761059
QPKV01000003
Bacteroidota
Pedobacter chinensis JDX94 [QPKV]
864034
864108
+
Asn
GTT
[ENA]
¡û
>W1810885522
QUNJ01000005
Bacteroidota
Pedobacter sp. YR510 [QUNJ]
148698
148624
-
Asn
GTT
[ENA]
¡û
>W1810885523
QUNJ01000005
Bacteroidota
Pedobacter sp. YR510 [QUNJ]
148464
148390
-
Asn
GTT
[ENA]
¡û
>W1810885621
QUNL01000038
Bacteroidota
Pedobacter sp. OV280 [QUNL]
38736
38810
+
Asn
GTT
[ENA]
¡û
>W1810885625
QUNL01000043
Bacteroidota
Pedobacter sp. OV280 [QUNL]
249
173
-
Asn
GTT
[ENA]
¡û
>C11109401
CP002542
Bacteroidota
Fluviicola taffensis DSM 16823 [CP002542]
1526625
1526701
+
Asn
GTT
[Ensembl]
¡û
>W1511390972
JSYN01000025
Bacteroidota
Pedobacter kyungheensis KACC 16221 [JSYN]
1243
1317
+
Asn
GTT
[ENA]
¡û
>W1511390973
JSYN01000025
Bacteroidota
Pedobacter kyungheensis KACC 16221 [JSYN]
11566
11640
+
Asn
GTT
[ENA]
¡û
>W1511509424
JXRA01000058
Bacteroidota
Pedobacter lusitanus NL19 [JXRA]
43420
43494
+
Asn
GTT
[ENA]
¡û
>W1511509425
JXRA01000058
Bacteroidota
Pedobacter lusitanus NL19 [JXRA]
43612
43688
+
Asn
GTT
[ENA]
¡û
>W1511646576
LECU01000006
Bacteroidota
Pedobacter sp. BMA [LECU]
847117
847193
+
Asn
GTT
[ENA]
¡û
>W1511646577
LECU01000006
Bacteroidota
Pedobacter sp. BMA [LECU]
847263
847337
+
Asn
GTT
[ENA]
¡û
>C161049125
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
725741
725817
+
Asn
GTT
[Ensembl]
¡û
>C161049186
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
767773
767697
-
Asn
GTT
[Ensembl]
¡û
>C161073022
CP014504
Bacteroidota
Pedobacter cryoconitis PAMC 27485 [CP014504]
5505731
5505805
+
Asn
GTT
[Ensembl]
¡û
>C161073023
CP014504
Bacteroidota
Pedobacter cryoconitis PAMC 27485 [CP014504]
5505925
5506001
+
Asn
GTT
[Ensembl]
¡û
>W121063672
AJLG01000087
Bacteroidota
Pedobacter agri PB92 [AJLG]
1993
1917
-
Asn
GTT
[ENA]
¡û
>W121063673
AJLG01000087
Bacteroidota
Pedobacter agri PB92 [AJLG]
1759
1685
-
Asn
GTT
[ENA]
¡û
>W1610612113
LGEL01000009
Bacteroidota
Pedobacter panaciterrae [LGEL]
112559
112635
+
Asn
GTT
[ENA]
¡û
>W1610612114
LGEL01000009
Bacteroidota
Pedobacter panaciterrae [LGEL]
114464
114540
+
Asn
GTT
[ENA]
¡û
>W1610716515
LLWP01000008
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
270677
270603
-
Asn
GTT
[ENA]
¡û
>W1610732760
LMKM01000012
Bacteroidota
Pedobacter sp. Leaf216 [LMKM]
242946
242872
-
Asn
GTT
[ENA]
¡û
>W1610732761
LMKM01000012
Bacteroidota
Pedobacter sp. Leaf216 [LMKM]
216237
216161
-
Asn
GTT
[ENA]
¡û
>W1610733626
LMLE01000009
Bacteroidota
Pedobacter sp. Leaf41 [LMLE]
28024
28100
+
Asn
GTT
[ENA]
¡û
