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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148501 (59 seq.)
>W1710934478
LOJI01000035
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
142200
142124
-
Arg
TCT
[ENA]
¡û
>W1710934500
LOJJ01000003
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
163362
163438
+
Arg
TCT
[ENA]
¡û
>W1711147357
LVJO01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVJO]
1006037
1005961
-
Arg
TCT
[ENA]
¡û
>W1711149066
LVLD01000007
Betaproteobacteria
Polynucleobacter asymbioticus P1-KOL8 [LVLD]
653074
652998
-
Arg
TCT
[ENA]
¡û
>W1711149102
LVLE01000005
Betaproteobacteria
Polynucleobacter asymbioticus [LVLE]
687295
687219
-
Arg
TCT
[ENA]
¡û
>W1711149139
LVLF01000005
Betaproteobacteria
Polynucleobacter asymbioticus [LVLF]
443564
443488
-
Arg
TCT
[ENA]
¡û
>W1711149176
LVLG01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLG]
1136931
1136855
-
Arg
TCT
[ENA]
¡û
>W1711272430
LZFI01000002
Betaproteobacteria
Polynucleobacter sp. MWH-Adler-W8 [LZFI]
404589
404513
-
Arg
TCT
[ENA]
¡û
>W1711281997
LZMQ01000003
Betaproteobacteria
Polynucleobacter sp. QLW-P1DATA-2 [LZMQ]
522970
522894
-
Arg
TCT
[ENA]
¡û
>W1711282043
LZMR01000004
Betaproteobacteria
Polynucleobacter sp. MWH-Tro8-2-5-gr [LZMR]
545464
545388
-
Arg
TCT
[ENA]
¡û
>W1711421595
MHZG01000002
Betaproteobacteria
Polynucleobacter sp. GWA2_45_21 [MHZG]
305068
305144
+
Arg
TCT
[ENA]
¡û
>W1711625765
MPIY01000001
Betaproteobacteria
Polynucleobacter sphagniphilus MWH-Weng1-1 [MPIY]
414356
414432
+
Arg
TCT
[ENA]
¡û
>W1711932816
NAIA01000003
Betaproteobacteria
Polynucleobacter hirudinilacicola MWH-EgelM1-30-B4 [NAIA]
856291
856215
-
Arg
TCT
[ENA]
¡û
>W1712077023
NGUO01000008
Betaproteobacteria
Polynucleobacter aenigmaticus MWH-K35W1 [NGUO]
33900
33976
+
Arg
TCT
[ENA]
¡û
>W1712077068
NGUP01000003
Betaproteobacteria
Polynucleobacter campilacus MWH-Feld-100 [NGUP]
5476
5400
-
Arg
TCT
[ENA]
¡û
>C171035131
CP015016
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKolB [CP015016]
1161813
1161737
-
Arg
TCT
-
¡û
>C171035169
CP015017
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKol4 [CP015017]
1180646
1180570
-
Arg
TCT
-
¡û
>C171035207
CP015018
Betaproteobacteria
Polynucleobacter asymbioticus Tro8F10W22 [CP015018]
1096642
1096566
-
Arg
TCT
-
¡û
>W131220820
ATZV01000064
Betaproteobacteria
beta proteobacterium SCGC AAA027-C02 [ATZV]
39262
39338
+
Arg
TCT
[ENA]
¡û
>C017398
CP000655
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [CP000655]
1006037
1005961
-
Arg
TCT
[Ensembl]
¡û
>WENV180111473
OAPN01089277
[OAPN] marine metagenome; 2011
268
344
+
Arg
TCT
[ENA]
¢þ
>WENV180377736
OBON01105564
[OBON] marine metagenome; sea water
268
344
+
Arg
TCT
[ENA]
¢þ
>WENV180391106
OBPM01010274
[OBPM] marine metagenome; ENVO:00002010
596
672
+
Arg
TCT
[ENA]
¢þ
>WENV181368325
OFQL01000719
[OFQL] freshwater metagenome; Freshwater Lake
2693
2769
+
Arg
TCT
[ENA]
¢þ
>WENV181368814
OFQN01000812
[OFQN] freshwater metagenome; Freshwater Lake
147
71
-
Arg
TCT
[ENA]
¢þ
>WENV181369272
OFQP01000059
[OFQP] freshwater metagenome; Freshwater Lake
186
110
-
Arg
TCT
[ENA]
¢þ
>WENV181370237
OFQS01000985
[OFQS] freshwater metagenome; Freshwater Lake
607
531
-
Arg
TCT
[ENA]
¢þ
>WENV181370588
OFQT01000501
[OFQT] freshwater metagenome; Freshwater Lake
141
65
-
Arg
TCT
[ENA]
¢þ
>WENV181384945
OFRI01021443
[OFRI] wastewater metagenome; Exp Tend VB 90WW
