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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148471 (108 seq.)
>W1711049872
LRRB01000206
Actinomycetota
Aldersonia kunmingensis [LRRB]
54640
54714
+
Ile
GAT
[ENA]
¡û
>W1711065091
LSBM01000294
Actinomycetota
Rhodococcus sp. SC4 [LSBM]
105760
105834
+
Ile
GAT
[ENA]
¡û
>W1711066577
LSCY01000013
Actinomycetota
Corynebacterium kroppenstedtii [LSCY]
48967
49043
+
Ile
GAT
[ENA]
¡û
>W1711092519
LTEE01000009
Actinomycetota
Corynebacterium sp. HMSC076C10 [LTEE]
272
198
-
Ile
GAT
[ENA]
¡û
>W1711093842
LTFJ01000010
Actinomycetota
Corynebacterium sp. HMSC064E08 [LTFJ]
63233
63307
+
Ile
GAT
[ENA]
¡û
>W1711095094
LTGN01000007
Actinomycetota
Corynebacterium sp. HMSC063F04 [LTGN]
63261
63337
+
Ile
GAT
[ENA]
¡û
>W1711096239
LTHP01000016
Actinomycetota
Corynebacterium sp. HMSC077C02 [LTHP]
35143
35217
+
Ile
GAT
[ENA]
¡û
>W1711096292
LTHQ01000011
Actinomycetota
Corynebacterium sp. HMSC063G05 [LTHQ]
24757
24683
-
Ile
GAT
[ENA]
¡û
>W1711096971
LTIG01000005
Actinomycetota
Corynebacterium sp. HMSC077G01 [LTIG]
281
207
-
Ile
GAT
[ENA]
¡û
>W1711097543
LTIU01000022
Actinomycetota
Corynebacterium sp. HMSC064H12 [LTIU]
63265
63339
+
Ile
GAT
[ENA]
¡û
>W1711098042
LTJF01000025
Actinomycetota
Corynebacterium sp. HMSC063A05 [LTJF]
289
215
-
Ile
GAT
[ENA]
¡û
>W1711098563
LTJR01000019
Actinomycetota
Corynebacterium sp. HMSC074C11 [LTJR]
63371
63445
+
Ile
GAT
[ENA]
¡û
>W1711099054
LTKD01000030
Actinomycetota
Corynebacterium sp. HMSC077G07 [LTKD]
63212
63286
+
Ile
GAT
[ENA]
¡û
>W1711099345
LTKK01000027
Actinomycetota
Corynebacterium sp. HMSC055G02 [LTKK]
63232
63306
+
Ile
GAT
[ENA]
¡û
>W1711102276
LTNP01000016
Actinomycetota
Corynebacterium sp. HMSC075F02 [LTNP]
63249
63323
+
Ile
GAT
[ENA]
¡û
>W1711102305
LTNQ01000008
Actinomycetota
Corynebacterium sp. HMSC074C05 [LTNQ]
29393
29317
-
Ile
GAT
[ENA]
¡û
>W1711102367
LTNR01000035
Actinomycetota
Corynebacterium sp. HMSC074C03 [LTNR]
63310
63386
+
Ile
GAT
[ENA]
¡û
>W1711102441
LTNS01000046
Actinomycetota
Corynebacterium sp. HMSC073B01 [LTNS]
63163
63237
+
Ile
GAT
[ENA]
¡û
>W1711102454
LTNT01000003
Actinomycetota
Corynebacterium sp. HMSC072D01 [LTNT]
43324
43398
+
Ile
GAT
[ENA]
¡û
>W1711102507
LTNU01000006
Actinomycetota
Corynebacterium sp. HMSC072B09 [LTNU]
63163
63237
+
Ile
GAT
[ENA]
¡û
>W1711102555
LTNV01000001
Actinomycetota
Corynebacterium sp. HMSC061H03 [LTNV]
50506
50580
+
Ile
GAT
[ENA]
¡û
>W1711103282
LTOO01000020
Actinomycetota
Corynebacterium sp. HMSC073H12 [LTOO]
32783
32707
-
Ile
GAT
[ENA]
¡û
>W1711103423
LTOS01000001
Actinomycetota
Corynebacterium sp. HMSC072B08 [LTOS]
63261
63335
+
Ile
GAT
[ENA]
¡û
>W1711107028
LTSJ01000041
Actinomycetota
Corynebacterium sp. HMSC064E07 [LTSJ]
63218
63292
+
Ile
GAT
[ENA]
¡û
>W1711110039
LTVE01000007
Actinomycetota
Corynebacterium sp. HMSC070B05 [LTVE]
289
215
-
Ile
GAT
[ENA]
¡û
>W1711112791
LTXS01000025
Actinomycetota
Corynebacterium sp. HMSC065H09 [LTXS]
