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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.149310 (136 seq.)
>W1711230006
LXZG01000129
Bacillota
Ligilactobacillus salivarius [LXZG]
2544
2619
+
Arg
TCT
[ENA]
¡û
>W1711687583
MSCR01000015
Bacillota
Ligilactobacillus salivarius [MSCR]
81656
81581
-
Arg
TCT
[ENA]
¡û
>W1711943466
NBDX01000007
Bacillota
Ligilactobacillus salivarius [NBDX]
78423
78348
-
Arg
TCT
[ENA]
¡û
>W1711943517
NBDY01000008
Bacillota
Ligilactobacillus salivarius [NBDY]
120027
119952
-
Arg
TCT
[ENA]
¡û
>W1711943546
NBDZ01000008
Bacillota
Ligilactobacillus salivarius [NBDZ]
80889
80814
-
Arg
TCT
[ENA]
¡û
>W1711943582
NBEA01000015
Bacillota
Ligilactobacillus salivarius [NBEA]
213137
213212
+
Arg
TCT
[ENA]
¡û
>W1711943630
NBEB01000031
Bacillota
Ligilactobacillus salivarius [NBEB]
5791
5716
-
Arg
TCT
[ENA]
¡û
>W1711943682
NBEC01000033
Bacillota
Ligilactobacillus salivarius [NBEC]
5792
5717
-
Arg
TCT
[ENA]
¡û
>W1711943729
NBED01000014
Bacillota
Ligilactobacillus salivarius [NBED]
49054
48979
-
Arg
TCT
[ENA]
¡û
>W1711943762
NBEE01000010
Bacillota
Ligilactobacillus salivarius [NBEE]
77350
77275
-
Arg
TCT
[ENA]
¡û
>W1711943805
NBEF01000014
Bacillota
Ligilactobacillus salivarius [NBEF]
122415
122340
-
Arg
TCT
[ENA]
¡û
>W1711943859
NBEG01000011
Bacillota
Ligilactobacillus salivarius [NBEG]
77204
77129
-
Arg
TCT
[ENA]
¡û
>W1711943898
NBEH01000009
Bacillota
Ligilactobacillus salivarius [NBEH]
81064
80989
-
Arg
TCT
[ENA]
¡û
>W1711943943
NBEI01000011
Bacillota
Ligilactobacillus salivarius [NBEI]
81056
80981
-
Arg
TCT
[ENA]
¡û
>W1711944000
NBEJ01000009
Bacillota
Ligilactobacillus salivarius [NBEJ]
5209
5134
-
Arg
TCT
[ENA]
¡û
>W1711944047
NBEK01000010
Bacillota
Ligilactobacillus salivarius [NBEK]
82079
82004
-
Arg
TCT
[ENA]
¡û
>W1711944085
NBEL01000008
Bacillota
Ligilactobacillus salivarius [NBEL]
82134
82059
-
Arg
TCT
[ENA]
¡û
>W1711944135
NBEM01000005
Bacillota
Ligilactobacillus salivarius [NBEM]
92777
92702
-
Arg
TCT
[ENA]
¡û
>W1711944192
NBEN01000006
Bacillota
Ligilactobacillus salivarius [NBEN]
93226
93151
-
Arg
TCT
[ENA]
¡û
>W1711944229
NBEO01000008
Bacillota
Ligilactobacillus salivarius [NBEO]
64038
63963
-
Arg
TCT
[ENA]
¡û
>W1711944273
NBEP01000030
Bacillota
Ligilactobacillus salivarius [NBEP]
9485
9410
-
Arg
TCT
[ENA]
¡û
>W1711944322
NBEQ01000009
Bacillota
Ligilactobacillus salivarius [NBEQ]
5186
5111
-
Arg
TCT
[ENA]
¡û
>W1711944379
NBER01000017
Bacillota
Ligilactobacillus salivarius [NBER]
5134
5059
-
Arg
TCT
[ENA]
¡û
>W1711944421
NBES01000019
Bacillota
Ligilactobacillus salivarius [NBES]
120151
120076
-
Arg
TCT
[ENA]
¡û
>W1711944467
NBET01000014
Bacillota
Ligilactobacillus salivarius [NBET]
78771
78696
-
Arg
TCT
[ENA]
¡û
>W1711944510
NBEU01000007
Bacillota
Ligilactobacillus salivarius [NBEU]
123243
123168
-
Arg
TCT
[ENA]
¡û
>W1711944556
NBEV01000017
Bacillota