852
928
+
Arg
TCT
[ENA]
¢þ
>WENV181395689
OFSB01000341
[OFSB] freshwater metagenome; Freshwater Lake
6252
6328
+
Arg
TCT
[ENA]
¢þ
>WENV181835683
OGVI01009711
[OGVI] freshwater metagenome; freshwater
612
536
-
Arg
TCT
[ENA]
¢þ
>WENV181838403
OGVN01000158
[OGVN] freshwater metagenome; freshwater
1591
1515
-
Arg
TCT
[ENA]
¢þ
>WENV181838983
OGVN01046180
[OGVN] freshwater metagenome; freshwater
472
548
+
Arg
TCT
[ENA]
¢þ
>WENV181850911
OGWE01002323
[OGWE] freshwater metagenome; freshwater
693
617
-
Arg
TCT
[ENA]
¢þ
>WENV181856998
OGWN01037475
[OGWN] freshwater metagenome; freshwater
160
236
+
Arg
TCT
[ENA]
¢þ
>WENV181857373
OGWO01002692
[OGWO] freshwater metagenome; freshwater
1823
1747
-
Arg
TCT
[ENA]
¢þ
>C08007620
CP001010
Betaproteobacteria
Polynucleobacter necessarius [CP001010]
741784
741860
+
Arg
TCT
[Ensembl]
¡û
>WENV170599731
FUWD010088955
[FUWD] metagenome; unknown
533
457
-
Arg
TCT
[ENA]
¢þ
>WENV170609360
FUWD011381853
[FUWD] metagenome; unknown
242
318
+
Arg
TCT
[ENA]
¢þ
>WENV170617407
FUWD012925174
[FUWD] metagenome; unknown
366
290
-
Arg
TCT
[ENA]
¢þ
>WENV170617409
FUWD012925175
[FUWD] metagenome; unknown
80
4
-
Arg
TCT
[ENA]
¢þ
>C181187693
CP030086
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-Creno-4B4 [CP030086]
930587
930511
-
Arg
TCT
-
¡û
>C181218871
LT606946
Betaproteobacteria
Polynucleobacter necessarius [LT606946]
740474
740550
+
Arg
TCT
-
¡û
>C181218906
LT606947
Betaproteobacteria
Polynucleobacter necessarius [LT606947]
464839
464915
+
Arg
TCT
-
¡û
>C181218965
LT606949
Betaproteobacteria
Polynucleobacter necessarius [LT606949]
855598
855522
-
Arg
TCT
-
¡û
>C181219068
LT615227
Betaproteobacteria
Polynucleobacter necessarius [LT615227]
1547485
1547409
-
Arg
TCT
-
¡û
>W09106285
AAUC01000004
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [AAUC]
135045
134969
-
Arg
TCT
[ENA]
¡û
>W09107515
ABJA01000001
Betaproteobacteria
Polynucleobacter necessarius STIR1 [ABJA]
851764
851688
-
Arg
TCT
[ENA]
¡û
>C141003794
CP004348
Betaproteobacteria
beta proteobacterium CB [CP004348]
803843
803919
+
Arg
TCT
[Ensembl]
¡û
>W1910942187
NJGG01000002
Betaproteobacteria
Polynucleobacter cosmopolitanus MWH-MoIso2 [NJGG]
295926
295850
-
Arg
TCT
[ENA]
¡û
>W1911490763
OANS01000005
Betaproteobacteria
Polynucleobacter meluiroseus AP-Melu-1000-B4 [OANS]
133711
133787
+
Arg
TCT
[ENA]
¡û
>W1810102017
PGTX01000005
Betaproteobacteria
Polynucleobacter brandtiae UB-Domo-W1 [PGTX]
1359
1283
-
Arg
TCT
[ENA]
¡û
>W1810699150
QMCG01000001
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-UK1W16 [QMCG]
1374168
1374092
-
Arg
TCT
[ENA]
¡û
>W1810699197
QMCH01000003
Betaproteobacteria
Polynucleobacter paneuropaeus FUKU-NW-11 [QMCH]
637498
637422
-
Arg
TCT
[ENA]
¡û
>C151025648
CP007501
Betaproteobacteria
Polynucleobacter duraquae MWH-MoK4 [CP007501]
809393
809469
+
Arg
TCT
[Ensembl]
¡û
>C161092377
CP015922
Betaproteobacteria
Polynucleobacter wuianus QLW-P1FAT50C-4 [CP015922]
966135
966211
+
Arg
TCT
[Ensembl]
¡û
>W1610792009
LOJI01000035
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
142200
142124
-
Arg
TCT
[ENA]
¡û
>W1610792031
LOJJ01000003
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
163362
163438
+
Arg
TCT
[ENA]
¡û
>W1710610217
FYEX01000002
Betaproteobacteria
Polynucleobacter victoriensis MWH-VicM1 [FYEX]
259753
259677
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK