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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.149231 (114 seq.)
>W1710991011
LPXI01000040
Bacteroidota
Myroides marinus [LPXI]
8720
8644
-
Arg
TCT
[ENA]
¡û
>W1710991012
LPXI01000040
Bacteroidota
Myroides marinus [LPXI]
8563
8487
-
Arg
TCT
[ENA]
¡û
>W1710991058
LPXI01000081
Bacteroidota
Myroides marinus [LPXI]
127373
127447
+
Arg
TCT
[ENA]
¡û
>W1711005783
LQNU01000070
Bacteroidota
Myroides marinus [LQNU]
66991
67065
+
Arg
TCT
[ENA]
¡û
>W1711047431
LROZ01000016
Bacteroidota
Myroides odoratus [LROZ]
33195
33271
+
Arg
TCT
[ENA]
¡û
>W131002797
AGZL01000001
Bacteroidota
Myroides odoratimimus CCUG 12700 [AGZL]
56374
56450
+
Arg
TCT
[ENA]
¡û
>W131002807
AGZL01000005
Bacteroidota
Myroides odoratimimus CCUG 12700 [AGZL]
6952
6876
-
Arg
TCT
[ENA]
¡û
>W131002808
AGZL01000005
Bacteroidota
Myroides odoratimimus CCUG 12700 [AGZL]
6795
6719
-
Arg
TCT
[ENA]
¡û
>W131181234
ARNT01000018
Bacteroidota
Empedobacter brevis NBRC 14943 = ATCC 43319 [ARNT]
76577
76653
+
Arg
TCT
[ENA]
¡û
>W131181267
ARNT01000029
Bacteroidota
Empedobacter brevis NBRC 14943 = ATCC 43319 [ARNT]
212453
212529
+
Arg
TCT
[ENA]
¡û
>W131225332
AUDM01000004
Bacteroidota
Flavobacterium filum DSM 17961 [AUDM]
145904
145830
-
Arg
TCT
[ENA]
¡û
>W1711713379
MTCZ01000346
Bacteroidota
Flavobacterium davisii columnare [MTCZ]
101
177
+
Arg
TCT
[ENA]
¡û
>W1711713382
MTCZ01000346
Bacteroidota
Flavobacterium davisii columnare [MTCZ]
426
500
+
Arg
TCT
[ENA]
¡û
>W1711713423
MTDA01000045
Bacteroidota
Flavobacterium covae columnare [MTDA]
17171
17095
-
Arg
TCT
[ENA]
¡û
>W1711713426
MTDA01000045
Bacteroidota
Flavobacterium covae columnare [MTDA]
16844
16768
-
Arg
TCT
[ENA]
¡û
>W1711713477
MTDC01000188
Bacteroidota
Flavobacterium covae columnare [MTDC]
4378
4454
+
Arg
TCT
[ENA]
¡û
>W1711713532
MTDD01000039
Bacteroidota
Flavobacterium oreochromis columnare [MTDD]
990
914
-
Arg
TCT
[ENA]
¡û
>W1711713535
MTDD01000039
Bacteroidota
Flavobacterium oreochromis columnare [MTDD]
660
584
-
Arg
TCT
[ENA]
¡û
>W1711737989
MUAW01000001
Bacteroidota
Flavobacterium columnare [MUAW]
309684
309608
-
Arg
TCT
[ENA]
¡û
>W1711737992
MUAW01000001
Bacteroidota
Flavobacterium columnare [MUAW]
309358
309282
-
Arg
TCT
[ENA]
¡û
>C171067448
CP017769
Bacteroidota
Myroides sp. ZB35 [CP017769]
3877063
3877139
+
Arg
TCT
-
¡û
>C171067449
CP017769
Bacteroidota
Myroides sp. ZB35 [CP017769]
3877220
3877296
+
Arg
TCT
-
¡û
>C171067518
CP017769
Bacteroidota
Myroides sp. ZB35 [CP017769]
226599
226525
-
Arg
TCT
-
¡û
>C171086254
CP018912
Bacteroidota
Flavobacterium columnare TC 1691 [CP018912]
2708259
2708335
+
Arg
TCT
-
¡û
>C171086257
CP018912
Bacteroidota
Flavobacterium columnare TC 1691 [CP018912]
2708585
2708661
+
Arg
TCT
-
¡û
>W141008084
AGZJ01000012
Bacteroidota
Myroides odoratus CIP 103059 [AGZJ]
38053
37977
-
Arg
TCT
[ENA]
¡û
>W141008113
AGZJ01000051
Bacteroidota
Myroides odoratus CIP 103059 [AGZJ]
32579
32655
+
Arg
TCT
[ENA]
¡û
>W141008139
AGZK01000020
Bacteroidota
Myroides odoratimimus CCUG 3837 [AGZK]
97740
97816
+
Arg
TCT
