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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.149248 (98 seq.)
>W1711460635
MJEK01000012
Bacillota
Enterococcus faecalis [MJEK]
160059
160132
+
Met
CAT
[ENA]
¡û
>W1711460640
MJEK01000012
Bacillota
Enterococcus faecalis [MJEK]
405106
405033
-
Met
CAT
[ENA]
¡û
>W1711771977
MVGQ01000017
Bacillota
Enterococcus faecalis [MVGQ]
31376
31449
+
Met
CAT
[ENA]
¡û
>W1711772004
MVGQ01000153
Bacillota
Enterococcus faecalis [MVGQ]
2103
2030
-
Met
CAT
[ENA]
¡û
>W1711943225
NBDS01000043
Bacillota
Enterococcus faecalis [NBDS]
150698
150771
+
Met
CAT
[ENA]
¡û
>W1711943401
NBDW01000009
Bacillota
Enterococcus faecalis [NBDW]
2451
2378
-
Met
CAT
[ENA]
¡û
>W131011315
AIIM01000006
Bacillota
Enterococcus faecalis B56765 [AIIM]
636661
636588
-
Met
CAT
[ENA]
¡û
>W131011757
AIIT01000016
Bacillota
Enterococcus faecalis 19116 [AIIT]
137524
137597
+
Met
CAT
[ENA]
¡û
>W131012054
AIIZ01000014
Bacillota
Enterococcus faecalis 7330257-1 [AIIZ]
33469
33396
-
Met
CAT
[ENA]
¡û
>W131012083
AIJA01000005
Bacillota
Enterococcus faecalis 7330259-5 [AIJA]
32960
32887
-
Met
CAT
[ENA]
¡û
>W131016161
AISB01000022
Bacillota
Enterococcus faecalis HEF39 [AISB]
310260
310187
-
Met
CAT
[ENA]
¡û
>W131016648
AISK01000009
Bacillota
Enterococcus faecalis UAA943 [AISK]
574701
574628
-
Met
CAT
[ENA]
¡û
>W131032459
AJDY01000019
Bacillota
Enterococcus faecalis HH22 [AJDY]
375374
375447
+
Met
CAT
[ENA]
¡û
>W131189400
ASDN01000015
Bacillota
Enterococcus faecalis RMC1 [ASDN]
420274
420347
+
Met
CAT
[ENA]
¡û
>W131209788
ATJC01000081
Bacillota
Enterococcus faecalis LA3B-2 [ATJC]
122
195
+
Met
CAT
[ENA]
¡û
>W131010492
AHYN01000009
Bacillota
Enterococcus faecalis V583 [AHYN]
638414
638341
-
Met
CAT
[ENA]
¡û
>W131028336
AJBB01000014
Bacillota
Enterococcus faecalis V587 [AJBB]
374282
374355
+
Met
CAT
[ENA]
¡û
>W131032621
AJEB01000015
Bacillota
Enterococcus faecalis SF370 [AJEB]
425910
425983
+
Met
CAT
[ENA]
¡û
>W131190272
ASEE01000020
Bacillota
Enterococcus faecalis TR161 [ASEE]
420932
421005
+
Met
CAT
[ENA]
¡û
>W131190695
ASEN01000030
Bacillota
Enterococcus faecalis SF350 [ASEN]
158367
158440
+
Met
CAT
[ENA]
¡û
>W131202248
ASWP01000006
Bacillota
Enterococcus faecalis V583 [ASWP]
421073
421146
+
Met
CAT
[ENA]
¡û
>C009092
AE016830
Bacillota
Enterococcus faecalis V583 [AE016830]
1443937
1444010
+
Met
CAT
[Ensembl]
¡û
>WENV181217924
OFCL01000600
[OFCL] metagenome; Human gut stool
707
634
-
Ile2
CAT
[ENA]
¢þ
>W141203268
AZIA01000212
Bacillota
Enterococcus faecalis PF3 [AZIA]
187086
187011
-
Met
CAT
[ENA]
¡û