>W1610733627
LMLE01000009
Bacteroidota
Pedobacter sp. Leaf41 [LMLE]
28182
28258
+
Asn
GTT
[ENA]
¡û
>W1610738666
LMPD01000001
Bacteroidota
Pedobacter sp. Leaf176 [LMPD]
853798
853874
+
Asn
GTT
[ENA]
¡û
>W1610738667
LMPD01000001
Bacteroidota
Pedobacter sp. Leaf176 [LMPD]
853938
854014
+
Asn
GTT
[ENA]
¡û
>W1610739419
LMPU01000010
Bacteroidota
Pedobacter sp. Leaf194 [LMPU]
122384
122308
-
Asn
GTT
[ENA]
¡û
>W1610739420
LMPU01000010
Bacteroidota
Pedobacter sp. Leaf194 [LMPU]
122224
122150
-
Asn
GTT
[ENA]
¡û
>W1610739421
LMPU01000010
Bacteroidota
Pedobacter sp. Leaf194 [LMPU]
118948
118874
-
Asn
GTT
[ENA]
¡û
>W1610748680
LMZQ01000003
Bacteroidota
Pedobacter ginsenosidimutans [LMZQ]
249382
249306
-
Asn
GTT
[ENA]
¡û
>W1610748681
LMZQ01000003
Bacteroidota
Pedobacter ginsenosidimutans [LMZQ]
230329
230253
-
Asn
GTT
[ENA]
¡û
>W1710516068
FNCH01000017
Bacteroidota
Pedobacter terrae [FNCH]
243
169
-
Asn
GTT
[ENA]
¡û
>W1710516076
FNCH01000022
Bacteroidota
Pedobacter terrae [FNCH]
73833
73759
-
Asn
GTT
[ENA]
¡û
>W1710519677
FNEX01000011
Bacteroidota
Pedobacter sp. ok626 [FNEX]
131974
131898
-
Asn
GTT
[ENA]
¡û
>W1710519678
FNEX01000011
Bacteroidota
Pedobacter sp. ok626 [FNEX]
131612
131536
-
Asn
GTT
[ENA]
¡û
>W1710522164
FNGZ01000008
Bacteroidota
Pedobacter antarcticus [FNGZ]
64522
64598
+
Asn
GTT
[ENA]
¡û
>W1710533307
FNRA01000006
Bacteroidota
Pedobacter hartonius [FNRA]
180666
180740
+
Asn
GTT
[ENA]
¡û
>W1710533308
FNRA01000006
Bacteroidota
Pedobacter hartonius [FNRA]
181042
181118
+
Asn
GTT
[ENA]
¡û
>W1710551695
FOGG01000076
Bacteroidota
Pedobacter rhizosphaerae [FOGG]
75
1
-
Asn
GTT
[ENA]
¡û
>W1710555459
FOJM01000007
Bacteroidota
Pedobacter suwonensis [FOJM]
154065
154141
+
Asn
GTT
[ENA]
¡û
>W1710555460
FOJM01000007
Bacteroidota
Pedobacter suwonensis [FOJM]
137152
137076
-
Asn
GTT
[ENA]
¡û
>W1710560893
FONS01000015
Bacteroidota
Pedobacter antarcticus [FONS]
514
438
-
Asn
GTT
[ENA]
¡û
>W1710563359
FOPP01000009
Bacteroidota
Pedobacter insulae [FOPP]
235555
235631
+
Asn
GTT
[ENA]
¡û
>W1710606778
FWYB01000003
Bacteroidota
Pedobacter nyackensis [FWYB]
334702
334626
-
Asn
GTT
[ENA]
¡û
>W1710606779
FWYB01000003
Bacteroidota
Pedobacter nyackensis [FWYB]
333004
332928
-
Asn
GTT
[ENA]
¡û
>W1710733619
LGEL01000009
Bacteroidota
Pedobacter panaciterrae [LGEL]
112559
112635
+
Asn
GTT
[ENA]
¡û
>W1710733620
LGEL01000009
Bacteroidota
Pedobacter panaciterrae [LGEL]
114464
114540
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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