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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148825 (61 seq.)
>W1710783833
LJFZ01000032
Actinomycetota
Frankia sp. AvcI1 [LJFZ]
7578
7504
-
Pro
GGG
[ENA]
¡û
>W1710787557
LJJX01000005
Actinomycetota
Frankia sp. CpI1-P [LJJX]
33610
33684
+
Pro
GGG
[ENA]
¡û
>W1710793200
LJPA01000005
Actinomycetota
Frankia sp. ACN1ag [LJPA]
251536
251462
-
Pro
GGG
[ENA]
¡û
>W1711053897
LRTJ01000010
Actinomycetota
Frankia casuarinae BR [LRTJ]
121194
121120
-
Pro
GGG
[ENA]
¡û
>W1711053931
LRTK01000005
Actinomycetota
Frankia sp. EI5c [LRTK]
150522
150598
+
Pro
GGG
[ENA]
¡û
>W1711309676
MAQZ01000125
Actinomycetota
Frankia sp. CgIM4 [MAQZ]
87026
87100
+
Pro
GGG
[ENA]
¡û
>W1711317119
MAXA01000213
Actinomycetota
Parafrankia soli NRRL B-16219 [MAXA]
220060
220134
+
Pro
GGG
[ENA]
¡û
>W1711328827
MBLM01000102
Actinomycetota
Parafrankia colletiae Cc1.17 [MBLM]
171215
171141
-
Pro
GGG
[ENA]
¡û
>W1711328984
MBLP01000001
Actinomycetota
Frankia sp. CgIS1 [MBLP]
143007
142933
-
Pro
GGG
[ENA]
¡û
>W1711603550
MOMD01000005
Actinomycetota
Frankia sp. CcI156 [MOMD]
142999
142925
-
Pro
GGG
[ENA]
¡û
>W1711603588
MOME01000010
Actinomycetota
Protofrankia sp. BMG5.30 BMG5.30 [MOME]
88466
88540
+
Pro
GGG
[ENA]
¡û
>W1711612446
MOWP01000026
Actinomycetota
Frankia sp. CcI49 [MOWP]
302071
302145
+
Pro
GGG
[ENA]
¡û
>W1711678668
MRUJ01000002
Actinomycetota
Frankia sp. KB5 [MRUJ]
48454
48528
+
Pro
GGG
[ENA]
¡û
>W1711689405
MSEA01000271
Actinomycetota
Frankia casuarinae Cg70.9 [MSEA]
413
487
+
Pro
GGG
[ENA]
¡û
>W131168016
ARDT01000002
Actinomycetota
Parafrankia discariae BCU110501 [ARDT]
203441
203515
+
Pro
GGG
[ENA]
¡û
>W131170089
ARFH01000002
Actinomycetota
Parafrankia elaeagni BMG5.12 [ARFH]
390786
390860
+
Pro
GGG
[ENA]
¡û
>C009374
CT573213
Actinomycetota
Frankia alni ACN14a [CT573213]
2466792
2466719
-
Pro
GGG
[Ensembl]
¡û
>C009572
CP000249
Actinomycetota
Frankia casuarinae CcI3 [CP000249]
1750369
1750296
-
Pro
GGG
[Ensembl]
¡û
>w007110
AAII01000015
Actinomycetota
Frankia sp. EAN1pec [AAII]
91656
91583
-
Pro
GGG
[ENA]
¡û
>W141195291
AYTZ01000011
Actinomycetota
Frankia sp. CcI6 [AYTZ]
87308
87382
+
Pro
GGG
[ENA]
¡û
>C08005069
CP000820
Actinomycetota
Frankia sp. EAN1pec EAN1.pec [CP000820]
6004893
6004969
+
Pro
GGG
[Ensembl]
¡û
>WENV183662689
ORJL010216926
[ORJL] groundwater metagenome; groundwater
4131
4205
+
Pro
GGG
[ENA]
¢þ
>WENV183672443
ORJL011170608
[ORJL] groundwater metagenome; groundwater
486
412
-
Pro
GGG
[ENA]
¢þ
>W141403428
JDWE01000007
Actinomycetota
Frankia sp. BMG5.23 [JDWE]
143066
142992
-
Pro
GGG
[ENA]
¡û
>W141427357
JENI01000011
Actinomycetota
Frankia casuarinae Thr [JENI]
68249
68323
+
Pro
GGG
[ENA]
¡û
>WENV170961910
MLJW01006071
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
283
209
-
Pro
GGG
[ENA]
¢þ
>W09102704
AAIE01000014
Actinomycetota
Frankia casuarinae CcI3 [AAIE]
69312
69386
+
Pro
GGG
[ENA]
¡û
>W141766950
JOEH01000039
Actinomycetota
Streptacidiphilus jeojiense [JOEH]
64882
64956
+
Pro
GGG
[ENA]
¡û
>W141803575
JPGU01000004
Actinomycetota
Frankia sp. CeD [JPGU]
32007
32081
+
Pro
GGG
[ENA]
¡û
>W141804391
JPHT01000006
Actinomycetota
Frankia sp. Allo2 [JPHT]
87240
87314
+
Pro
GGG
[ENA]
¡û
>W141819783
JQML01000001
Actinomycetota
Streptacidiphilus albus JL83 [JQML]
7231903
7231977
+
Pro
GGG
[ENA]
¡û
>W1910546321
