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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148738 (19 seq.)
>W1711404303
MFYH01000028
Unclassified
Candidatus Peribacteria bacterium RIFOXYA1_FULL_56_14 [MFYH]
4889
4813
-
Val
CAC
[ENA]
¡û
>W1711404315
MFYI01000001
Unclassified
Candidatus Peribacteria bacterium RIFOXYA2_FULL_55_28 [MFYI]
4931
4855
-
Val
CAC
[ENA]
¡û
>W1711404392
MFYJ01000012
Unclassified
Candidatus Peribacteria bacterium RIFOXYB1_FULL_54_35 [MFYJ]
211232
211308
+
Val
CAC
[ENA]
¡û
>W1711404409
MFYK01000006
Unclassified
Candidatus Peribacteria bacterium RIFOXYB1_FULL_57_12 [MFYK]
83934
84010
+
Val
CAC
[ENA]
¡û
>W1711404482
MFYL01000018
Unclassified
Candidatus Peribacteria bacterium RIFOXYB2_FULL_54_17 [MFYL]
211110
211186
+
Val
CAC
[ENA]
¡û
>W1711404523
MFYM01000022
Unclassified
Candidatus Peribacteria bacterium RIFOXYC1_FULL_54_13 [MFYM]
211110
211186
+
Val
CAC
[ENA]
¡û
>W1711404549
MFYN01000047
Unclassified
Candidatus Peribacteria bacterium RIFOXYC1_FULL_58_8 [MFYN]
27575
27651
+
Val
CAC
[ENA]
¡û
>W1711404593
MFYO01000016
Unclassified
Candidatus Peribacteria bacterium RIFOXYC2_FULL_55_14 [MFYO]
4929
4853
-
Val
CAC
[ENA]
¡û
>W1711404628
MFYP01000025
Unclassified
Candidatus Peribacteria bacterium RIFOXYC2_FULL_58_10 [MFYP]
3090
3166
+
Val
CAC
[ENA]
¡û
>W1711404644
MFYQ01000001
Unclassified
Candidatus Peribacteria bacterium RIFOXYD1_FULL_54_13 [MFYQ]
29259
29335
+
Val
CAC
[ENA]
¡û
>W1711404688
MFYR01000001
Unclassified
Candidatus Peribacteria bacterium RIFOXYD2_FULL_58_15 [MFYR]
34534
34610
+
Val
CAC
[ENA]
¡û
>W1711582999
MNWP01000019
Unclassified
Candidatus Peregrinibacteria bacterium CG1_02_54_53 [MNWP]
3045
2969
-
Val
CAC
[ENA]
¡û
>WENV170383646
CETX01132660
[CETX] marine metagenome genome assembly TARA_138_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
356
432
+
Val
CAC
[ENA]
¢þ
>SRA1030839
SRR035087.337330
454 Sequencing (SRP001808)
186
110
-
Val
CAC
[SRA]
>C161050442
CP013062
Unclassified
Candidatus Peribacter riflensis [CP013062]
740861
740937
+
Val
CAC
-
¡û
>C161050486
CP013063
Unclassified
Candidatus Peribacter riflensis [CP013063]
741016
741092
+
Val
CAC
-
¡û
>C161050530
CP013064
Unclassified
Candidatus Peribacter riflensis [CP013064]
740947
741023
+
Val
CAC
-
¡û
>C161050574
CP013065
Unclassified
Candidatus Peribacter riflensis [CP013065]
740740
740816
+
Val
CAC
-
¡û
>C161050618
CP013066
Unclassified
Candidatus Peribacter riflensis [CP013066]
741015
741091
+
Val
CAC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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