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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148486 (89 seq.)
>W131010905
AHYV01000034
Bacillota
Enterococcus avium ATCC 14025 [AHYV]
524
451
-
Arg
ACG
[ENA]
¡û
>W131027530
AJAK01000016
Bacillota
Enterococcus malodoratus ATCC 43197 [AJAK]
523
450
-
Arg
ACG
[ENA]
¡û
>W131027542
AJAK01000017
Bacillota
Enterococcus malodoratus ATCC 43197 [AJAK]
321471
321398
-
Arg
ACG
[ENA]
¡û
>W131027586
AJAL01000010
Bacillota
Enterococcus raffinosus ATCC 49464 [AJAL]
337485
337558
+
Arg
ACG
[ENA]
¡û
>W131031963
AJDQ01000006
Bacillota
Enterococcus gilvus ATCC BAA-350 [AJDQ]
236966
237039
+
Arg
ACG
[ENA]
¡û
>W1711108406
LTTS01000114
Bacillota
Enterococcus sp. HMSC066C04 [LTTS]
47
120
+
Arg
ACG
[ENA]
¡û
>W1711114887
LTZR01000076
Bacillota
Enterococcus sp. HMSC14A10 [LTZR]
47
120
+
Arg
ACG
[ENA]
¡û
>W1711186743
LWOL01000209
Bacillota
Enterococcus sp. HMSC05C03 [LWOL]
461
388
-
Arg
ACG
[ENA]
¡û
>W1711187035
LWOS01000119
Bacillota
Enterococcus sp. HMSC29A04 [LWOS]
45
118
+
Arg
ACG
[ENA]
¡û
>W131201341
ASWA01000004
Bacillota
Enterococcus malodoratus ATCC 43197 [ASWA]
683
756
+
Arg
ACG
[ENA]
¡û
>W131201372
ASWA01000005
Bacillota
Enterococcus malodoratus ATCC 43197 [ASWA]
683
756
+
Arg
ACG
[ENA]
¡û
>W131201644
ASWF01000003
Bacillota
Enterococcus raffinosus ATCC 49464 [ASWF]
12864
12937
+
Arg
ACG
[ENA]
¡û
>W131201777
ASWH01000001
Bacillota
Enterococcus gilvus ATCC BAA-350 [ASWH]
3027938
3027865
-
Arg
ACG
[ENA]
¡û
>W131201786
ASWH01000001
Bacillota
Enterococcus gilvus ATCC BAA-350 [ASWH]
2748876
2748803
-
Arg
ACG
[ENA]
¡û
>W1712067845
NGLG01000001
Bacillota
Enterococcus sp. 3H8_DIV0648 [NGLG]
2399457
2399384
-
Arg
ACG
[ENA]
¡û
>W1712068822
NGLY01000001
Bacillota
Enterococcus sp. 12E11_DIV0728 [NGLY]
2434
2507
+
Arg
ACG
[ENA]
¡û
>W1712068874
NGLY01000006
Bacillota
Enterococcus sp. 12E11_DIV0728 [NGLY]
2434
2507
+
Arg
ACG
[ENA]
¡û
>W1712096880
NIBK01000001
Bacillota
Enterococcus sp. 12F9_DIV0723 [NIBK]
2784761
2784688
-
Arg
ACG
[ENA]
¡û
>W1712096919
NIBK01000003
Bacillota
Enterococcus sp. 12F9_DIV0723 [NIBK]
1279
1352
+
Arg
ACG
[ENA]
¡û
>WENV180102886
OAOZ01042782
[OAOZ] marine metagenome; ENVO:00002010
79
155
+
Arg
ACG
[ENA]
¢þ
>WENV180163434
OAVH01014687
[OAVH] human gut metagenome; faeces
591
664
+
Arg
ACG
[ENA]
¢þ
>WENV180406808
OBUQ01000084
[OBUQ] human gut metagenome; faeces
68
141
+
Arg
ACG
[ENA]
¢þ
>WENV180442250
OBWW01023498
[OBWW] human gut metagenome; faeces
531
604
+
Arg
ACG
[ENA]
¢þ
>W08004220
ABHH01000037
Bacillota
Carnobacterium sp. AT7 [ABHH]
16667
16592
-
Arg
ACG
[ENA]
¡û
>W08004248
ABHH01000043
Bacillota
Carnobacterium sp. AT7 [ABHH]
7197
7122
-
Arg
ACG
[ENA]
¡û
>WENV182401631
OIER01004446
[OIER] human gut metagenome; human gut
2906
2833
-
Arg
ACG
[ENA]
¢þ
>WENV182800758
OJUF01005030
[OJUF] human gut metagenome; human gut
234
161
-
Arg
ACG
[ENA]
¢þ
>WENV182803488
OJUL01001106
[OJUL] human gut metagenome; human gut
3709
3636
-
Arg
ACG
[ENA]
¢þ
>WENV182807774
OJVZ01000002
[OJVZ] human gut metagenome; human gut
5030
5103
+
Arg
ACG
[ENA]
¢þ
>WENV182823255
OKBS01001547
[OKBS] human gut metagenome; human gut
592
665
+
Arg
ACG
[ENA]
¢þ
>WENV182828059
OKDE01006977