[ENA]
¡û
>W141008140
AGZK01000020
Bacteroidota
Myroides odoratimimus CCUG 3837 [AGZK]
97897
97973
+
Arg
TCT
[ENA]
¡û
>W141008155
AGZK01000027
Bacteroidota
Myroides odoratimimus CCUG 3837 [AGZK]
271
197
-
Arg
TCT
[ENA]
¡û
>W141188428
AYMS01000005
Bacteroidota
Myroides odoratimimus H1bi [AYMS]
12369
12293
-
Arg
TCT
[ENA]
¡û
>W141188429
AYMS01000005
Bacteroidota
Myroides odoratimimus H1bi [AYMS]
12212
12136
-
Arg
TCT
[ENA]
¡û
>W141188479
AYMS01000047
Bacteroidota
Myroides odoratimimus H1bi [AYMS]
56294
56368
+
Arg
TCT
[ENA]
¡û
>WENV183736972
PJUD01000139
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
54250
54324
+
Arg
TCT
[ENA]
¢þ
>WENV183738335
PJUD01165160
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
149
225
+
Arg
TCT
[ENA]
¢þ
>WENV183738755
PJUE01000157
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
54293
54367
+
Arg
TCT
[ENA]
¢þ
>WENV183739630
PJUE01044731
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
123
199
+
Arg
TCT
[ENA]
¢þ
>WENV183739995
PJUF01000125
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
54250
54324
+
Arg
TCT
[ENA]
¢þ
>WENV183741301
PJUF01080832
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
149
225
+
Arg
TCT
[ENA]
¢þ
>WENV170680697
LFEF01011176
[LFEF] freshwater metagenome; waterbloom
5927
6001
+
Arg
TCT
[ENA]
¢þ
>WENV170988748
MWVY01002190
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
308
234
-
Arg
TCT
[ENA]
¢þ
>C191008566
CP010992
Bacteroidota
Flavobacterium columnare B185 [CP010992]
1092680
1092754
+
Arg
TCT
-
¡û
>C191008569
CP010992
Bacteroidota
Flavobacterium columnare B185 [CP010992]
1093006
1093080
+
Arg
TCT
-
¡û
>C191153029
CP037427
Bacteroidota
Myroides odoratimimus G13 [CP037427]
3713200
3713274
+
Arg
TCT
-
¡û
>C191153030
CP037427
Bacteroidota
Myroides odoratimimus G13 [CP037427]
3713357
3713431
+
Arg
TCT
-
¡û
>C191153100
CP037427
Bacteroidota
Myroides odoratimimus G13 [CP037427]
185227
185153
-
Arg
TCT
-
¡û
>W1910804187
MTCX01000126
Bacteroidota
Flavobacterium columnare 1201 [MTCX]
203
129
-
Arg
TCT
[ENA]
¡û
>W1910804233
MTDB01000045
Bacteroidota
Flavobacterium columnare 1372 [MTDB]
17172
17098
-
Arg
TCT
[ENA]
¡û
>W1910804236
MTDB01000045
Bacteroidota
Flavobacterium columnare 1372 [MTDB]
16845
16771
-
Arg
TCT
[ENA]
¡û
>W1910808988
MUGU01000042
Bacteroidota
Flavobacterium columnare NBRC 100251 = ATCC 23463 [MUGU]
4488
4562
+
Arg
TCT
[ENA]
¡û
>W1910808991
MUGU01000042
Bacteroidota
Flavobacterium columnare NBRC 100251 = ATCC 23463 [MUGU]
4815
4889
+
Arg
TCT
[ENA]
¡û
>W1911243282
NSGJ01000051
Bacteroidota
Myroides sp. N17-2 [NSGJ]
453
379
-
Arg
TCT
[ENA]
¡û
>W1911243283
NSGJ01000051
Bacteroidota
Myroides sp. N17-2 [NSGJ]
282
208
-
Arg
TCT
[ENA]
¡û
>W1911243286
NSGJ01000052
Bacteroidota
Myroides sp. N17-2 [NSGJ]
307
233
-
Arg
TCT
[ENA]
¡û
>W1911533990
OLKH01000086
Bacteroidota
Flavobacterium columnare [OLKH]
1151
1077
-
Arg
TCT
[ENA]
¡û
>W1911533993
OLKH01000086
Bacteroidota
Flavobacterium columnare [OLKH]
826
752
-
Arg
TCT
[ENA]
¡û
>W1911564337
PCMX01000079
Bacteroidota
Flavobacterium columnare NBRC 100251 = ATCC 23463 [PCMX]