>WENV182826641
OKCT01001162
[OKCT] human gut metagenome; human gut
220
293
+
Ile2
CAT
[ENA]
¢þ
>WENV182830352
OKDY01000001
[OKDY] human gut metagenome; human gut
227977
227904
-
Ile2
CAT
[ENA]
¢þ
>WENV182831052
OKED01000012
[OKED] human gut metagenome; human gut
16017
15944
-
Ile2
CAT
[ENA]
¢þ
>WENV182846098
OKJJ01000023
[OKJJ] human gut metagenome; human gut
59174
59247
+
Ile2
CAT
[ENA]
¢þ
>WENV182846779
OKJR01002564
[OKJR] human gut metagenome; human gut
369
296
-
Ile2
CAT
[ENA]
¢þ
>WENV182847327
OKJX01000006
[OKJX] human gut metagenome; human gut
40145
40218
+
Ile2
CAT
[ENA]
¢þ
>WENV182847329
OKJX01000006
[OKJX] human gut metagenome; human gut
79947
80020
+
Ile2
CAT
[ENA]
¢þ
>WENV182860357
OKOU01000002
[OKOU] human gut metagenome; human gut
209553
209480
-
Ile2
CAT
[ENA]
¢þ
>WENV170001374
AGFS01022321
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
63
136
+
Met
CAT
[ENA]
¢þ
>C191164860
CP039296
Bacillota
Enterococcus faecalis VE14089 [CP039296]
1443935
1444008
+
Met
CAT
-
¡û
>C191168799
CP039548
Bacillota
Enterococcus faecalis VE18379 [CP039548]
1443935
1444008
+
Met
CAT
-
¡û
>C191168864
CP039549
Bacillota
Enterococcus faecalis VE18395 [CP039549]
1443935
1444008
+
Met
CAT
-
¡û
>C191185270
CP041012
Bacillota
Enterococcus faecalis FDAARGOS_611 [CP041012]
1802209
1802136
-
Met
CAT
-
¡û
>W09125905
ACIX01000035
Bacillota
Enterococcus faecalis HH22 [ACIX]
770
843
+
Met
CAT
[ENA]
¡û
>W1910577051
JTEX01000006
Bacillota
Enterococcus faecalis VRE57 [JTEX]
448086
448159
+
Met
CAT
[ENA]
¡û
>W1910577084
JTEY01000002
Bacillota
Enterococcus faecalis VRE65 [JTEY]
379899
379972
+
Met
CAT
[ENA]
¡û
>W1910577159
JTEZ01000005
Bacillota
Enterococcus faecalis VRE69 [JTEZ]
379929
380002
+
Met
CAT
[ENA]
¡û
>W1910577199
JTFA01000006
Bacillota
Enterococcus faecalis VRE80 [JTFA]
363911
363838
-
Met
CAT
[ENA]
¡û
>W1910577244
JTFB01000002
Bacillota
Enterococcus faecalis VRE109 [JTFB]
363926
363853
-
Met
CAT
[ENA]
¡û
>W1910606074
LEPJ01000002
Bacillota
Enterococcus faecalis 236EA1 [LEPJ]
377137
377210
+
Met
CAT
[ENA]
¡û
>W1910606694
LEPT01000004
Bacillota
Enterococcus faecalis 300AEA1 [LEPT]
375490
375417
-
Met
CAT
[ENA]
¡û
>W1910612125
LGBS01000013
Bacillota
Enterococcus faecalis C42 [LGBS]
449216
449289
+
Met
CAT
[ENA]
¡û
>W1910612153
LGBT01000001
Bacillota
Enterococcus faecalis C6 [LGBT]
381070
381143
+
Met
CAT
[ENA]
¡û
>W1910612204
LGBU01000012
Bacillota
Enterococcus faecalis C1 [LGBU]
363911
363838
-
Met
CAT
[ENA]
¡û
>W1910612239
LGBV01000001
Bacillota
Enterococcus faecalis B42 [LGBV]
1239
1312
+
Met
CAT
[ENA]
¡û
>W1910612289