63256
63330
+
Ile
GAT
[ENA]
¡û
>W1711113423
LTYH01000016
Actinomycetota
Corynebacterium sp. HMSC064E10 [LTYH]
134048
133974
-
Ile
GAT
[ENA]
¡û
>W1711114820
LTZQ01000002
Actinomycetota
Corynebacterium sp. HMSC11H10 [LTZQ]
63218
63292
+
Ile
GAT
[ENA]
¡û
>W1711114951
LTZS01000051
Actinomycetota
Corynebacterium sp. HMSC14H10 [LTZS]
70111
70185
+
Ile
GAT
[ENA]
¡û
>W1711168152
LVXE01000010
Actinomycetota
Mycobacterium leprae 7935681 [LVXE]
32380
32456
+
Ile
GAT
[ENA]
¡û
>W1711179548
LWHS01000006
Actinomycetota
Prescottella equi [LWHS]
142134
142060
-
Ile
GAT
[ENA]
¡û
>W1711186796
LWON01000004
Actinomycetota
Corynebacterium sp. HMSC14B06 [LWON]
71452
71526
+
Ile
GAT
[ENA]
¡û
>W1711187920
LWPW01000110
Actinomycetota
Corynebacterium sp. HMSC074C04 [LWPW]
3210
3136
-
Ile
GAT
[ENA]
¡û
>W1711234501
LYCQ01000083
Actinomycetota
Nocardia farcinica [LYCQ]
6803
6729
-
Ile
GAT
[ENA]
¡û
>W1711252900
LYPH01000099
Actinomycetota
Mycobacterium leprae 3125609 [LYPH]
27151
27075
-
Ile
GAT
[ENA]
¡û
>W1711281948
LZMP01000019
Actinomycetota
Gordonia sp. UCD-TK1 [LZMP]
21135
21061
-
Ile
GAT
[ENA]
¡û
>W1711427588
MIFV01000002
Actinomycetota
Corynebacterium amycolatum [MIFV]
63615
63689
+
Ile
GAT
[ENA]
¡û
>W1711507473
MKXS01000003
Actinomycetota
Corynebacterium sp. S1S1 [MKXS]
63317
63391
+
Ile
GAT
[ENA]
¡û
>W131161750
AQXZ01000014
Actinomycetota
Smaragdicoccus niigatensis DSM 44881 [AQXZ]
128442
128368
-
Ile
GAT
[ENA]
¡û
>W1711694716
MSIF01000022
Actinomycetota
Actinophytocola xinjiangensis [MSIF]
47156
47232
+
Ile
GAT
[ENA]
¡û
>W1711724009
MTPT01000014
Actinomycetota
Corynebacterium amycolatum [MTPT]
428
354
-
Ile
GAT
[ENA]
¡û
>C171002011
CP009248
Actinomycetota
Corynebacterium sphenisci DSM 44792 [CP009248]
15753
15829
+
Ile
GAT
-
¡û
>W131000436
AGEM01000005
Actinomycetota
Corynebacterium sp. HFH0082 [AGEM]
70258
70332
+
Ile
GAT
[ENA]
¡û
>W131159336
AQUY01000004
Actinomycetota
Corynebacterium ulceribovis DSM 45146 [AQUY]
59582
59658
+
Ile
GAT
[ENA]
¡û
>C013638
AL450380
Actinomycetota
Mycobacterium leprae [AL450380]
12194
12270
+
Ile
GAT
[Ensembl]
¡û
>WENV180554306
OCJN01000071
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
309
235
-
Ile
GAT
[ENA]
¢þ
>WENV180765577
ODIC01000199
[ODIC] human metagenome; G_DNA_R_Retroauricular crease
299
223
-
Ile
GAT
[ENA]
¢þ
>WENV180878616
ODLX01001069
[ODLX] human metagenome; G_DNA_R_Retroauricular crease
2951
2875
-
Ile
GAT
[ENA]
¢þ
>WENV180984460
ODVG01001585
[ODVG] human metagenome; G_DNA_R_Retroauricular crease
299
223
-
Ile
GAT
[ENA]
¢þ
>WENV181131766
OEGD01023764
[OEGD] human metagenome; G_DNA_L_Retroauricular crease
281
205
-
Ile
GAT
[ENA]
¢þ
>WENV181326328
OFLL01000113
[OFLL] metagenome; faeces
6694
6620
-
Ile
GAT
[ENA]
¢þ
>WENV181810214
OGSU01006783
[OGSU] human gut metagenome; fecal sample 7 from infant 5
341
417
+
Ile
GAT
[ENA]
¢þ
>WENV182628980
OJKR01000491
[OJKR] metagenome; surface
1
77
+
Ile
GAT
[ENA]
¢þ
>WENV182635976