38090
38016
-
Arg
TCT
[ENA]
¡û
>W1911564340
PCMX01000079
Bacteroidota
Flavobacterium columnare NBRC 100251 = ATCC 23463 [PCMX]
37764
37690
-
Arg
TCT
[ENA]
¡û
>W1810260938
PQNY01000013
Bacteroidota
Flavobacterium croceum DSM 17960 [PQNY]
68192
68118
-
Arg
TCT
[ENA]
¡û
>W1810355170
PVLU01000003
Bacteroidota
Flavobacterium columnare MS-FC-4 [PVLU]
2070575
2070501
-
Arg
TCT
[ENA]
¡û
>W1810355173
PVLU01000003
Bacteroidota
Flavobacterium columnare MS-FC-4 [PVLU]
2070249
2070175
-
Arg
TCT
[ENA]
¡û
>C151066965
CP010327
Bacteroidota
Myroides sp. A21 [CP010327]
3953963
3954039
+
Arg
TCT
[Ensembl]
¡û
>C151066966
CP010327
Bacteroidota
Myroides sp. A21 [CP010327]
3954120
3954196
+
Arg
TCT
[Ensembl]
¡û
>C151067032
CP010327
Bacteroidota
Myroides sp. A21 [CP010327]
295554
295480
-
Arg
TCT
[Ensembl]
¡û
>C151072864
CP010817
Bacteroidota
Myroides profundi D25 [CP010817]
2728148
2728224
+
Arg
TCT
[Ensembl]
¡û
>C151072865
CP010817
Bacteroidota
Myroides profundi D25 [CP010817]
2728305
2728381
+
Arg
TCT
[Ensembl]
¡û
>C151072911
CP010817
Bacteroidota
Myroides profundi D25 [CP010817]
3169818
3169744
-
Arg
TCT
[Ensembl]
¡û
>W1511481061
JWJO01000012
Bacteroidota
Myroides marinus L41 [JWJO]
66979
67053
+
Arg
TCT
[ENA]
¡û
>C121009091
CP003222
Bacteroidota
Flavobacterium columnare ATCC 49512 [CP003222]
1483256
1483332
+
Arg
TCT
[Ensembl]
¡û
>C121009094
CP003222
Bacteroidota
Flavobacterium columnare ATCC 49512 [CP003222]
1483582
1483658
+
Arg
TCT
[Ensembl]
¡û
>C161059443
CP013690
Bacteroidota
Myroides odoratimimus PR63039 [CP013690]
3799817
3799741
-
Arg
TCT
[Ensembl]
¡û
>C161059444
CP013690
Bacteroidota
Myroides odoratimimus PR63039 [CP013690]
3799660
3799584
-
Arg
TCT
[Ensembl]
¡û
>C161059510
CP013690
Bacteroidota
Myroides odoratimimus PR63039 [CP013690]
160942
160868
-
Arg
TCT
[Ensembl]
¡û
>C161063749
CP013992
Bacteroidota
Flavobacterium covae 94-081 [CP013992]
879112
879036
-
Arg
TCT
[Ensembl]
¡û
>C161063752
CP013992
Bacteroidota
Flavobacterium covae 94-081 [CP013992]
878785
878709
-
Arg
TCT
[Ensembl]
¡û
>C161083208
CP015107
Bacteroidota
Flavobacterium covae C#2 [CP015107]
3010719
3010795
+
Arg
TCT
-
¡û
>C161083211
CP015107
Bacteroidota
Flavobacterium covae C#2 [CP015107]
3011046
3011122
+
Arg
TCT
-
¡û
>C161095526
CP016277
Bacteroidota
Flavobacterium columnare Pf1 [CP016277]
2013509
2013433
-
Arg
TCT
-
¡û
>C161095529
CP016277
Bacteroidota
Flavobacterium columnare Pf1 [CP016277]
2013183
2013107
-
Arg
TCT
-
¡û
>W121034458
AHKQ01000009
Bacteroidota
Myroides odoratus DSM 2801 [AHKQ]
30250
30326
+
Arg
TCT
[ENA]
¡û
>W1610061512
BCMQ01000010
Bacteroidota
Myroides odoratimimus [BCMQ]
65190
65116
-
Arg
TCT
[ENA]
¡û
>W1610061519
BCMQ01000015
Bacteroidota
Myroides odoratimimus [BCMQ]
10385
10309
-
Arg
TCT
[ENA]
¡û
>W1610061520
BCMQ01000015
Bacteroidota
Myroides odoratimimus [BCMQ]
10228
10152
-
Arg
TCT
[ENA]
¡û
>W121009093
AGEC01000008
Bacteroidota
Myroides odoratimimus CCUG 10230 [AGEC]
43475
43551
+
Arg
TCT
[ENA]
¡û
>W121009094
AGEC01000008
Bacteroidota
Myroides odoratimimus CCUG 10230 [AGEC]
43632
