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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.149241 (31 seq.)
>W131157068
AQQO01000021
Gammaproteobacteria
Plesiomonas shigelloides 302-73 [AQQO]
408019
407943
-
Pro
TGG
[ENA]
¡û
>W131157089
AQQO01000038
Gammaproteobacteria
Plesiomonas shigelloides 302-73 [AQQO]
43466
43390
-
Pro
TGG
[ENA]
¡û
>W131157094
AQQO01000047
Gammaproteobacteria
Plesiomonas shigelloides 302-73 [AQQO]
27529
27453
-
Pro
TGG
[ENA]
¡û
>W131157106
AQQO01000326
Gammaproteobacteria
Plesiomonas shigelloides 302-73 [AQQO]
1148
1072
-
Pro
TGG
[ENA]
¡û
>W1711751046
MUNJ01000003
Gammaproteobacteria
Plesiomonas shigelloides [MUNJ]
31405
31329
-
Pro
TGG
[ENA]
¡û
>W1711751050
MUNJ01000005
Gammaproteobacteria
Plesiomonas shigelloides [MUNJ]
43803
43727
-
Pro
TGG
[ENA]
¡û
>W1711751052
MUNJ01000006
Gammaproteobacteria
Plesiomonas shigelloides [MUNJ]
52304
52228
-
Pro
TGG
[ENA]
¡û
>W1711751101
MUNJ01000023
Gammaproteobacteria
Plesiomonas shigelloides [MUNJ]
1307
1231
-
Pro
TGG
[ENA]
¡û
>WENV183780859
PPYF01188067
[PPYF] human gut metagenome; stool from patient with Crohn's disease
76
1
-
Pro
TGG
[ENA]
¢þ
>WENV183780898
PPYF01188150
[PPYF] human gut metagenome; stool from patient with Crohn's disease
43539
43463
-
Pro
TGG
[ENA]
¢þ
>WENV183780910
PPYF01188199
[PPYF] human gut metagenome; stool from patient with Crohn's disease
31407
31331
-
Pro
TGG
[ENA]
¢þ
>WENV183780926
PPYF01188311
[PPYF] human gut metagenome; stool from patient with Crohn's disease
16225
16301
+
Pro
TGG
[ENA]
¢þ
>WENV183780940
PPYF01188394
[PPYF] human gut metagenome; stool from patient with Crohn's disease
77
1
-
Pro
TGG
[ENA]
¢þ
>WENV183781089
PPYF01194072
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1174
1098
-
Pro
TGG
[ENA]
¢þ
>PL191000675
CP027853
Gammaproteobacteria
Plesiomonas shigelloides MS-17-188 plasmid:pPS-MS-17-188-1 (CP027853)
312973
312897
-
Pro
TGG
[ENA]
¡û
>C181160535
CP027852
Gammaproteobacteria
Plesiomonas shigelloides MS-17-188 [CP027852]
2471976
2472052
+
Pro
TGG
-
¡û
>C181160583
CP027852
Gammaproteobacteria
Plesiomonas shigelloides MS-17-188 [CP027852]
2231373
2231297
-
Pro
TGG
-
¡û
>C181160596
CP027852
Gammaproteobacteria
Plesiomonas shigelloides MS-17-188 [CP027852]
1351133
1351057
-
Pro
TGG
-
¡û
>W1810423053
PYSI01000001
Gammaproteobacteria
Plesiomonas shigelloides FM82 [PYSI]
123567
123643
+
Pro
TGG
[ENA]
¡û
>W1810423092
PYSI01000017
Gammaproteobacteria
Plesiomonas shigelloides FM82 [PYSI]
1252
1176
-
Pro
TGG
[ENA]
¡û
>W1810423094
PYSI01000020
Gammaproteobacteria
Plesiomonas shigelloides FM82 [PYSI]
21120
21196
+
Pro
TGG
[ENA]
¡û
>W1810423098
PYSI01000026
Gammaproteobacteria
Plesiomonas shigelloides FM82 [PYSI]
1156
1080
-
Pro
TGG
[ENA]
¡û
>W1530022759
JRKB01000084
Gammaproteobacteria
Plesiomonas sp. ZOR0011 [JRKB]
291
215
-
Pro
TGG
[ENA]
¡û
>W1511347982
JRKB01000085
Gammaproteobacteria
Plesiomonas sp. ZOR0011 [JRKB]
2195
2269
+
Pro
TGG
[ENA]
¡û
>W1511478837
JWHQ01000004
Gammaproteobacteria
Plesiomonas shigelloides GN7 [JWHQ]
31656
31580
-
Pro
TGG
[ENA]
¡û
>W1511478852
JWHQ01000008
Gammaproteobacteria
Plesiomonas shigelloides GN7 [JWHQ]
35686
35762
+
Pro
TGG
[ENA]
¡û
>W1511478896
JWHQ01000024
Gammaproteobacteria
Plesiomonas shigelloides GN7 [JWHQ]
86770
86846
+
Pro
TGG
[ENA]
¡û
>W1511478907
JWHQ01000031
Gammaproteobacteria
Plesiomonas shigelloides GN7 [JWHQ]
194038
194114
+
Pro
TGG
[ENA]
¡û
>C161109317
LT575468
Gammaproteobacteria
Plesiomonas shigelloides NCTC10360 [LT575468]
147089
147165
+
Pro
TGG
[Ensembl]
¡û
>C161109330
LT575468
Gammaproteobacteria
Plesiomonas shigelloides NCTC10360 [LT575468]
1066456
1066532
+
Pro
TGG
[Ensembl]
¡û
>C161109370
LT575468
Gammaproteobacteria
Plesiomonas shigelloides NCTC10360 [LT575468]
3309164
3309088
-
Pro
TGG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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