OJKZ01000063
[OJKZ] metagenome; surface
2315
2239
-
Ile
GAT
[ENA]
¢þ
>WENV182640407
OJLB01008692
[OJLB] metagenome; surface
1
77
+
Ile
GAT
[ENA]
¢þ
>WENV182641135
OJLE01009896
[OJLE] metagenome; surface
746
670
-
Ile
GAT
[ENA]
¢þ
>WENV182641572
OJLI01002055
[OJLI] metagenome; surface
277
201
-
Ile
GAT
[ENA]
¢þ
>WENV182641760
OJLK01000074
[OJLK] metagenome; surface
1075
1151
+
Ile
GAT
[ENA]
¢þ
>WENV182642428
OJLM01014652
[OJLM] metagenome; surface
417
493
+
Ile
GAT
[ENA]
¢þ
>WENV182643083
OJLS01000547
[OJLS] metagenome; surface
4603
4679
+
Ile
GAT
[ENA]
¢þ
>WENV182643993
OJLW01004621
[OJLW] metagenome; surface
2667
2591
-
Ile
GAT
[ENA]
¢þ
>WENV182644509
OJLX01000917
[OJLX] metagenome; surface
410
486
+
Ile
GAT
[ENA]
¢þ
>WENV182644683
OJLY01000160
[OJLY] metagenome; surface
2315
2239
-
Ile
GAT
[ENA]
¢þ
>WENV182645608
OJLZ01000095
[OJLZ] metagenome; surface
13315
13391
+
Ile
GAT
[ENA]
¢þ
>WENV182646308
OJMA01001487
[OJMA] metagenome; surface
2873
2947
+
Ile
GAT
[ENA]
¢þ
>WENV182671596
OJNM01000415
[OJNM] metagenome; surface
812
888
+
Ile
GAT
[ENA]
¢þ
>WENV182802982
OJUH01000042
[OJUH] human gut metagenome; human gut
51336
51260
-
Ile
GAT
[ENA]
¢þ
>WENV182815148
OJYO01004677
[OJYO] human gut metagenome; human gut
841
767
-
Ile
GAT
[ENA]
¢þ
>WENV182820757
OKAP01000060
[OKAP] human gut metagenome; human gut
44996
45072
+
Ile
GAT
[ENA]
¢þ
>WENV182835477
OKFO01000016
[OKFO] human gut metagenome; human gut
31799
31875
+
Ile
GAT
[ENA]
¢þ
>WENV182837566
OKGJ01000219
[OKGJ] human gut metagenome; human gut
6785
6859
+
Ile
GAT
[ENA]
¢þ
>C181056541
CP022054
Actinomycetota
Corynebacterium jeikeium FDAARGOS_328 [CP022054]
1946750
1946824
+
Ile
GAT
-
¡û
>C181179811
CP029543
Actinomycetota
Mycobacterium leprae MRHRU-235-G [CP029543]
12187
12261
+
Ile
GAT
-
¡û
>C191000001
AP014567
Actinomycetota
Mycobacterium leprae Kyoto-2 [AP014567]
12194
12268
+
Ile
GAT
-
¡û
>C191094603
CP032788
Actinomycetota
Corynebacterium xerosis GS 1 [CP032788]
2059909
2059833
-
Ile
GAT
-
¡û
>C191111876
CP033784
Actinomycetota
Corynebacterium jeikeium FDAARGOS_574 [CP033784]
57939
58013
+
Ile
GAT
-
¡û
>W09114660
ABZU01000017
Actinomycetota
Corynebacterium amycolatum SK46 [ABZU]
235
159
-
Ile
GAT
[ENA]
¡û
>W141758721
JNYU01000953
Actinomycetota
Umezawaea tangerina [JNYU]
2671
2595
-
Ile
GAT
[ENA]
¡û
>C09103357
CP001620
Actinomycetota
Corynebacterium kroppenstedtii DSM 44385 [CP001620]
26430
26354
-
Ile
GAT
[Ensembl]
¡û
>C09107686
FM211192
Actinomycetota
Mycobacterium leprae Br4923 [FM211192]
12194
12270
+
Ile
GAT
[Ensembl]
¡û
>W1911596517
PNHF01000021
Actinomycetota
Corynebacterium xerosis UMB0908 [PNHF]
16658
16582
-
Ile
GAT
[ENA]
¡û
>W1911596612
PNHH01000010
Actinomycetota
Corynebacterium kroppenstedtii UMB0869 [PNHH]
372
296
-
Ile
GAT
[ENA]
¡û
>W1810187618
PKHS01000006
Actinomycetota
Corynebacterium amycolatum UMB0042 [PKHS]
63286
63360
+
Ile
GAT
[ENA]
¡û
>W1810187677
PKHT01000017
Actinomycetota