43708
+
Arg
TCT
[ENA]
¡û
>W121009102
AGEC01000012
Bacteroidota
Myroides odoratimimus CCUG 10230 [AGEC]
82490
82416
-
Arg
TCT
[ENA]
¡û
>W121009179
AGED01000038
Bacteroidota
Myroides odoratimimus CCUG 12901 [AGED]
100686
100762
+
Arg
TCT
[ENA]
¡û
>W121009180
AGED01000038
Bacteroidota
Myroides odoratimimus CCUG 12901 [AGED]
100843
100919
+
Arg
TCT
[ENA]
¡û
>W121009191
AGED01000042
Bacteroidota
Myroides odoratimimus CCUG 12901 [AGED]
82944
82870
-
Arg
TCT
[ENA]
¡û
>W121009248
AGEE01000034
Bacteroidota
Myroides odoratimimus CIP 101113 [AGEE]
46024
46100
+
Arg
TCT
[ENA]
¡û
>W121009249
AGEE01000034
Bacteroidota
Myroides odoratimimus CIP 101113 [AGEE]
46181
46257
+
Arg
TCT
[ENA]
¡û
>W121009262
AGEE01000046
Bacteroidota
Myroides odoratimimus CIP 101113 [AGEE]
1075
1001
-
Arg
TCT
[ENA]
¡û
>W121034513
AHKQ01000028
Bacteroidota
Myroides odoratus DSM 2801 [AHKQ]
30074
30150
+
Arg
TCT
[ENA]
¡û
>W1610845683
LPXI01000040
Bacteroidota
Myroides marinus [LPXI]
8720
8644
-
Arg
TCT
[ENA]
¡û
>W1610845684
LPXI01000040
Bacteroidota
Myroides marinus [LPXI]
8563
8487
-
Arg
TCT
[ENA]
¡û
>W1610845730
LPXI01000081
Bacteroidota
Myroides marinus [LPXI]
127373
127447
+
Arg
TCT
[ENA]
¡û
>W1610856433
LQNU01000070
Bacteroidota
Myroides marinus [LQNU]
66991
67065
+
Arg
TCT
[ENA]
¡û
>W1610888560
LROZ01000016
Bacteroidota
Myroides odoratus [LROZ]
33195
33271
+
Arg
TCT
[ENA]
¡û
>W1710059177
BCMQ01000010
Bacteroidota
Myroides odoratimimus [BCMQ]
65190
65116
-
Arg
TCT
[ENA]
¡û
>W1710059184
BCMQ01000015
Bacteroidota
Myroides odoratimimus [BCMQ]
10385
10309
-
Arg
TCT
[ENA]
¡û
>W1710059185
BCMQ01000015
Bacteroidota
Myroides odoratimimus [BCMQ]
10228
10152
-
Arg
TCT
[ENA]
¡û
>W1710517865
FNDQ01000006
Bacteroidota
Myroides phaeus [FNDQ]
129025
128949
-
Arg
TCT
[ENA]
¡û
>W1710517878
FNDQ01000008
Bacteroidota
Myroides phaeus [FNDQ]
42821
42895
+
Arg
TCT
[ENA]
¡û
>W1710541924
FNYS01000023
Bacteroidota
Myroides marinus [FNYS]
57877
57951
+
Arg
TCT
[ENA]
¡û
>W1710541926
FNYS01000031
Bacteroidota
Myroides marinus [FNYS]
27964
28040
+
Arg
TCT
[ENA]
¡û
>W1710541927
FNYS01000031
Bacteroidota
Myroides marinus [FNYS]
28122
28198
+
Arg
TCT
[ENA]
¡û
>W1710551280
FOFY01000005
Bacteroidota
Myroides profundi [FOFY]
57945
58019
+
Arg
TCT
[ENA]
¡û
>W1710551305
FOFY01000018
Bacteroidota
Myroides profundi [FOFY]
52917
52993
+
Arg
TCT
[ENA]
¡û
>W1710551306
FOFY01000018
Bacteroidota
Myroides profundi [FOFY]
53074
53150
+
Arg
TCT
[ENA]
¡û
>W1710588431
FQZI01000003
Bacteroidota
Flavobacterium terrae [FQZI]
184539
184465
-
Arg
TCT
[ENA]
¡û
>W1710591219
FRBO01000007
Bacteroidota
Myroides odoratimimus xuanwuensis [FRBO]
232352
232428
+
Arg
TCT
[ENA]
¡û
>W1710591220
FRBO01000007
Bacteroidota
Myroides odoratimimus xuanwuensis [FRBO]
232509
232585
+
Arg
TCT
[ENA]
¡û
>W1710591256
FRBO01000018
Bacteroidota
Myroides odoratimimus xuanwuensis [FRBO]
56416
56490
+
Arg
TCT
[ENA]
¡û
>W1710606325
FWXS01000005
Bacteroidota
Moheibacter sediminis [FWXS]
268484
268408
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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