LGBW01000014
Bacillota
Enterococcus faecalis B21 [LGBW]
363920
363847
-
Met
CAT
[ENA]
¡û
>W1910612357
LGBX01000013
Bacillota
Enterococcus faecalis B1 [LGBX]
380777
380850
+
Met
CAT
[ENA]
¡û
>W1910612378
LGBY01000008
Bacillota
Enterococcus faecalis A42 [LGBY]
258341
258414
+
Met
CAT
[ENA]
¡û
>W1910612437
LGBZ01000010
Bacillota
Enterococcus faecalis A20 [LGBZ]
258356
258429
+
Met
CAT
[ENA]
¡û
>W1910612490
LGCA01000018
Bacillota
Enterococcus faecalis A11 [LGCA]
12634
12561
-
Met
CAT
[ENA]
¡û
>W1910612550
LGCB01000005
Bacillota
Enterococcus faecalis A1 [LGCB]
479534
479461
-
Met
CAT
[ENA]
¡û
>W1910943640
NJIM01000018
Bacillota
Enterococcus faecalis 2069 [NJIM]
807
734
-
Met
CAT
[ENA]
¡û
>W1911589490
PJWI01000006
Bacillota
Enterococcus faecalis EN888 [PJWI]
163255
163182
-
Met
CAT
[ENA]
¡û
>W1911589848
PJWP01000001
Bacillota
Enterococcus faecalis EN768 [PJWP]
159554
159627
+
Met
CAT
[ENA]
¡û
>W1911589932
PJWQ01000007
Bacillota
Enterococcus faecalis EN695 [PJWQ]
163034
162961
-
Met
CAT
[ENA]
¡û
>W1911592402
PKMO01000002
Bacillota
Enterococcus faecalis EN741 [PKMO]
159582
159655
+
Met
CAT
[ENA]
¡û
>W1911697062
QNGI01000002
Bacillota
Enterococcus faecalis 10938 [QNGI]
403542
403615
+
Met
CAT
[ENA]
¡û
>W1911698051
QNHA01000006
Bacillota
Enterococcus faecalis 27149 [QNHA]
77507
77434
-
Met
CAT
[ENA]
¡û
>W1911712395
QPTE01000016
Bacillota
Enterococcus faecalis ARL04-506 [QPTE]
22196
22269
+
Met
CAT
[ENA]
¡û
>W1911712630
QPTP01000001
Bacillota
Enterococcus faecalis AR01-215 [QPTP]
197254
197327
+
Met
CAT
[ENA]
¡û
>W1810078312
PEJW02000001
Bacillota
Enterococcus faecalis ET116_16 [PEJW]
311960
311887
-
Met
CAT
[ENA]
¡û
>W1810311189
PTUJ01000044
Bacillota
Enterococcus faecalis CVM N59689F [PTUJ]
10388
10461
+
Met
CAT
[ENA]
¡û
>W1810312279
PTVE01000001
Bacillota
Enterococcus faecalis CVM N59936F [PTVE]
4431
4358
-
Met
CAT
[ENA]
¡û
>W1810312953
PTVQ01000014
Bacillota
Enterococcus faecalis CVM N59847F [PTVQ]
956
883
-
Met
CAT
[ENA]
¡û
>W1810314148
PTWM01000076
Bacillota
Enterococcus faecalis CVM N59544F [PTWM]
957
884
-
Met
CAT
[ENA]
¡û
>W1810316422
PTYG01000012
Bacillota
Enterococcus faecalis CVM N52789 [PTYG]
35742
35815
+
Met
CAT
[ENA]
¡û
>W1810319514
PUAL01000013
Bacillota
Enterococcus faecalis CVM N55181 [PUAL]
29995
29922
-
Met
CAT
[ENA]
¡û
>W1810319554
PUAM01000004
Bacillota
Enterococcus faecalis CVM N55185 [PUAM]
29491
29418
-
Met
CAT
[ENA]
¡û
>W1810320319
PUBA01000008
Bacillota
Enterococcus faecalis CVM N55724 [PUBA]
77078
77151
+
Met
CAT
[ENA]
¡û
>W1810320893
PUBK01000049
Bacillota
Enterococcus faecalis CVM N52648 [PUBK]