FZMO01000005
Actinomycetota
Frankia canadensis ARgP5 [FZMO]
5767
5693
-
Pro
GGG
[ENA]
¡û
>W1911504286
OESX01000005
Actinomycetota
Frankia canadensis ARgP5 [OESX]
5767
5693
-
Pro
GGG
[ENA]
¡û
>W1510013982
BBPL01000061
Actinomycetota
Streptacidiphilus albus NBRC 100918 [BBPL]
54171
54245
+
Pro
GGG
[ENA]
¡û
>W1510014016
BBPM01000024
Actinomycetota
Streptacidiphilus carbonis NBRC 100919 [BBPM]
60965
60891
-
Pro
GGG
[ENA]
¡û
>W10111540
ADDL01000014
Actinomycetota
Pseudofrankia inefficax EuI1c [ADDL]
124939
124865
-
Pro
GGG
[ENA]
¡û
>W10114032
ADGT01000007
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
50047
50121
+
Pro
GGG
[ENA]
¡û
>W10114176
ADGX01000032
Actinomycetota
Parafrankia sp. EUN1f EUN1f [ADGX]
22711
22637
-
Pro
GGG
[ENA]
¡û
>C11109224
CP002299
Actinomycetota
Pseudofrankia inefficax EuI1c [CP002299]
3546541
3546467
-
Pro
GGG
[Ensembl]
¡û
>C11109383
CP002801
Actinomycetota
Candidatus Protofrankia datiscae Dg1 [CP002801]
2124959
2124885
-
Pro
GGG
[Ensembl]
¡û
>W11114467
ADDL01000014
Actinomycetota
Pseudofrankia inefficax EuI1c [ADDL]
124939
124865
-
Pro
GGG
[ENA]
¡û
>W11117368
ADGT01000007
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
50047
50121
+
Pro
GGG
[ENA]
¡û
>W11117512
ADGX01000032
Actinomycetota
Parafrankia sp. EUN1f EUN1f [ADGX]
22711
22637
-
Pro
GGG
[ENA]
¡û
>W1511479814
JWIO01000011
Actinomycetota
Protofrankia coriariae BMG5.1 [JWIO]
44744
44818
+
Pro
GGG
[ENA]
¡û
>W1511524716
JYFN01000004
Actinomycetota
Frankia torreyi CpI1-S [JYFN]
191910
191836
-
Pro
GGG
[ENA]
¡û
>W1511573838
LANG01000011
Actinomycetota
Pseudofrankia sp. DC12 DC12 [LANG]
1755077
1755151
+
Pro
GGG
[ENA]
¡û
>W121069953
AJWA01000048
Actinomycetota
Frankia sp. QA3 [AJWA]
21552
21626
+
Pro
GGG
[ENA]
¡û
>W1610163596
FAOZ01000028
Actinomycetota
Parafrankia irregularis DSM 45899 [FAOZ]
80378
80304
-
Pro
GGG
[ENA]
¡û
>W1610507945
FLUV01001133
Actinomycetota
Candidatus Protofrankia californiensis sp. [FLUV]
931
857
-
Pro
GGG
[ENA]
¡û
>W1610507946
FLUV01001135
Actinomycetota
Candidatus Protofrankia californiensis sp. [FLUV]
1596
1520
-
Pro
GGG
[ENA]
¡û
>W1610597110
LFCW01000002
Actinomycetota
Frankia sp. R43 [LFCW]
721062
720988
-
Pro
GGG
[ENA]
¡û
>W1610648341
LJFZ01000032
Actinomycetota
Frankia sp. AvcI1 [LJFZ]
7578
7504
-
Pro
GGG
[ENA]
¡û
>W1610651412
LJJX01000005
Actinomycetota
Frankia sp. CpI1-P [LJJX]
33610
33684
+
Pro
GGG
[ENA]
¡û
>W1610657204
LJPA01000005
Actinomycetota
Frankia sp. ACN1ag [LJPA]
251536
251462
-
Pro
GGG
[ENA]
¡û
>W1610895085
LRTJ01000010
Actinomycetota
Frankia casuarinae BR [LRTJ]
121194
121120
-
Pro
GGG
[ENA]
¡û
>W1610895119
LRTK01000005
Actinomycetota
Frankia sp. EI5c [LRTK]
150522
150598
+
Pro
GGG
[ENA]
¡û
>W1710165263
FAOZ01000028
Actinomycetota
Parafrankia irregularis DSM 45899 [FAOZ]
80378
80304
-
Pro
GGG
[ENA]
¡û
>W1710523656
FNIE01000002
Actinomycetota
Actinacidiphila guanduensis [FNIE]
630480
630406
-
Pro
GGG
[ENA]
¡û
>W1710539924
FNVU01000003
Actinomycetota
Actinacidiphila yanglinensis [FNVU]
633413
633487
+
Pro
GGG
[ENA]
¡û
>W1710590873
FRBI01000035
Actinomycetota
Actinacidiphila paucisporea paucisporeus [FRBI]
16896
16822
-
Pro
GGG
[ENA]
¡û
>W1710718269
LFCW01000002
Actinomycetota
Frankia sp. R43 [LFCW]
721062
720988
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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