[OKDE] human gut metagenome; human gut
708
781
+
Arg
ACG
[ENA]
¢þ
>WENV182950249
OKVR01001437
[OKVR] human gut metagenome; human gut
1055
1128
+
Arg
ACG
[ENA]
¢þ
>WENV182963194
OKWP01001080
[OKWP] human gut metagenome; stool
1895
1822
-
Arg
ACG
[ENA]
¢þ
>W141426015
JEMH01000011
Bacillota
Carnobacterium jeotgali [JEMH]
7718
7643
-
Arg
ACG
[ENA]
¡û
>W141426050
JEMH01000028
Bacillota
Carnobacterium jeotgali [JEMH]
219
294
+
Arg
ACG
[ENA]
¡û
>WENV170540013
CWGS01000267
[CWGS] human gut metagenome; ENVO:feces
43
116
+
Arg
ACG
[ENA]
¢þ
>WENV170540571
CWHE01000180
[CWHE] human gut metagenome; ENVO:feces
43
116
+
Arg
ACG
[ENA]
¢þ
>WENV170541367
CXPN01001238
[CXPN] human gut metagenome genome assembly hA5, contig hA5_contig005349.; ENVO:feces
825
752
-
Arg
ACG
[ENA]
¢þ
>WENV170541693
CXPR01003178
[CXPR] human gut metagenome genome assembly hA9, contig hA9_contig006182.; ENVO:feces
334
407
+
Arg
ACG
[ENA]
¢þ
>WENV170542919
CXQK01003153
[CXQK] human gut metagenome genome assembly hC5, contig hC5_contig005179.; ENVO:feces
5833
5906
+
Arg
ACG
[ENA]
¢þ
>WENV170545310
CXRY01001710
[CXRY] human gut metagenome genome assembly hG10, contig; ENVO:feces
122
195
+
Arg
ACG
[ENA]
¢þ
>WENV170545817
CXSI01001209
[CXSI] human gut metagenome genome assembly hG6, contig hG6_contig004768.; ENVO:feces
77
150
+
Arg
ACG
[ENA]
¢þ
>WENV170700260
LIDZ01009968
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
5735
5660
-
Arg
ACG
[ENA]
¢þ
>C181194567
CP030932
Bacillota
Enterococcus gilvus CR1 [CP030932]
2511246
2511173
-
Arg
ACG
-
¡û
>C181194576
CP030932
Bacillota
Enterococcus gilvus CR1 [CP030932]
2220424
2220351
-
Arg
ACG
-
¡û
>C191120797
CP034169
Bacillota
Enterococcus avium 352 [CP034169]
4378009
4377936
-
Arg
ACG
-
¡û
>W141815473
JQIV01000006
Bacillota
Carnobacterium inhibens DSM 13024 [JQIV]
1914252
1914327
+
Arg
ACG
[ENA]
¡û
>W141815490
JQIV01000006
Bacillota
Carnobacterium inhibens DSM 13024 [JQIV]
2261389
2261464
+
Arg
ACG
[ENA]
¡û
>W141818062
JQLG01000004
Bacillota
Carnobacterium alterfunditum DSM 5972 [JQLG]
1270472
1270545
+
Arg
ACG
[ENA]
¡û
>W141818079
JQLG01000004
Bacillota
Carnobacterium alterfunditum DSM 5972 [JQLG]
1619226
1619299
+
Arg
ACG
[ENA]
¡û
>W141818669
JQLQ01000002
Bacillota
Carnobacterium pleistocenium FTR1 [JQLQ]
2443405
2443330
-
Arg
ACG
[ENA]
¡û
>W141818686
JQLQ01000002
Bacillota
Carnobacterium pleistocenium FTR1 [JQLQ]
2104611
2104536
-
Arg
ACG
[ENA]
¡û
>W141820950
JQNF01000007
Bacillota
Carnobacterium jeotgali MS3 [JQNF]
57169
57094
-
Arg
ACG
[ENA]
¡û
>W141820978
JQNF01000010
Bacillota
Carnobacterium jeotgali MS3 [JQNF]
849109
849184
+
Arg
ACG
[ENA]
¡û
>W141820991
JQNG01000002
Bacillota
Carnobacterium sp. WN1374 [JQNG]
901502
901577
+
Arg
ACG
[ENA]
¡û
>W141821008
JQNG01000002
Bacillota
Carnobacterium sp. WN1374 [JQNG]
1219953
1220028
+
Arg
ACG
[ENA]
¡û
>W1910177251
BJDP01000010
Bacillota
Enterococcus pingfangensis 241-2-2 [BJDP]
532
605
+
Arg
ACG
[ENA]
¡û
>W1910177254
BJDP01000013
Bacillota
Enterococcus pingfangensis 241-2-2 [BJDP]
3
76
+
Arg
ACG
[ENA]
¡û
>W1910177301
BJDQ01000008
Bacillota
Enterococcus dongliensis Apr-63 [BJDQ]
95154
95081
-
Arg
ACG
[ENA]
¡û
>W1910177329
BJDQ01000017
Bacillota