65665
65738
+
Met
CAT
[ENA]
¡û
>W10111634
ADDP01000128
Bacillota
Enterococcus faecalis S613 [ADDP]
69834
69907
+
Met
CAT
[ENA]
¡û
>W10111643
ADDQ01000006
Bacillota
Enterococcus faecalis R712 [ADDQ]
25488
25415
-
Met
CAT
[ENA]
¡û
>W10124722
AEBK01000018
Bacillota
Enterococcus faecalis TX1302 [AEBK]
60075
60148
+
Met
CAT
[ENA]
¡û
>W10124945
AEBP01000002
Bacillota
Enterococcus faecalis TX0017 [AEBP]
193984
194057
+
Met
CAT
[ENA]
¡û
>W10125098
AEBS01000017
Bacillota
Enterococcus faecalis DAPTO 516 [AEBS]
65981
66054
+
Met
CAT
[ENA]
¡û
>W10125147
AEBT01000035
Bacillota
Enterococcus faecalis DAPTO 512 [AEBT]
293215
293288
+
Met
CAT
[ENA]
¡û
>W10125492
AECA01000058
Bacillota
Enterococcus faecalis TX0411 [AECA]
221453
221526
+
Met
CAT
[ENA]
¡û
>W10125691
AECF01000006
Bacillota
Enterococcus faecalis TX1341 [AECF]
23794
23867
+
Met
CAT
[ENA]
¡û
>WENV11101446
AGFS01022321
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
63
136
+
Met
CAT
[ENA]
¡û
>W11114561
ADDP01000128
Bacillota
Enterococcus faecalis S613 [ADDP]
69834
69907
+
Met
CAT
[ENA]
¡û
>W11114570
ADDQ01000006
Bacillota
Enterococcus faecalis R712 [ADDQ]
25488
25415
-
Met
CAT
[ENA]
¡û
>W1511365923
JSES01000028
Bacillota
Enterococcus faecalis ATCC 51299 [JSES]
2513
2440
-
Met
CAT
[ENA]
¡û
>W1511445847
JUWE01000124
Bacillota
Enterococcus faecalis 71_EFLS [JUWE]
17817
17744
-
Met
CAT
[ENA]
¡û
>W1511449508
JVBD01000027
Bacillota
Enterococcus faecalis 584_EFLS [JVBD]
60288
60361
+
Met
CAT
[ENA]
¡û
>W1511451724
JVDH01000064
Bacillota
Enterococcus faecalis 533_EFLS [JVDH]
2179
2106
-
Met
CAT
[ENA]
¡û
>W1511454451
JVGB01000023
Bacillota
Enterococcus faecalis 463_EFLS [JVGB]
24559
24632
+
Met
CAT
[ENA]
¡û
>W11131609
AEBK01000018
Bacillota
Enterococcus faecalis TX1302 [AEBK]
60075
60148
+
Met
CAT
[ENA]
¡û
>W1511474451
JWBU01000062
Bacillota
Enterococcus faecalis 1138_EFLS [JWBU]
2626
2553
-
Met
CAT
[ENA]
¡û
>W11131832
AEBP01000002
Bacillota
Enterococcus faecalis TX0017 [AEBP]
193984
194057
+
Met
CAT
[ENA]
¡û
>W11131985
AEBS01000017
Bacillota
Enterococcus faecalis DAPTO 516 [AEBS]
65981
66054
+
Met
CAT
[ENA]
¡û
>W11132034
AEBT01000035
Bacillota
Enterococcus faecalis DAPTO 512 [AEBT]
293215
293288
+
Met
CAT
[ENA]
¡û
>W11132379
AECA01000058
Bacillota
Enterococcus faecalis TX0411 [AECA]
221453
221526
+
Met
CAT
[ENA]
¡û
>W11132578
AECF01000006
Bacillota
Enterococcus faecalis TX1341 [AECF]
23794
23867
+
Met
CAT
[ENA]
¡û
>W121120685
ALZM01000104
Bacillota
Enterococcus faecalis ERV25 [ALZM]
40235
40162
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK