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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148478 (37 seq.)
>W1711095174
LTGO01000054
Actinomycetota
Corynebacterium sp. HMSC067D03 [LTGO]
65525
65451
-
Arg
CCG
[ENA]
¡û
>W1711096599
LTHX01000029
Actinomycetota
Corynebacterium sp. HMSC055D05 [LTHX]
67312
67238
-
Arg
CCG
[ENA]
¡û
>W1711103657
LTOW01000082
Actinomycetota
Corynebacterium sp. HMSC070H05 [LTOW]
67701
67627
-
Arg
CCG
[ENA]
¡û
>W1711105942
LTRH01000064
Actinomycetota
Corynebacterium sp. HMSC036E10 [LTRH]
892
816
-
Arg
CCG
[ENA]
¡û
>W1711106576
LTRY01000077
Actinomycetota
Corynebacterium sp. HMSC034E11 [LTRY]
112
38
-
Arg
CCG
[ENA]
¡û
>W1711106682
LTSB01000081
Actinomycetota
Corynebacterium sp. HMSC034B08 [LTSB]
32129
32203
+
Arg
CCG
[ENA]
¡û
>W1711107230
LTSO01000117
Actinomycetota
Corynebacterium sp. HMSC075D04 [LTSO]
29483
29557
+
Arg
CCG
[ENA]
¡û
>W1711114758
LTZO01000071
Actinomycetota
Corynebacterium sp. HMSC11D10 [LTZO]
111
37
-
Arg
CCG
[ENA]
¡û
>W131165363
ARBM01000005
Actinomycetota
Corynebacterium caspium DSM 44850 [ARBM]
138878
138952
+
Arg
CCG
[ENA]
¡û
>W1711185866
LWNT01000036
Actinomycetota
Corynebacterium sp. HMSC08F01 [LWNT]
67684
67610
-
Arg
CCG
[ENA]
¡û
>W1711186763
LWOM01000028
Actinomycetota
Corynebacterium sp. HMSC05C01 [LWOM]
69197
69123
-
Arg
CCG
[ENA]
¡û
>W141259179
CBYN010000089
Actinomycetota
Corynebacterium jeddahense JCB [CBYN]
11090
11166
+
Arg
CCG
[ENA]
¡û
>WENV182629231
OJKR01047391
[OJKR] metagenome; surface
54
130
+
Arg
CCG
[ENA]
¢þ
>WENV182636073
OJKZ01000204
[OJKZ] metagenome; surface
25592
25668
+
Arg
CCG
[ENA]
¢þ
>WENV182641817
OJLK01001669
[OJLK] metagenome; surface
806
732
-
Arg
CCG
[ENA]
¢þ
>WENV182643616
OJLW01000235
[OJLW] metagenome; surface
678
602
-
Arg
CCG
[ENA]
¢þ
>WENV182644817
OJLY01000446
[OJLY] metagenome; surface
25120
25196
+
Arg
CCG
[ENA]
¢þ
>WENV182645935
OJLZ01011497
[OJLZ] metagenome; surface
894
970
+
Arg
CCG
[ENA]
¢þ
>WENV182671613
OJNM01000519
[OJNM] metagenome; surface
3056
2980
-
Arg
CCG
[ENA]
¢þ
>C181039053
CP019688
Actinomycetota
Corynebacterium glaucum DSM 30827 [CP019688]
1045138
1045062
-
Arg
CCG
-
¡û
>C181211287
LS483404
Actinomycetota
Corynebacterium renale NCTC11140 [LS483404]
1288220
1288146
-
Arg
CCG
-
¡û
>C181215128
LS483464
Actinomycetota
Corynebacterium renale NCTC7448 [LS483464]
1757626
1757552
-
Arg
CCG
-
¡û
>W141563976
JIAJ01000008
Actinomycetota
Corynebacterium halotolerans YIM 70093 = DSM 44683 [JIAJ]
14523
14449
-
Arg
CCG
[ENA]
¡û
>W1911596570
PNHG01000023
Actinomycetota
Corynebacterium tuscaniense UMB0792 [PNHG]
809
735
-
Arg
CCG
[ENA]
¡û
>W1810058131
PDJF01000001
Actinomycetota
Corynebacterium renale DSM 20688 [PDJF]
2166210
2166284
+
Arg
CCG
[ENA]
¡û
>W1810187373
PKHN01000009
Actinomycetota
Corynebacterium riegelii UMB0243 [PKHN]
10478
10404
-
Arg
CCG
[ENA]
¡û
>W1810187459
PKHP01000006
Actinomycetota
Corynebacterium coyleae UMB0989 [PKHP]
115387
115313
-
Arg
CCG
[ENA]
¡û
>W1810187485
PKHQ01000001
Actinomycetota
Corynebacterium coyleae UMB0147 [PKHQ]
175436
175510
+
Arg
CCG
[ENA]
¡û
>C151045612
CP009215
Actinomycetota
Corynebacterium ureicelerivorans IMMIB RIV-2301 [CP009215]
954006
953929
-
Arg
CCG
[Ensembl]
¡û
>C151084418
CP011542
Actinomycetota
Corynebacterium mustelae DSM 45274 [CP011542]
1311657
1311583
-
Arg
CCG
[Ensembl]
¡û
>W1511644891
LDYE01000007
Actinomycetota
Corynebacterium renale CIP 52.96 [LDYE]
243586
243512
-
Arg
CCG
[ENA]
¡û
>C161041038
CP012342
Actinomycetota
Corynebacterium riegelii PUDD_83A45 [CP012342]
983237
983313
+
Arg
CCG
[Ensembl]
¡û
>C131005417
CP003697
Actinomycetota
Corynebacterium halotolerans YIM 70093 = DSM 44683 [CP003697]
1293825
1293751
-
Arg
CCG
[Ensembl]
¡û
>W1610436814
FJVG01000020
Actinomycetota
Corynebacterium bouchesdurhonense SN14 [FJVG]
236792
236866
+
Arg
CCG
[ENA]
¡û
>W1710436550
FJVG01000020
Actinomycetota
Corynebacterium bouchesdurhonense SN14 [FJVG]
236792
236866
+
Arg
CCG
[ENA]
¡û
>W1710534346
FNRU01000002
Actinomycetota
Corynebacterium coyleae [FNRU]
2115496
2115420
-
Arg
CCG
[ENA]
¡û
>W1710563028
FOPJ01000005
Actinomycetota
Corynebacterium spheniscorum [FOPJ]
183961
184035
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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