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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148583 (18 seq.)
>W131104571
APCS01000026
Deinococcota
Deinococcus wulumuqiensis R12 [APCS]
418
336
-
Leu
CAA
[ENA]
¡û
>C007941
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
1317108
1317190
+
Leu
CAA
[Ensembl]
¡û
>WENV180232143
OBCO01000138
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
13551
13633
+
Leu
CAA
[ENA]
¢þ
>WENV180233120
OBCP01000133
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
13551
13633
+
Leu
CAA
[ENA]
¢þ
>WENV180569661
OCLR01000283
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
13551
13633
+
Leu
CAA
[ENA]
¢þ
>WENV180570793
OCLS01000582
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
13551
13633
+
Leu
CAA
[ENA]
¢þ
>WENV180571496
OCLT01000137
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
13551
13633
+
Leu
CAA
[ENA]
¢þ
>WENV180573740
OCLW01000136
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
13551
13633
+
Leu
CAA
[ENA]
¢þ
>WENV180639804
OCRL01000139
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
13551
13633
+
Leu
CAA
[ENA]
¢þ
>WENV180640729
OCRM01000135
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
13551
13633
+
Leu
CAA
[ENA]
¢þ
>W141154782
AXLL01000104
Deinococcota
Deinococcus wulumuqiensis R13 [AXLL]
9597
9679
+
Leu
CAA
[ENA]
¡û
>C181196484
CP031158
Deinococcota
Deinococcus wulumuqiensis NEB 479 [CP031158]
953521
953439
-
Leu
CAA
-
¡û
>W141561470
JHYL01000008
Deinococcota
Deinococcus radiodurans ATCC 13939 [JHYL]
13843
13925
+
Leu
CAA
[ENA]
¡û
>W141702062
JMLF01000006
Deinococcota
Deinococcus radiodurans DSM 20539 [JMLF]
13843
13925
+
Leu
CAA
[ENA]
¡û
>W1810671611
QJSX01000009
Deinococcota
Deinococcus yavapaiensis KR-236 DSM 18048 [QJSX]
106522
106440
-
Leu
CAA
[ENA]
¡û
>C10105343
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
1317108
1317190
+
Leu
CAA
[Ensembl]
¡û
>C11107270
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
1317108
1317190
+
Leu
CAA
[Ensembl]
¡û
>C161082988
CP015081
Deinococcota
Deinococcus radiodurans R1 [CP015081, CP015082]
1402467
1402385
-
Leu
CAA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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