Corynebacterium amycolatum UMB0338 [PKHT]
13739
13665
-
Ile
GAT
[ENA]
¡û
>W1810364395
PVTF01000001
Actinomycetota
Umezawaea tangerina DSM 44720 [PVTF]
178130
178204
+
Ile
GAT
[ENA]
¡û
>C151013216
CP006841
Actinomycetota
Corynebacterium lactis RW2-5 [CP006841]
13730
13804
+
Ile
GAT
-
¡û
>C151039850
CP008913
Actinomycetota
Corynebacterium sp. ATCC 6931 [CP008913]
1230946
1231020
+
Ile
GAT
[Ensembl]
¡û
>W10106899
ACYW01000075
Actinomycetota
Corynebacterium jeikeium ATCC 43734 [ACYW]
57697
57773
+
Ile
GAT
[ENA]
¡û
>W1511442774
JUSD01000039
Actinomycetota
Corynebacterium sp. 805_CJEI 805_CJEI [JUSD]
16290
16216
-
Ile
GAT
[ENA]
¡û
>W1511457793
JVIP01000013
Actinomycetota
Corynebacterium sp. 401_CJEI 401_CJEI [JVIP]
63258
63332
+
Ile
GAT
[ENA]
¡û
>W1511461054
JVMD01000012
Actinomycetota
Corynebacterium halotolerans 307_CHAL [JVMD]
18423
18347
-
Ile
GAT
[ENA]
¡û
>W1511463585
JVOW01000005
Actinomycetota
Corynebacterium sp. 239_CJEI 239_CJEI [JVOW]
63459
63533
+
Ile
GAT
[ENA]
¡û
>W1511464293
JVPT01000010
Actinomycetota
Corynebacterium sp. 212_CJEI 212_CJEI [JVPT]
343
269
-
Ile
GAT
[ENA]
¡û
>W1511469466
JVVM01000021
Actinomycetota
Corynebacterium vitaeruminis 1285_CVIT [JVVM]
411
335
-
Ile
GAT
[ENA]
¡û
>W1511476403
JWEP01000009
Actinomycetota
Corynebacterium urealyticum 1055_CURE [JWEP]
313
239
-
Ile
GAT
[ENA]
¡û
>W1511523844
JYCR01000012
Actinomycetota
Corynebacterium kroppenstedtii ITA105 [JYCR]
83942
84018
+
Ile
GAT
[ENA]
¡û
>W1511523966
JYDD01000007
Actinomycetota
Corynebacterium kroppenstedtii ITA205 [JYDD]
18761
18837
+
Ile
GAT
[ENA]
¡û
>W1511585646
LAYS01000087
Actinomycetota
Corynebacterium xerosis ATCC 373 [LAYS]
8253
8177
-
Ile
GAT
[ENA]
¡û
>W1610068224
BCRD01000009
Actinomycetota
Corynebacterium xerosis NBRC 16721 [BCRD]
31245
31321
+
Ile
GAT
[ENA]
¡û
>W1610069060
BCRU01000017
Actinomycetota
Smaragdicoccus niigatensis DSM 44881 = NBRC 103563 [BCRU]
108002
108076
+
Ile
GAT
[ENA]
¡û
>W1610907147
LSCY01000013
Actinomycetota
Corynebacterium kroppenstedtii [LSCY]
48967
49043
+
Ile
GAT
[ENA]
¡û
>W1610978159
LVXE01000010
Actinomycetota
Mycobacterium leprae 7935681 [LVXE]
32380
32456
+
Ile
GAT
[ENA]
¡û
>W1611017537
LYPH01000099
Actinomycetota
Mycobacterium leprae 3125609 [LYPH]
27151
27075
-
Ile
GAT
[ENA]
¡û
>W1710065597
BCRD01000009
Actinomycetota
Corynebacterium xerosis NBRC 16721 [BCRD]
31245
31321
+
Ile
GAT
[ENA]
¡û
>W1710066433
BCRU01000017
Actinomycetota
Smaragdicoccus niigatensis DSM 44881 = NBRC 103563 [BCRU]
108002
108076
+
Ile
GAT
[ENA]
¡û
>W1710513213
FMZZ01000004
Actinomycetota
Actinokineospora iranica iranicum [FMZZ]
313910
313836
-
Ile
GAT
[ENA]
¡û
>W1710518180
FNDV01000015
Actinomycetota
Actinokineospora alba album [FNDV]
16976
17052
+
Ile
GAT
[ENA]
¡û
>W1710524895
FNJB01000019
Actinomycetota
Actinokineospora alba album [FNJB]
89038
88962
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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