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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148731 (24 seq.)
>W1711404290
MFYH01000023
Unclassified
Candidatus Peribacteria bacterium RIFOXYA1_FULL_56_14 [MFYH]
109333
109257
-
Lys
CTT
[ENA]
¡û
>W1711404342
MFYI01000014
Unclassified
Candidatus Peribacteria bacterium RIFOXYA2_FULL_55_28 [MFYI]
52431
52507
+
Lys
CTT
[ENA]
¡û
>W1711404376
MFYJ01000007
Unclassified
Candidatus Peribacteria bacterium RIFOXYB1_FULL_54_35 [MFYJ]
152169
152093
-
Lys
CTT
[ENA]
¡û
>W1711404403
MFYK01000004
Unclassified
Candidatus Peribacteria bacterium RIFOXYB1_FULL_57_12 [MFYK]
21377
21453
+
Lys
CTT
[ENA]
¡û
>W1711404461
MFYL01000013
Unclassified
Candidatus Peribacteria bacterium RIFOXYB2_FULL_54_17 [MFYL]
233629
233705
+
Lys
CTT
[ENA]
¡û
>W1711404487
MFYM01000002
Unclassified
Candidatus Peribacteria bacterium RIFOXYC1_FULL_54_13 [MFYM]
6529
6605
+
Lys
CTT
[ENA]
¡û
>W1711404547
MFYN01000039
Unclassified
Candidatus Peribacteria bacterium RIFOXYC1_FULL_58_8 [MFYN]
6840
6916
+
Lys
CTT
[ENA]
¡û
>W1711404571
MFYO01000003
Unclassified
Candidatus Peribacteria bacterium RIFOXYC2_FULL_55_14 [MFYO]
24032
23956
-
Lys
CTT
[ENA]
¡û
>W1711583007
MNWP01000025
Unclassified
Candidatus Peregrinibacteria bacterium CG1_02_54_53 [MNWP]
1722
1646
-
Lys
CTT
[ENA]
¡û
>WENV180249640
OBEQ010216630
[OBEQ] groundwater metagenome; groundwater
34
110
+
Lys
CTT
[ENA]
¢þ
>WENV180267586
OBEQ011870888
[OBEQ] groundwater metagenome; groundwater
114
190
+
Lys
CTT
[ENA]
¢þ
>WENV180271243
OBEQ012251023
[OBEQ] groundwater metagenome; groundwater
388
312
-
Lys
CTT
[ENA]
¢þ
>WENV183663399
ORJL010280204
[ORJL] groundwater metagenome; groundwater
10278
10202
-
Lys
CTT
[ENA]
¢þ
>W1910716965
MFXP01000006
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_01_FULL_51_35 [MFXP]
2317
2241
-
Lys
CTT
[ENA]
¡û
>W1910716999
MFXQ01000023
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_01_FULL_51_9 [MFXQ]
31
107
+
Lys
CTT
[ENA]
¡û
>W1910717148
MFXU01000004
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_02_FULL_51_15 [MFXU]
27056
27132
+
Lys
CTT
[ENA]
¡û
>W1910717408
MFYA01000048
Unclassified
Candidatus Peribacteria bacterium RIFCSPLOWO2_01_FULL_51_18 [MFYA]
16918
16842
-
Lys
CTT
[ENA]
¡û
>W1910717486
MFYD01000007
Unclassified
Candidatus Peribacteria bacterium RIFCSPLOWO2_02_FULL_51_10 [MFYD]
267
191
-
Lys
CTT
[ENA]
¡û
>W1511618915
LCRQ01000072
Unclassified
Candidatus Peribacteria bacterium GW2011_GWB1_54_5 GW2011_GWB1_54_5 [LCRQ]
1710
1634
-
Lys
CTT
[ENA]
¡û
>C161050457
CP013062
Unclassified
Candidatus Peribacter riflensis [CP013062]
635340
635264
-
Lys
CTT
-
¡û
>C161050501
CP013063
Unclassified
Candidatus Peribacter riflensis [CP013063]
635495
635419
-
Lys
CTT
-
¡û
>C161050545
CP013064
Unclassified
Candidatus Peribacter riflensis [CP013064]
635426
635350
-
Lys
CTT
-
¡û
>C161050589
CP013065
Unclassified
Candidatus Peribacter riflensis [CP013065]
635219
635143
-
Lys
CTT
-
¡û
>C161050633
CP013066
Unclassified
Candidatus Peribacter riflensis [CP013066]
635494
635418
-
Lys
CTT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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