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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.149034 (33 seq.)
>W1710862427
LMEJ01000010
Alphaproteobacteria
Sphingomonas sp. Root1294 [LMEJ]
281221
281145
-
His
GTG
[ENA]
¡û
>W1710867188
LMIB01000015
Alphaproteobacteria
Sphingomonas sp. Root710 [LMIB]
339916
339840
-
His
GTG
[ENA]
¡û
>W1711069404
LSFP01000002
Alphaproteobacteria
Zymomonas mobilis [LSFP]
672556
672480
-
His
GTG
[ENA]
¡û
>W1711437776
MIPT01000001
Alphaproteobacteria
Sphingomonas haloaromaticamans [MIPT]
2411740
2411816
+
His
GTG
[ENA]
¡û
>C024964
CP000699
Alphaproteobacteria
Rhizorhabdus wittichii RW1 [CP000699]
4375752
4375828
+
His
GTG
[Ensembl]
¡û
>C027950
AE008692
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [AE008692]
1234087
1234011
-
His
GTG
[Ensembl]
¡û
>WENV180026296
FTIT01001064
[FTIT] metagenome; soil
353
277
-
His
GTG
[ENA]
¢þ
>WENV180026395
FTIT01037638
[FTIT] metagenome; soil
727
651
-
His
GTG
[ENA]
¢þ
>WENV180031890
FTJU01000612
[FTJU] metagenome; soil
2993
3069
+
His
GTG
[ENA]
¢þ
>WENV170010235
APMI01011178
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
6042
6118
+
His
GTG
[ENA]
¢þ
>C181088886
CP023677
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023677]
1236447
1236371
-
His
GTG
-
¡û
>C191004241
AP018711
Alphaproteobacteria
Sphingosinicella microcystinivorans B9 [AP018711]
2525220
2525296
+
His
GTG
-
¡û
>C191095152
CP032829
Alphaproteobacteria
Sphingomonas paeninsulae YZ-8 [CP032829]
230792
230716
-
His
GTG
-
¡û
>C191145662
CP035712
Alphaproteobacteria
Zymomonas mobilis ZM4* [CP035712]
1234045
1233969
-
His
GTG
-
¡û
>C191145713
CP035713
Alphaproteobacteria
Zymomonas mobilis ER79ag [CP035713]
1234045
1233969
-
His
GTG
-
¡û
>W09106501
AAVK01000002
Alphaproteobacteria
Rhizorhabdus wittichii RW1 [AAVK]
244296
244372
+
His
GTG
[ENA]
¡û
>W09133974
ACQU01000006
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [ACQU]
86698
86622
-
His
GTG
[ENA]
¡û
>W141713947
JMUB01000036
Alphaproteobacteria
Rhizorhabdus wittichii DC-6 [JMUB]
25959
25883
-
His
GTG
[ENA]
¡û
>W141819162
JQMC01000002
Alphaproteobacteria
Rhizorhabdus wittichii [JQMC]
112054
111978
-
His
GTG
[ENA]
¡û
>C141006132
CP006644
Alphaproteobacteria
Sphingomonas sanxanigenens DSM 19645 = NX02 [CP006644]
2734383
2734307
-
His
GTG
[Ensembl]
¡û
>W1910548696
FZOS01000001
Alphaproteobacteria
Sphingomonas laterariae LNB2 [FZOS]
39813
39889
+
His
GTG
[ENA]
¡û
>W1911391064
NWBU01000010
Alphaproteobacteria
Sphingomonas oleivorans FW-11 [NWBU]
463170
463246
+
His
GTG
[ENA]
¡û
>W1810109388
PHHF01000032
Alphaproteobacteria
Sphingomonas fennica K101 [PHHF]
33692
33616
-
His
GTG
[ENA]
¡û
>W1511581124
LARW01000112
Alphaproteobacteria
Sphingomonas sp. SRS2 [LARW]
25204
25128
-
His
GTG
[ENA]
¡û
>W1511633040
LDES01000024
Alphaproteobacteria
Sphingomonas sp. Y57 [LDES]
300534
300610
+
His
GTG
[ENA]
¡û
>W11167359
AFMP01000042
Alphaproteobacteria
Sphingomonas sp. KC8 [AFMP]
29231
29155
-
His
GTG
[ENA]
¡û
>C121015240
CP003704
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 29191 [CP003704]
134735
134811
+
His
GTG
[Ensembl]
¡û
>C131011842
CP004036
Alphaproteobacteria
Sphingomonas sp. MM-1 [CP004036]
162716
162792
+
His
GTG
[Ensembl]
¡û
>W1610724773
LMEJ01000010
Alphaproteobacteria
Sphingomonas sp. Root1294 [LMEJ]
281221
281145
-
His
GTG
[ENA]
¡û
>W1610729534
LMIB01000015
Alphaproteobacteria
Sphingomonas sp. Root710 [LMIB]
339916
339840
-
His
GTG
[ENA]
¡û
>W1610909932
LSFP01000002
Alphaproteobacteria
Zymomonas mobilis [LSFP]
672556
672480
-
His
GTG
[ENA]
¡û
>W1710512393
FMZJ01000016
Alphaproteobacteria
Sphingomonas sp. YR710 [FMZJ]
75172
75248
+
His
GTG
[ENA]
¡û
>W1710743460
LGVA01000006
Alphaproteobacteria
Sphingomonas sp. Ndbn-20 [LGVA]
65816
65892
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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