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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.149105 (39 seq.)
>W131053706
ANAH01000049
Myxococcota
Cystobacter fuscus DSM 2262 [ANAH]
153184
153108
-
Arg
ACG
[ENA]
¡û
>W131086639
AOBT01000021
Myxococcota
Myxococcus xanthus DZF1 [AOBT]
105312
105388
+
Arg
ACG
[ENA]
¡û
>W1711625299
MPIN01000031
Myxococcota
Cystobacter ferrugineus [MPIN]
27030
26954
-
Arg
ACG
[ENA]
¡û
>W1711628685
MPOI01000028
Myxococcota
Archangium sp. Cb G35 [MPOI]
21550
21626
+
Arg
ACG
[ENA]
¡û
>C014525
CP000113
Myxococcota
Myxococcus xanthus DK 1622 [CP000113]
2271031
2270955
-
Arg
ACG
[Ensembl]
¡û
>w012174
AAMD01000157
Myxococcota
Stigmatella aurantiaca DW4/3-1 [AAMD]
14920
14998
+
Arg
ACG
[ENA]
¡û
>WENV180016103
FSUC01000282
[FSUC] metagenome; soil
5080
5156
+
Arg
ACG
[ENA]
¢þ
>WENV170992027
MWWA01409768
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
233
157
-
Arg
ACG
[ENA]
¢þ
>WENV170992028
MWWA01409768
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
82
6
-
Arg
ACG
[ENA]
¢þ
>C181057894
CP022098
Myxococcota
Cystobacter fuscus DSM 52655 [CP022098]
2970705
2970629
-
Arg
ACG
-
¡û
>C181059845
CP022163
Myxococcota
Melittangium boletus DSM 14713 [CP022163]
6261872
6261796
-
Arg
ACG
-
¡û
>C181060666
CP022203
Myxococcota
Corallococcus macrosporus DSM 14697 [CP022203]
2346755
2346679
-
Arg
ACG
-
¡û
>C191013162
CP017169
Myxococcota
Myxococcus xanthus GH3.5.6c2 [CP017169]
2291678
2291602
-
Arg
ACG
-
¡û
>C191013227
CP017170
Myxococcota
Myxococcus xanthus GH5.1.9c20 [CP017170]
2203809
2203733
-
Arg
ACG
-
¡û
>C191013294
CP017171
Myxococcota
Myxococcus xanthus KF3.2.8c11 [CP017171]
2074665
2074589
-
Arg
ACG
-
¡û
>C191013358
CP017172
Myxococcota
Myxococcus xanthus KF4.3.9c1 [CP017172]
2211461
2211385
-
Arg
ACG
-
¡û
>C191013423
CP017173
Myxococcota
Myxococcus xanthus MC3.3.5c16 [CP017173]
2221815
2221739
-
Arg
ACG
-
¡û
>C191013488
CP017174
Myxococcota
Myxococcus xanthus MC3.5.9c15 [CP017174]
2221815
2221739
-
Arg
ACG
-
¡û
>C191128701
CP034669
Myxococcota
Corallococcus coralloides B035 [CP034669]
2215815
2215739
-
Arg
ACG
-
¡û
>W141695208
JMCB01000015
Myxococcota
Hyalangium minutum [JMCB]
6366
6292
-
Arg
ACG
[ENA]
¡û
>W141695268
JMCC01000071
Myxococcota
Enhygromyxa salina [JMCC]
62252
62326
+
Arg
ACG
[ENA]
¡û
>W141806654
JPMI01000150
Myxococcota
Archangium violaceum Cb vi76 [JPMI]
18348
18424
+
Arg
ACG
[ENA]
¡û
>W1911701613
QNUN01000016
Myxococcota
Corallococcus sp. H22C18031201 [QNUN]
215831
215905
+
Arg
ACG
[ENA]
¡û
>W1810452207
PZOX01000014
Myxococcota
Vitiosangium sp. GDMCC 1.1324 [PZOX]
15982
16058
+
Arg
ACG
[ENA]
¡û
>W1810884686
QUMU01000003
Myxococcota
Archangium gephyra DSM 2261 [QUMU]
362856
362780
-
Arg
ACG
[ENA]
¡û
>C151008209
CP006003
Myxococcota
Myxococcus fulvus 124B02 [CP006003]
2950019
2949945
-
Arg
ACG
[Ensembl]
¡û
>C151083601
CP011509
Myxococcota
Archangium gephyra DSM 2261 [CP011509]
3920899
3920823
-
Arg
ACG
[Ensembl]
¡û
>C151091013
CP012109
Myxococcota
Myxococcus hansupus mixupus [CP012109]
6283996
6284070
+
Arg
ACG
[Ensembl]
¡û
>C11114355
CP002830
Myxococcota
Corallococcus macrosporus HW-1 [CP002830]
4149763
4149687
-
Arg
ACG
[Ensembl]
¡û
>C11119147
CP002271
Myxococcota
Stigmatella aurantiaca DW4/3-1 [CP002271]
3286423
3286349
-
Arg
ACG
[Ensembl]
¡û
>C121012101
CP003389
Myxococcota
Corallococcus coralloides DSM 2259 [CP003389]
2352641
2352565
-
Arg
ACG
[Ensembl]
¡û
>W121102871
AKXT01000022
Myxococcota
Myxococcus hansupus DSM 436 [AKXT]
43386
43312
-
Arg
ACG
[ENA]
¡û
>W121103093
AKYI01000049
Myxococcota
Myxococcus xanthus DZ2 [AKYI]
6108
6184
+
Arg
ACG
[ENA]
¡û
>C131011698
CP004025
Myxococcota
Myxococcus stipitatus DSM 14675 [CP004025]
2822399
2822324
-
Arg
ACG
[Ensembl]
¡û
>W1710513723
FNAJ01000009
Myxococcota
Myxococcus virescens [FNAJ]
107427
107351
-
Arg
ACG
[ENA]
¡û
>W1710529820
FNOH01000016
Myxococcota
Myxococcus xanthus [FNOH]
162895
162971
+
Arg
ACG
[ENA]
¡û
>W1710544105
FOAP01000001
Myxococcota
Stigmatella aurantiaca [FOAP]
581535
581461
-
Arg
ACG
[ENA]
¡û
>W1710554012
FOIB01000011
Myxococcota
Myxococcus fulvus [FOIB]
55439
55365
-
Arg
ACG
[ENA]
¡û
>W1710554371
FOIJ01000027
Myxococcota
Stigmatella erecta [FOIJ]
36734
36660
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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