Ligilactobacillus salivarius [NBEV]
18728
18653
-
Arg
TCT
[ENA]
¡û
>W1711944609
NBEW01000024
Bacillota
Ligilactobacillus salivarius [NBEW]
5131
5056
-
Arg
TCT
[ENA]
¡û
>W1711944645
NBEX01000029
Bacillota
Ligilactobacillus salivarius [NBEX]
5131
5056
-
Arg
TCT
[ENA]
¡û
>W1711944686
NBEY01000025
Bacillota
Ligilactobacillus salivarius [NBEY]
5131
5056
-
Arg
TCT
[ENA]
¡û
>W1712035987
NFHF01000011
Bacillota
Ligilactobacillus salivarius [NFHF]
39818
39743
-
Arg
TCT
[ENA]
¡û
>W1712036888
NFHV01000008
Bacillota
Ligilactobacillus salivarius [NFHV]
55995
56070
+
Arg
TCT
[ENA]
¡û
>W1712041975
NFLK01000016
Bacillota
Ligilactobacillus salivarius [NFLK]
16181
16106
-
Arg
TCT
[ENA]
¡û
>C171057141
CP017107
Bacillota
Ligilactobacillus salivarius CICC 23174 [CP017107]
1732372
1732447
+
Arg
TCT
-
¡û
>C171113765
CP020858
Bacillota
Ligilactobacillus salivarius ZLS006 [CP020858]
1299932
1300007
+
Arg
TCT
-
¡û
>C171129021
LT604074
Bacillota
Ligilactobacillus salivarius [LT604074]
1434203
1434128
-
Arg
TCT
-
¡û
>C012736
CP000233
Bacillota
Ligilactobacillus salivarius UCC118 [CP000233]
567318
567245
-
Arg
TCT
[Ensembl]
¡û
>WENV181199216
OERG01004184
[OERG] metagenome; Caecal content
1240
1315
+
Arg
TCT
[ENA]
¢þ
>WENV181347906
OFMM01063075
[OFMM] human gut metagenome; human gut
78
153
+
Arg
TCT
[ENA]
¢þ
>WENV181428194
OGCU01003859
[OGCU] metagenome; Human gut stool
2043
1968
-
Arg
TCT
[ENA]
¢þ
>WENV181428632
OGCW01000012
[OGCW] metagenome; Human gut stool
81404
81329
-
Arg
TCT
[ENA]
¢þ
>WENV181429135
OGCX01000041
[OGCX] metagenome; Human gut stool
83124
83199
+
Arg
TCT
[ENA]
¢þ
>WENV181454140
OGEC01018352
[OGEC] metagenome; Human gut stool
436
361
-
Arg
TCT
[ENA]
¢þ
>WENV181454322
OGED01000525
[OGED] metagenome; Human gut stool
20
95
+
Arg
TCT
[ENA]
¢þ
>WENV181455426
OGEE01027512
[OGEE] metagenome; Human gut stool
415
490
+
Arg
TCT
[ENA]
¢þ
>WENV181457886
OGEJ01000014
[OGEJ] metagenome; Human gut stool
81300
81225
-
Arg
TCT
[ENA]
¢þ
>WENV181467943
OGES01000117
[OGES] metagenome; Human gut stool
51557
51482
-
Arg
TCT
[ENA]
¢þ
>WENV181483228
OGFK01001432
[OGFK] metagenome; Human gut stool
7939
7864
-
Arg
TCT
[ENA]
¢þ
>WENV181484574
OGFL01006135
[OGFL] metagenome; Human gut stool
562
487
-
Arg
TCT
[ENA]
¢þ
>WENV181493101
OGFZ01004545
[OGFZ] metagenome; Human gut stool
1186
1261
+
Arg
TCT
[ENA]
¢þ
>WENV181494193
OGGB01000406
[OGGB] metagenome; Human gut stool
34939
34864
-
Arg
TCT
[ENA]
¢þ
>WENV181501443
OGGI01000279
[OGGI] metagenome; Human gut stool
26753
26678
-
Arg
TCT
[ENA]
¢þ
>WENV181505969
OGGM01000014
[OGGM] metagenome; Human gut stool
109020
109095
+
Arg
TCT
[ENA]
¢þ
>WENV181517695
OGGZ01021495
[OGGZ] metagenome; Human gut stool
14
89
+
Arg
TCT
[ENA]
¢þ
>WENV181518631
OGHB01000008
[OGHB] metagenome; Human gut stool
77665
77590
-
Arg
TCT
[ENA]
¢þ
>WENV181525058
OGHJ01000002
[OGHJ] metagenome; Human gut stool
372284
372359
+
Arg
TCT
[ENA]
¢þ
>WENV181532494
OGHP01001082
[OGHP] metagenome; Human gut stool
1223
1148
-
Arg
TCT
[ENA]
¢þ
>WENV181538140
OGHY01001512
[OGHY] metagenome; Human gut stool
9916
9991
+
Arg
TCT
[ENA]
¢þ
>WENV181539143
OGHZ01002039
[OGHZ] metagenome; Human gut stool
2468
2543
+
Arg
TCT
[ENA]
¢þ
>WENV181541029
OGIC01000676
[OGIC] metagenome; Human gut stool
10452
10527
+
Arg
TCT
[ENA]
¢þ
>WENV181550639
OGIN01000015
[OGIN] metagenome; Human gut stool
81286
81211
-
Arg
TCT
[ENA]
¢þ
>WENV181556554
OGIV01000002
[OGIV] metagenome; Human gut stool
198767
198842
+
Arg
TCT
[ENA]
¢þ
>WENV181558190
OGIX01000007
[OGIX] metagenome; Human gut stool
229790
229865
+
Arg
TCT
[ENA]
¢þ
>WENV181563169
OGJG01004545
[OGJG] metagenome; Human gut stool
2505
2580
+
Arg
TCT
[ENA]
¢þ
>WENV181570722
OGJO01000002
[OGJO] metagenome; Human gut stool
78022
77947
-
Arg
TCT
[ENA]
¢þ
>WENV181576003
OGJV01000172
[OGJV] metagenome; Human gut stool
19728
19803
+
Arg
TCT
[ENA]
¢þ
>WENV181581379
OGKA01005801
[OGKA] metagenome; Human gut stool
1486
1411
-
Arg
TCT
[ENA]
¢þ
>WENV181581898
OGKB01000058
[OGKB] metagenome; Human gut stool
20154
20229
+
Arg
TCT
[ENA]
¢þ
>WENV181587809
OGKH01000014
[OGKH] metagenome; Human gut stool
77226
77151
-
Arg
TCT
[ENA]
¢þ
>WENV181588558
OGKJ01000023
[OGKJ] metagenome; Human gut stool
2591
2666
+
Arg
TCT
[ENA]
¢þ
>WENV181589677
OGKM01000012
[OGKM] metagenome; Human gut stool
78927
78852
-
Arg
TCT
[ENA]
¢þ
>WENV181933699
OGYS01041984
[OGYS] human gut metagenome; faeces
505
430
-
Arg
TCT
[ENA]
¢þ
>WENV181993484
OHAS01001121
[OHAS] human gut metagenome; faeces
18913
18838
-
Arg
TCT
[ENA]
¢þ
>W141229116
BAML01000003
Bacillota
Ligilactobacillus hayakitensis JCM 14209 [BAML]
67125
67200
+
Arg
TCT
[ENA]
¡û
>WENV182503522
OIUO01015870
[OIUO] human gut metagenome; human gut
496
421
-
Arg
TCT
[ENA]
¢þ
>W141256174
CBVR010000050
Bacillota
Ligilactobacillus salivarius cp400 [CBVR]
3444
3519
+
Arg
TCT
[ENA]
¡û
>WENV183132597
OLOB01003936
[OLOB] human gut metagenome; faeces
2463
2538
+
Arg
TCT
[ENA]
¢þ
>WENV183179938
OLPH01031544
[OLPH] human gut metagenome; faeces
1355
1280
-
Arg
TCT
[ENA]
¢þ
>WENV183205474
OLPZ01011497
[OLPZ] human gut metagenome; faeces
8
83
+
Arg
TCT
[ENA]
¢þ
>WENV183217981
OLQI01005887
[OLQI] human gut metagenome; faeces
3930
3855
-
Arg
TCT
[ENA]
¢þ
>WENV183407115
OMAC01000041
[OMAC] human gut metagenome; feces
56233
56308
+
Arg
TCT
[ENA]
¢þ
>WENV183427377
OMBN01000002
[OMBN] human gut metagenome; feces
311510
311585
+
Arg
TCT
[ENA]
¢þ
>WENV183428625
OMBO01000085
[OMBO] human gut metagenome; feces
19962
20037
+
Arg
TCT
[ENA]
¢þ
>WENV183472629
OMER01000003
[OMER] human gut metagenome; feces
217915
217990
+
Arg
TCT
[ENA]
¢þ
>WENV183493623
OMGJ01000698
[OMGJ] human gut metagenome; human gut
6571
6496
-
Arg
TCT
[ENA]
¢þ
>WENV183605931
OODN01000132
[OODN] human gut metagenome; human gut
64017
63942
-
Arg
TCT
[ENA]
¢þ
>WENV183788860
PPYF01370738
[PPYF] human gut metagenome; stool from patient with Crohn's disease
4808
4883
+
Arg
TCT
[ENA]
¢þ
>C181182042
CP029616
Bacillota
Ligilactobacillus salivarius DJ-sa-01 [CP029616]
1519513
1519438
-
Arg
TCT
-
¡û
>W09123158
ACGT01000001
Bacillota
Ligilactobacillus salivarius ATCC 11741 [ACGT]
82786
82711
-
Arg
TCT
[ENA]
¡û
>W1910649446
LXYX01000179
Bacillota
Ligilactobacillus salivarius KLW010 [LXYX]
3458
3533
+
Arg
TCT
[ENA]
¡û
>W1910649491
LXYY01000054
Bacillota
Ligilactobacillus salivarius KLW009 [LXYY]
2549
2624
+
Arg
TCT
[ENA]
¡û
>W1910649551
LXYZ01000125
Bacillota
Ligilactobacillus salivarius KLW008 [LXYZ]
2822
2897
+
Arg
TCT
[ENA]
¡û
>W1910649591
LXZA01000061
Bacillota
Ligilactobacillus salivarius KLW007 [LXZA]
2578
2653
+
Arg
TCT
[ENA]
¡û
>W1910649637
LXZB01000057
Bacillota
Ligilactobacillus salivarius KLW006 [LXZB]
5836
5761
-
Arg
TCT
[ENA]
¡û
>W1910649712
LXZC01000053
Bacillota
Ligilactobacillus salivarius KLW005 [LXZC]
2542
2617
+
Arg
TCT
[ENA]
¡û
>W1910649754
LXZD01000122
Bacillota
Ligilactobacillus salivarius KLW004 [LXZD]
26874
26799
-
Arg
TCT
[ENA]
¡û
>W1910649784
LXZE01000157
Bacillota
Ligilactobacillus salivarius KLW003 [LXZE]
2567
2642
+
Arg
TCT
[ENA]
¡û
>W1910649869
LXZF01000065
Bacillota
Ligilactobacillus salivarius KLW002 [LXZF]
5252
5177
-
Arg
TCT
[ENA]
¡û
>W1910649942
LXZH01000095
Bacillota
Ligilactobacillus salivarius KLF007 [LXZH]
1301
1226
-
Arg
TCT
[ENA]
¡û
>W1910649989
LXZJ01000096
Bacillota
Ligilactobacillus salivarius KLF005 [LXZJ]
2543
2618
+
Arg
TCT
[ENA]
¡û
>W1910650043
LXZK01000063
Bacillota
Ligilactobacillus salivarius KLF004 [LXZK]
7676
7601
-
Arg
TCT
[ENA]
¡û
>W1910650084
LXZL01000084
Bacillota
Ligilactobacillus salivarius KLF003 [LXZL]
2585
2660
+
Arg
TCT
[ENA]
¡û
>W1910650150
LXZM01000103
Bacillota
Ligilactobacillus salivarius KLF002 [LXZM]
6649
6574
-
Arg
TCT
[ENA]
¡û
>W1910650209
LXZO01000132
Bacillota
Ligilactobacillus salivarius KLA006 [LXZO]
2574
2649
+
Arg
TCT
[ENA]
¡û
>W1910650254
LXZP01000065
Bacillota
Ligilactobacillus salivarius KLA005 [LXZP]
5829
5754
-
Arg
TCT
[ENA]
¡û
>W1910650321
LXZQ01000077
Bacillota
Ligilactobacillus salivarius KLA004 [LXZQ]
5838
5763
-
Arg
TCT
[ENA]
¡û
>W1910650389
LXZR01000079
Bacillota
Ligilactobacillus salivarius KLA003 [LXZR]
5844
5769
-
Arg
TCT
[ENA]
¡û
>W1910650439
LXZS01000061
Bacillota
Ligilactobacillus salivarius KLA002 [LXZS]
2581
2656
+
Arg
TCT
[ENA]
¡û
>W1910650493
LXZT01000072
Bacillota
Ligilactobacillus salivarius KLA001 [LXZT]
2574
2649
+
Arg
TCT
[ENA]
¡û
>W1910874509
NDYW01000006
Bacillota
Ligilactobacillus salivarius L28 [NDYW]
72825
72750
-
Arg
TCT
[ENA]
¡û
>W1911569774
PCZA01000002
Bacillota
Lactobacillus sp. UMNPBX9 [PCZA]
50255
50180
-
Arg
TCT
[ENA]
¡û
>W1911570170
PCZH01000001
Bacillota
Lactobacillus sp. UMNPBX2 [PCZH]
90726
90801
+
