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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148851 (77 seq.)
>W1711073557
LSIQ01000635
Betaproteobacteria
Comamonadaceae bacterium CCH12-A10 [LSIQ]
12178
12254
+
Met
CAT
[ENA]
¡û
>W1711073660
LSIU01000281
Betaproteobacteria
Comamonadaceae bacterium CCH4-C5 [LSIU]
1435
1359
-
Met
CAT
[ENA]
¡û
>W1711075843
LSKS01000665
Betaproteobacteria
Acidovorax sp. CCH12-A4 [LSKS]
3135
3059
-
Met
CAT
[ENA]
¡û
>W1711385106
MEDS01000008
Betaproteobacteria
Comamonas sp. SCN 65-56 [MEDS]
298583
298507
-
Met
CAT
[ENA]
¡û
>W1711386854
MEFV01000010
Betaproteobacteria
Comamonas sp. SCN 67-35 [MEFV]
11585
11661
+
Met
CAT
[ENA]
¡û
>W1711502132
MKSJ01000193
Betaproteobacteria
Burkholderiales bacterium 66-5 [MKSJ]
2174
2250
+
Met
CAT
[ENA]
¡û
>W1711504300
MKUK01000038
Betaproteobacteria
Alicycliphilus sp. 69-12 [MKUK]
47409
47485
+
Met
CAT
[ENA]
¡û
>W1711504542
MKUR01000007
Betaproteobacteria
Burkholderiales bacterium 66-26 [MKUR]
11557
11633
+
Met
CAT
[ENA]
¡û
>W1711504600
MKUS01000032
Betaproteobacteria
Burkholderiales bacterium 68-12 [MKUS]
44361
44285
-
Met
CAT
[ENA]
¡û
>W1711581697
MNUL01000062
Betaproteobacteria
Comamonadaceae bacterium CG1_02_60_18 [MNUL]
9934
10010
+
Met
CAT
[ENA]
¡û
>W1711584038
MNXY01000208
Betaproteobacteria
Comamonadaceae bacterium CG2_30_60_41 [MNXY]
3804
3728
-
Met
CAT
[ENA]
¡û
>W131239413
BANP01000125
Betaproteobacteria
Acidovorax sp. MR-S7 [BANP]
208122
208198
+
Met
CAT
[ENA]
¡û
>C000375
CP000539
Betaproteobacteria
Acidovorax sp. JS42 [CP000539]
3828784
3828860
+
Met
CAT
[Ensembl]
¡û
>WENV180284846
OBID01135041
[OBID] metagenome; sludge
314
390
+
Met
CAT
[ENA]
¢þ
>WENV181168047
OEIU01139562
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
475
399
-
Met
CAT
[ENA]
¢þ
>WENV181171069
OEIV010139821
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
557
481
-
Met
CAT
[ENA]
¢þ
>WENV181188331
OEOE01087964
[OEOE] activated sludge metagenome; Activated Sludge
55
131
+
Met
CAT
[ENA]
¢þ
>WENV181307856
OFIS01000006
[OFIS] sludge metagenome; sludge
47090
47166
+
Met
CAT
[ENA]
¢þ
>WENV181311204
OFJB01000231
[OFJB] sludge metagenome; sludge
1278
1202
-
Met
CAT
[ENA]
¢þ
>WENV181401662
OFTX01002317
[OFTX] sludge metagenome; sludge
5495
5571
+
Met
CAT
[ENA]
¢þ
>WENV181401676
OFTX01002455
[OFTX] sludge metagenome; sludge
1
77
+
Met
CAT
[ENA]
¢þ
>WENV181401860
OFTX01011672
[OFTX] sludge metagenome; sludge
1
77
+
Met
CAT
[ENA]
¢þ
>WENV181402495
OFTY01002723
[OFTY] sludge metagenome; sludge
651
727
+
Met
CAT
[ENA]
¢þ
>WENV181414621
OGCL01000835
[OGCL] hot springs metagenome; Hot spring water
13253
13177
-
Met
CAT
[ENA]
¢þ
>W141169039
AXVM01000001
Betaproteobacteria
Comamonas badia DSM 17552 [AXVM]
796136
796060
-
Met
CAT
[ENA]
¡û
>WENV181835817
OGVI01024030
[OGVI] freshwater metagenome; freshwater
112
188
+
Met
CAT
[ENA]
¢þ
>WENV181836682
OGVJ01018859