Enterococcus dongliensis Apr-63 [BJDQ]
24810
24737
-
Arg
ACG
[ENA]
¡û
>W1910177627
BJDW01000028
Bacillota
Enterococcus viikkiensis LMG 26075 [BJDW]
31084
31011
-
Arg
ACG
[ENA]
¡û
>W1910177646
BJDX01000006
Bacillota
Enterococcus xiangfangensis 11097 [BJDX]
614
687
+
Arg
ACG
[ENA]
¡û
>W1910177948
BJED01000011
Bacillota
Enterococcus hulanensis 190-7 [BJED]
141765
141692
-
Arg
ACG
[ENA]
¡û
>C141008719
CP006812
Bacillota
Carnobacterium inhibens subsp. gilichinskyi WN1359 [CP006812]
149236
149311
+
Arg
ACG
[Ensembl]
¡û
>C141008736
CP006812
Bacillota
Carnobacterium inhibens subsp. gilichinskyi WN1359 [CP006812]
467624
467699
+
Arg
ACG
[Ensembl]
¡û
>W1911084041
NNBZ01000001
Bacillota
Enterococcus pseudoavium CBA7133 [NNBZ]
2020122
2020049
-
Arg
ACG
[ENA]
¡û
>W1911084049
NNBZ01000001
Bacillota
Enterococcus pseudoavium CBA7133 [NNBZ]
1813360
1813287
-
Arg
ACG
[ENA]
¡û
>W1911084094
NNBZ01000011
Bacillota
Enterococcus pseudoavium CBA7133 [NNBZ]
4350
4423
+
Arg
ACG
[ENA]
¡û
>W1810045358
NBSL01000002
Bacillota
Enterococcus avium FDAARGOS_182 [NBSL]
3028369
3028442
+
Arg
ACG
[ENA]
¡û
>W1810045422
NBSM01000001
Bacillota
Enterococcus avium FDAARGOS_180 [NBSM]
2408157
2408230
+
Arg
ACG
[ENA]
¡û
>W1810817942
QSCV01000114
Bacillota
Enterococcus avium OF02-3AC [QSCV]
66
139
+
Arg
ACG
[ENA]
¡û
>C11104753
CP002563
Bacillota
Carnobacterium sp. 17-4 [CP002563]
225902
225977
+
Arg
ACG
[Ensembl]
¡û
>C11104770
CP002563
Bacillota
Carnobacterium sp. 17-4 [CP002563]
557330
557405
+
Arg
ACG
[Ensembl]
¡û
>W1610021473
ATKJ02000146
Bacillota
Enterococcus raffinosus cftri2200 [ATKJ]
428
355
-
Arg
ACG
[ENA]
¡û
>W1610066540
BCPU01000139
Bacillota
Enterococcus raffinosus NBRC 100492 [BCPU]
14
87
+
Arg
ACG
[ENA]
¡û
>W1610067019
BCQF01000055
Bacillota
Enterococcus pseudoavium NBRC 100491 [BCQF]
74
1
-
Arg
ACG
[ENA]
¡û
>W1610462455
FKLT01000091
Bacillota
Enterococcus faecium [FKLT]
2370
2443
+
Arg
ACG
[ENA]
¡û
>W1710018168
ATKJ02000146
Bacillota
Enterococcus raffinosus cftri2200 [ATKJ]
428
355
-
Arg
ACG
[ENA]
¡û
>W1710063878
BCPU01000139
Bacillota
Enterococcus raffinosus NBRC 100492 [BCPU]
14
87
+
Arg
ACG
[ENA]
¡û
>W1710064450
BCQF01000055
Bacillota
Enterococcus pseudoavium NBRC 100491 [BCQF]
74
1
-
Arg
ACG
[ENA]
¡û
>W1710461625
FKLT01000091
Bacillota
Enterococcus faecium [FKLT]
2370
2443
+
Arg
ACG
[ENA]
¡û
>W1710553520
FOHR01000009
Bacillota
Enterococcus malodoratus kppr-6 [FOHR]
159125
159052
-
Arg
ACG
[ENA]
¡û
>W1710594860
FSRN01000001
Bacillota
Carnobacterium alterfunditum [FSRN]
613031
613104
+
Arg
ACG
[ENA]
¡û
>W1710594877
FSRN01000001
Bacillota
Carnobacterium alterfunditum [FSRN]
961785
961858
+
Arg
ACG
[ENA]
¡û
>W1710659299
JXKM01000063
Bacillota
Enterococcus devriesei [JXKM]
75
2
-
Arg
ACG
[ENA]
¡û
>W1710659383
JXKO01000087
Bacillota
Enterococcus gilvus [JXKO]
291
364
+
Arg
ACG
[ENA]
¡û
>W1710659437
JXKQ01000006
Bacillota
Enterococcus hermanniensis [JXKQ]
448
521
+
Arg
ACG
[ENA]
¡û
>W1710659565
JXKU01000005
Bacillota
Enterococcus malodoratus [JXKU]
163447
163374
-
Arg
ACG
[ENA]
¡û
>W1710659788
JXLA01000126
Bacillota
Enterococcus raffinosus [JXLA]
42
115
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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