Arg
TCT
[ENA]
¡û
>W1810070409
PECX01000001
Bacillota
Ligilactobacillus salivarius SGL 03 [PECX]
1171435
1171510
+
Arg
TCT
[ENA]
¡û
>W1810185965
PKGN01000007
Bacillota
Ligilactobacillus salivarius 290 [PKGN]
148862
148937
+
Arg
TCT
[ENA]
¡û
>W1810472379
QAGU01000001
Bacillota
Ligilactobacillus salivarius DS2_12 [QAGU]
82913
82838
-
Arg
TCT
[ENA]
¡û
>W1810472425
QAGV01000001
Bacillota
Ligilactobacillus salivarius DS11_12 [QAGV]
439805
439880
+
Arg
TCT
[ENA]
¡û
>W1810488186
QAZF01000001
Bacillota
Ligilactobacillus salivarius DS3_12 [QAZF]
392834
392909
+
Arg
TCT
[ENA]
¡û
>W1810488257
QAZG01000003
Bacillota
Ligilactobacillus salivarius DS13_12 [QAZG]
90932
91007
+
Arg
TCT
[ENA]
¡û
>W1810584334
QFAS01000004
Bacillota
Ligilactobacillus salivarius A3iob [QFAS]
79290
79215
-
Arg
TCT
[ENA]
¡û
>W1810797346
QRMK01000011
Bacillota
Ligilactobacillus salivarius AM09-40 [QRMK]
9270
9345
+
Arg
TCT
[ENA]
¡û
>W1810829781
QSLH01000001
Bacillota
Ligilactobacillus salivarius AM25-8 [QSLH]
77969
77894
-
Arg
TCT
[ENA]
¡û
>W1810838179
QSTB01000008
Bacillota
Ligilactobacillus salivarius OM08-20 [QSTB]
81802
81727
-
Arg
TCT
[ENA]
¡û
>C151030966
CP007646
Bacillota
Ligilactobacillus salivarius JCM1046 [CP007646]
569058
568983
-
Arg
TCT
[Ensembl]
¡û
>C151082345
CP011403
Bacillota
Ligilactobacillus salivarius str. Ren [CP011403]
561222
561147
-
Arg
TCT
[Ensembl]
¡û
>W10124243
AEBA01000038
Bacillota
Ligilactobacillus salivarius ACS-116-V-Col5a [AEBA]
5073
4998
-
Arg
TCT
[ENA]
¡û
>C10109081
CP002034
Bacillota
Ligilactobacillus salivarius CECT 5713 [CP002034]
567918
567843
-
Arg
TCT
[Ensembl]
¡û
>W1511441061
JUQA01000097
Bacillota
Ligilactobacillus salivarius 866_LSAL [JUQA]
5128
5053
-
Arg
TCT
[ENA]
¡û
>W1511443834
JUTI01000056
Bacillota
Ligilactobacillus salivarius 778_LSAL [JUTI]
30763
30838
+
Arg
TCT
[ENA]
¡û
>W1511448799
JVAF01000079
Bacillota
Ligilactobacillus salivarius 609_LSAL [JVAF]
6507
6432
-
Arg
TCT
[ENA]
¡û
>W11131131
AEBA01000038
Bacillota
Ligilactobacillus salivarius ACS-116-V-Col5a [AEBA]
5073
4998
-
Arg
TCT
[ENA]
¡û
>W11167224
AFMN01000001
Bacillota
Ligilactobacillus salivarius NIAS840 [AFMN]
1047988
1047913
-
Arg
TCT
[ENA]
¡û
>W11168595
AFOI01000004
Bacillota
Ligilactobacillus salivarius GJ-24 [AFOI]
352835
352910
+
Arg
TCT
[ENA]
¡û
>W121045145
AICL01000003
Bacillota
Ligilactobacillus salivarius SMXD51 [AICL]
745290
745215
-
Arg
TCT
[ENA]
¡û
>W1610031402
AYYT01000003
Bacillota
Ligilactobacillus salivarius DSM 20555 = ATCC 11741 [AYYT]
81112
81037
-
Arg
TCT
[ENA]
¡û
>W1610037610
AZGD01000090
Bacillota
Ligilactobacillus hayakitensis DSM 18933 = JCM 14209 [AZGD]
35641
35566
-
Arg
TCT
[ENA]
¡û
>W1710034649
AZGD01000090
Bacillota
Ligilactobacillus hayakitensis DSM 18933 = JCM 14209 [AZGD]
35641
35566
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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