[OGVJ] freshwater metagenome; freshwater
752
676
-
Met
CAT
[ENA]
¢þ
>W141238156
BBJX01000016
Betaproteobacteria
Comamonas granuli NBRC 101663 [BBJX]
20546
20470
-
Met
CAT
[ENA]
¡û
>WENV170010899
APMI01034158
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1019
1095
+
Met
CAT
[ENA]
¢þ
>WENV170011749
APMI01087590
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
702
626
-
Met
CAT
[ENA]
¢þ
>WENV170554300
CXWK01060562
[CXWK] wastewater metagenome; activated sludge
638
562
-
Met
CAT
[ENA]
¢þ
>WENV170625862
FUWD013207739
[FUWD] metagenome; unknown
1443
1519
+
Met
CAT
[ENA]
¢þ
>WENV170634079
FUWD013409413
[FUWD] metagenome; unknown
1443
1519
+
Met
CAT
[ENA]
¢þ
>WENV170639714
JFJP01006216
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
6682
6758
+
Met
CAT
[ENA]
¢þ
>WENV170639787
JFJP01007793
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
10670
10746
+
Met
CAT
[ENA]
¢þ
>WENV170650775
JRYE01018066
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
386
462
+
Met
CAT
[ENA]
¢þ
>C181019004
CP016278
Betaproteobacteria
Diaphorobacter nitroreducens SL-205 [CP016278]
3877868
3877792
-
Met
CAT
-
¡û
>C181158493
CP027667
Betaproteobacteria
Melaminivora suipulveris SC2-9 [CP027667]
2561877
2561801
-
Met
CAT
-
¡û
>C181160001
CP027792
Betaproteobacteria
Pulveribacter suum SC2-7 [CP027792]
984669
984593
-
Met
CAT
-
¡û
>C191099883
CP033069
Betaproteobacteria
Acidovorax sp. 1608163 [CP033069]
3554978
3555054
+
Met
CAT
-
¡û
>W09105966
AASD01000023
Betaproteobacteria
Acidovorax sp. JS42 [AASD]
11852
11928
+
Met
CAT
[ENA]
¡û
>W09117957
ACCM01000009
Betaproteobacteria
[Acidovorax] ebreus TPSY [ACCM]
110685
110609
-
Met
CAT
[ENA]
¡û
>W1910700371
MESL01000021
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_65_40 [MESL]
19750
19826
+
Met
CAT
[ENA]
¡û
>W1910803570
MTBE01000002
Betaproteobacteria
Diaphorobacter sp. LR2014-1 [MTBE]
219924
220000
+
Met
CAT
[ENA]
¡û
>W1910888577
NERX01000003
Betaproteobacteria
Limnohabitans sp. MMS-10A-192 [NERX]
232824
232748
-
Met
CAT
[ENA]
¡û
>W1910888637
NERZ01000001
Betaproteobacteria
Limnohabitans sp. MMS-10A-160 [NERZ]
458569
458493
-
Met
CAT
[ENA]
¡û
>W1910888778
NESC01000003
Betaproteobacteria
Limnohabitans sp. Jir72 [NESC]
301462
301386
-
Met
CAT
[ENA]
¡û
>W1910888828
NESD01000002
Betaproteobacteria
Limnohabitans sp. Jir61 [NESD]
325632
325556
-
Met
CAT
[ENA]
¡û
>W1910889026
NESI01000003
Betaproteobacteria
Limnohabitans sp. B9-3 [NESI]
58239
58163
-
Met
CAT
[ENA]
¡û
>W1910889280
NESO01000005
Betaproteobacteria
Limnohabitans sp. Rim8 [NESO]
30995
30919
-
Met
CAT
[ENA]
¡û
>W1910889300
NESP01000001
Betaproteobacteria
Limnohabitans curvus MWH-C5 [NESP]
1974781
1974857
+
Met
CAT
[ENA]
¡û
>W1910972101
NKDB02000002
Betaproteobacteria
Alicycliphilus denitrificans BQ1 [NKDB]
656272
656348
+
Met
CAT
[ENA]
¡û
>C09104055
CP001392
Betaproteobacteria
[Acidovorax] ebreus TPSY [CP001392]
3118848
3118924
+
Met
CAT
[Ensembl]
¡û
>W1911768529
QXGR01000004
Betaproteobacteria
Simplicispira lacusdiani CPCC 100842 [QXGR]
144741
144665
-
Met
CAT
[ENA]
¡û
>W1810071614
PEEV01000001
Betaproteobacteria
Acidovorax sp. 56 [PEEV]
4750202
4750126
-
Met
CAT
[ENA]
¡û
>W1810072510
PEFJ01000001
Betaproteobacteria
Acidovorax sp. 62 [PEFJ]
370497
370421
-
Met
CAT
[ENA]
¡û
>W1810088932
PGEI01000002
Betaproteobacteria
Comamonadaceae bacterium CD01 [PGEI]
27648
27572
-
Met
CAT
[ENA]
¡û
>W1810088990
PGEJ01000014
Betaproteobacteria
Alicycliphilus denitrificans CD02 [PGEJ]
119742
119818
+
Met
CAT
[ENA]
¡û
>W1810305821
PTQX01000001
Betaproteobacteria
Limnohabitans sp. TS-CS-82 [PTQX]
208313
208237
-
Met
CAT
[ENA]
¡û
>W1810305861
PTQX01000010
Betaproteobacteria
Limnohabitans sp. TS-CS-82 [PTQX]
318
394
+
Met
CAT
[ENA]
¡û
>W1810573094
QEKM01000001
Betaproteobacteria
Simplicispira sp. 125 [QEKM]
3919587
3919511
-
Met
CAT
[ENA]
¡û
>W1810609635
QGUB01000002
Betaproteobacteria
Melaminivora alkalimesophila DSM 26006 [QGUB]
278382
278458
+
Met
CAT
[ENA]
¡û
>W1810884781
QUMV01000001
Betaproteobacteria
Simplicispira sp. 110 [QUMV]
296945
296869
-
Met
CAT
[ENA]
¡û
>W1510016585
BBSJ01000052
Betaproteobacteria
Alicycliphilus sp. B1 [BBSJ]
1180452
1180528
+
Met
CAT
[ENA]
¡û
>W10119621
ADWA01000049
Betaproteobacteria
Alicycliphilus denitrificans BC [ADWA]
27658
27734
+
Met
CAT
[ENA]
¡û
>C11100592
CP002449
Betaproteobacteria
Alicycliphilus denitrificans BC [CP002449]
3801243
3801319
+
Met
CAT
[Ensembl]
¡û
>C11100650
CP002657
Betaproteobacteria
Alicycliphilus denitrificans K601 [CP002657]
4001494
4001418
-
Met
CAT
[Ensembl]
¡û
>W1511390763
JSYI01000078
Betaproteobacteria
Diaphorobacter sp. J5-51 [JSYI]
28045
27969
-
Met
CAT
[ENA]
¡û
>W11125887
ADWA01000049
Betaproteobacteria
Alicycliphilus denitrificans BC [ADWA]
27658
27734
+
Met
CAT
[ENA]
¡û
>W1511518938
JXYQ01000043
Betaproteobacteria
Acidovorax temperans KY4 [JXYQ]
32160
32236
+
Met
CAT
[ENA]
¡û
>W121108903
ALEE01000195
Betaproteobacteria
Melaminivora alkalimesophila CRZ1 [ALEE]
1074
1150
+
Met
CAT
[ENA]
¡û
>W1610042843
BAZJ01000722
Betaproteobacteria
Diaphorobacter nitroreducens JCM 11421 [BAZJ]
867
943
+
Met
CAT
[ENA]
¡û
>W1610912862
LSIQ01000635
Betaproteobacteria
Comamonadaceae bacterium CCH12-A10 [LSIQ]
12178
12254
+
Met
CAT
[ENA]
¡û
>W1610912965
LSIU01000281
Betaproteobacteria
Comamonadaceae bacterium CCH4-C5 [LSIU]
1435
1359
-
Met
CAT
[ENA]
¡û
>W1610915148
LSKS01000665
Betaproteobacteria
Acidovorax sp. CCH12-A4 [LSKS]
3135
3059
-
Met
CAT
[ENA]
¡û
>W1710040003
BAZJ01000722
Betaproteobacteria
Diaphorobacter nitroreducens JCM 11421 [BAZJ]
867
943
+
Met
CAT
[ENA]
¡û
>W1710523005
FNHP01000010
Betaproteobacteria
Oryzisolibacter propanilivorax EPL6 [FNHP]
131790
131866
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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