This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.149404 (108 seq.)
>W1710876346
LMPD01000003
Bacteroidota
Pedobacter sp. Leaf176 [LMPD]
500454
500372
-
Leu
CAA
[ENA]
¡û
>W1711138945
LVEN01000046
Bacteroidota
Flavobacterium piscis [LVEN]
253275
253357
+
Leu
CAA
[ENA]
¡û
>W1711413526
MGWH01000003
Bacteroidota
Flavobacteria bacterium GWA2_35_26 [MGWH]
240350
240268
-
Leu
CAA
[ENA]
¡û
>W1711513066
MLFK01000005
Bacteroidota
Flavobacterium johnsoniae [MLFK]
316519
316437
-
Leu
CAA
[ENA]
¡û
>W1711712514
MTCA01000016
Bacteroidota
Flavobacterium sp. FPG59 [MTCA]
2871
2953
+
Leu
CAA
[ENA]
¡û
>W1711748546
MULJ01000002
Bacteroidota
Flavobacterium sp. KBS0721 [MULJ]
648399
648479
+
Leu
CAA
[ENA]
¡û
>W1712082062
NHOT01000007
Bacteroidota
Pedobacter sp. AJM [NHOT]
64750
64832
+
Leu
CAA
[ENA]
¡û
>C171053186
CP016907
Bacteroidota
Flavobacterium anhuiense GSE09 [CP016907]
1709798
1709878
+
Leu
CAA
-
¡û
>C171063308
CP017479
Bacteroidota
Flavobacterium gilvum EM1308 [CP017479]
1215033
1215113
+
Leu
CAA
-
¡û
>W131225274
AUDL01000004
Bacteroidota
Flavobacterium denitrificans DSM 15936 [AUDL]
438314
438394
+
Leu
CAA
[ENA]
¡û
>W131226975
AUEU01000006
Bacteroidota
Flavobacterium sp. URHB0058 [AUEU]
241052
240970
-
Leu
CAA
[ENA]
¡û
>W131229130
AUGO01000001
Bacteroidota
Flavobacterium soli DSM 19725 [AUGO]
669558
669640
+
Leu
CAA
[ENA]
¡û
>W131237947
AUSH01000080
Bacteroidota
Bacteroidetes bacterium SCGC AAA027-N21 [AUSH]
25232
25314
+
Leu
CAA
[ENA]
¡û
>w027774
ABCM01000001
Bacteroidota
Pedobacter sp. BAL39 [ABCM]
205846
205767
-
Leu
CAA
[ENA]
¡û
>WENV181315202
OFJN01008848
[OFJN] marine metagenome; sea ice
85
165
+
Leu
CAA
[ENA]
¢þ
>WENV181379864
OFRD01012070
[OFRD] wastewater metagenome; Exp Tend CN 100WW
620
540
-
Leu
CAA
[ENA]
¢þ
>WENV181384055
OFRH01011588
[OFRH] wastewater metagenome; Exp Tend NO 100WW
119
199
+
Leu
CAA
[ENA]
¢þ
>WENV181399066
OFSE01009121
[OFSE] wastewater metagenome; Exp Tend VB 50WW
1289
1369
+
Leu
CAA
[ENA]
¢þ
>W141289764
JARP01000002
Bacteroidota
Flavobacterium sp. KJJ [JARP]
336799
336717
-
Leu
CAA
[ENA]
¡û
>W141350096
JCKI01000002
Bacteroidota
Pedobacter sp. R20-19 [JCKI]
620795
620877
+
Leu
CAA
[ENA]
¡û
>WENV183726666
PJTO01000057
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
17305
17385
+
Leu
CAA
[ENA]
¢þ
>WENV183736111
PJUC01000030
[PJUC] soil metagenome; Soil enriched on filter paper
152120
152040
-
Leu
CAA
[ENA]
¢þ
>ENV08001506
ABNF01006931
freshwater metagenome; microbial fraction from tilapia pond at Kent SeaTech (Salton See, CA)
22
104
+
Leu
CAA
[ENA]
¡û
>WENV170559517
CXWL01127039
[CXWL] groundwater metagenome; biofilm material
1068
1150
+
Leu
CAA
[ENA]
¢þ
>WENV170639189
JFJP01001334
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
3560
3640
+
Leu
CAA
[ENA]
¢þ
>WENV170642765
JFJP01044459
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
873
791
-
Leu
CAA
[ENA]
¢þ
>C181175959
CP029187
Bacteroidota
Flavobacterium pallidum HYN0049 [CP029187]
1296031
1295951
-
Leu
CAA
-
¡û
>C181176656
CP029255
Bacteroidota
Flavobacterium crocinum HYN0056 [CP029255]
1240349
1240269
-
Leu
CAA
-
¡û
>C191025479
CP023642
Bacteroidota
Flavobacterium anhuiense M168 [CP023642]
112697
112617
-
Leu
CAA
-
¡û
>C191155241
CP037933
Bacteroidota
Flavobacterium nackdongense GS13 [CP037933]
2344133
2344053
-
Leu
CAA
-
¡û
>W141727196
JNCP01000007
Bacteroidota
Flavobacterium gilvum EM1308 [JNCP]
19945
19865
-
Leu
CAA
[ENA]
¡û
>W141727229
JNCP01000159
Bacteroidota
Flavobacterium gilvum EM1308 [JNCP]
539
459
-
Leu
CAA
[ENA]
¡û
>W141727640
JNFF01000073
Bacteroidota
Pedobacter antarcticus 4BY [JNFF]
149
67
-
Leu
CAA
[ENA]
¡û
>W141809347
JPRL01000001
Bacteroidota
Flavobacterium reichenbachii [JPRL]
3944372
3944454
+
Leu
CAA
[ENA]
¡û
>W141809398
JPRM01000007
Bacteroidota
Flavobacterium hydatis [JPRM]
10115
10033
-
Leu
CAA
[ENA]
¡û
>W141816537
JQJY01000002
Bacteroidota
Flavobacterium sp. ASV13 Fl [JQJY]
652205
652287
+
Leu
CAA
[ENA]
¡û
>W1910577902
JUIV01000002
Bacteroidota
Flavobacterium anhuiense RCM74 [JUIV]
149857
149777
-
Leu
CAA
[ENA]
¡û
>W1910792788
MRCM01000014
Bacteroidota
Flavobacterium sp. ACN2 [MRCM]
138683
138603
-
Leu
CAA
[ENA]
¡û
>W1910793008
MRCQ01000008
Bacteroidota
Flavobacterium sp. ACN6 [MRCQ]
266826
266906
+
Leu
CAA
[ENA]
¡û
>W1910805335
MTQF01000003
Bacteroidota
[Flexibacter] sp. ATCC 35103 [MTQF]
142305
142225
-
Leu
CAA
[ENA]
¡û
>W1910808944
MUGT01000074
Bacteroidota
Flavobacterium branchiophilum ATCC 35035 [MUGT]
2656
2736
+
Leu
CAA
[ENA]
¡û
>W1910809061
MUGV01000032
Bacteroidota
Flavobacterium frigidimaris DSM 15937 [MUGV]
4327
4407
+
Leu
CAA
[ENA]
¡û
>W1910809085
MUGW01000009
Bacteroidota
Flavobacterium hercynium DSM 18292 [MUGW]
17996
18076
+
Leu
CAA
[ENA]
¡û
>W1910809215
MUGY01000027
Bacteroidota
Flavobacterium hydatis ATCC 29551 [MUGY]
112887
112967
+
Leu
CAA
[ENA]
¡û
>W1910809302
MUHA01000007
Bacteroidota
Flavobacterium oncorhynchi CCUG 59446 [MUHA]
388824
388744
-
Leu
CAA
[ENA]
¡û
>W1910809365
MUHB01000016
Bacteroidota
Flavobacterium pectinovorum ATCC 19366 [MUHB]
165887
165807
-
Leu
CAA
[ENA]
¡û
>W1910809556
MUHF01000019
Bacteroidota
Flavobacterium reichenbachii DSM 21791 [MUHF]
125719
125639
-
Leu
CAA
[ENA]
¡û
>W1911139445
NOXX01000189
Bacteroidota
Flavobacterium aurantiibacter TH167 [NOXX]
32395
32315
-
Leu
CAA
[ENA]
¡û
>W1911564295
PCMW01000116
Bacteroidota
Flavobacterium branchiophilum ATCC 35036 [PCMW]
11368
11448
+
Leu
CAA
[ENA]
¡û
>SRA1001609
SRR001073.47561
Tilapia Farm, microbial fraction from tilapia pond at Kent SeaTech (Salton See, CA) (SRP000161)
22
104
+
Leu
CAA
[SRA]
>W1810072198
PEFE01000001
Bacteroidota
Flavobacterium sp. 11 [PEFE]
775946
775866
-
Leu
CAA
[ENA]
¡û
>W1810156536
PJBJ01000030
Bacteroidota
Flavobacterium sp. ALD4 [PJBJ]
1085018
1085098
+
Leu
CAA
[ENA]
¡û
>W1810265799
PQVF01000003
Bacteroidota
Solitalea longa HR-AV [PQVF]
107082
107162
+
Leu
CAA
[ENA]
¡û
>W1810475387
QAIZ01000101
Bacteroidota
Flavobacterium sp. HMWF030 [QAIZ]
1113
1033
-
Leu
CAA
[ENA]
¡û
>W1810530647
QCWV01000127
Bacteroidota
Flavobacterium sp. WLB [QCWV]
1377
1297
-
Leu
CAA
[ENA]
¡û
>W1810533222
QCZH01000001
Bacteroidota
Flavobacterium laiguense LB2P30 [QCZH]
663841
663921
+
Leu
CAA
[ENA]
¡û
>W1810580567
QETH01000041
Bacteroidota
Flavobacterium sp. HTF [QETH]
7526
7446
-
Leu
CAA
[ENA]
¡û
>W1810657796
QJHL01000002
Bacteroidota
Flavobacterium hydrophilum IMCC34758 [QJHL]
234664
234584
-
Leu
CAA
[ENA]
¡û
>W1810669789
QJRJ01000069
Bacteroidota
Flavobacterium ginsenosidimutans THG 01 [QJRJ]
168700
168620
-
Leu
CAA
[ENA]
¡û
>W1810672655
QJTO01000004
Bacteroidota
Flavobacterium sp. GV069 [QJTO]
268126
268206
+
Leu
CAA
[ENA]
¡û
>W1810722607
QNUX01000011
Bacteroidota
Flavobacterium psychrolimnae LMG 22018 [QNUX]
2964
3044
+
Leu
CAA
[ENA]
¡û
>W1810723019
QNVY01000001
Bacteroidota
Flavobacterium petrolei Kopri-42 [QNVY]
303030
302950
-
Leu
CAA
[ENA]
¡û
>W1810885475
QUNI01000026
Bacteroidota
Flavobacterium aquicola DSM 100880 [QUNI]
2822
2902
+
Leu
CAA
[ENA]
¡û
>W1810885518
QUNJ01000004
Bacteroidota
Pedobacter sp. YR510 [QUNJ]
733484
733404
-
Leu
CAA
[ENA]
¡û
>W1511390937
JSYM01000004
Bacteroidota
Flavobacterium sp. AED [JSYM]
187635
187553
-
Leu
CAA
[ENA]
¡û
>W1511391010
JSYO01000012
Bacteroidota
Flavobacterium sp. JRM [JSYO]
56973
57055
+
Leu
CAA
[ENA]
¡û
>W1511391118
JSYP01000038
Bacteroidota
Flavobacterium sp. KMS [JSYP]
28824
28744
-
Leu
CAA
[ENA]
¡û
>W1511508978
JXQR01000018
Bacteroidota
Flavobacterium sp. MEB061 [JXQR]
91199
91281
+
Leu
CAA
[ENA]
¡û
>W1511646547
LECU01000001
Bacteroidota
Pedobacter sp. BMA [LECU]
482061
482143
+
Leu
CAA
[ENA]
¡û
>W1511656867
LEKS01000004
Bacteroidota
Flavobacterium sp. ABG [LEKS]
159256
159174
-
Leu
CAA
[ENA]
¡û
>C121011493
CP003349
Bacteroidota
Solitalea canadensis DSM 3403 [CP003349]
1109441
1109521
+
Leu
CAA
[Ensembl]
¡û
>WENV058391
AACY023327475
Marine microbial communities from Global Ocean Sampling (GOS)
486
402
-
Leu
CAA
[ENA]
>W121017852
AGSC01000042
Bacteroidota
Solitalea canadensis DSM 3403 [AGSC]
200470
200390
-
Leu
CAA
[ENA]
¡û
>W121034189
AHKF01000011
Bacteroidota
Flavobacterium frigoris PS1 [AHKF]
15158
15240
+
Leu
CAA
[ENA]
¡û
>W121063644
AJLG01000008
Bacteroidota
Pedobacter agri PB92 [AJLG]
4742
4660
-
Leu
CAA
[ENA]
¡û
>W121086530
AKJZ01000040
Bacteroidota
Flavobacterium sp. CF136 [AKJZ]
199772
199690
-
Leu
CAA
[ENA]
¡û
>W121103524
AKZQ01000026
Bacteroidota
Flavobacterium sp. F52 [AKZQ]
253535
253455
-
Leu
CAA
[ENA]
¡û
>W1610521462
JMTM01000046
Bacteroidota
Flavobacterium succinicans [JMTM]
20080
20160
+
Leu
CAA
[ENA]
¡û
>W1610724565
LMEF01000012
Bacteroidota
Flavobacterium sp. Root420 [LMEF]
82987
82905
-
Leu
CAA
[ENA]
¡û
>W1610738692
LMPD01000003
Bacteroidota
Pedobacter sp. Leaf176 [LMPD]
500454
500372
-
Leu
CAA
[ENA]
¡û
>W1610739417
LMPU01000009
Bacteroidota
Pedobacter sp. Leaf194 [LMPU]
227029
226949
-
Leu
CAA
[ENA]
¡û
>W1610949953
LVEN01000046
Bacteroidota
Flavobacterium piscis [LVEN]
253275
253357
+
Leu
CAA
[ENA]
¡û
>W1610950038
LVEP01000029
Bacteroidota
Flavobacterium crassostreae LPB0076 [LVEP]
33809
33729
-
Leu
CAA
[ENA]
¡û
>W1710507351
FMVF01000004
Bacteroidota
Flavobacterium caeni [FMVF]
222936
223016
+
Leu
CAA
[ENA]
¡û
>W1710517096
FNDB01000003
Bacteroidota
Flavobacterium omnivorum [FNDB]
331634
331552
-
Leu
CAA
[ENA]
¡û
>W1710528012
FNMV01000001
Bacteroidota
Flavobacterium degerlachei [FNMV]
110329
110249
-
Leu
CAA
[ENA]
¡û
>W1710531674
FNPS01000005
Bacteroidota
Flavobacterium aquidurense [FNPS]
38954
39036
+
Leu
CAA
[ENA]
¡û
>W1710539658
FNVP01000001
Bacteroidota
Flavobacterium urumqiense [FNVP]
297389
297307
-
Leu
CAA
[ENA]
¡û
>W1710547992
FODK01000001
Bacteroidota
Flavobacterium sp. fv08 [FODK]
596809
596889
+
Leu
CAA
[ENA]
¡û
>W1710548165
FODN01000007
Bacteroidota
Flavobacterium sinopsychrotolerans [FODN]
128884
128966
+
Leu
CAA
[ENA]
¡û
>W1710551667
FOGG01000006
Bacteroidota
Pedobacter rhizosphaerae [FOGG]
199578
199496
-
Leu
CAA
[ENA]
¡û
>W1710555446
FOJM01000005
Bacteroidota
Pedobacter suwonensis [FOJM]
86150
86232
+
Leu
CAA
[ENA]
¡û
>W1710569851
FOUT01000004
Bacteroidota
Flavobacterium succinicans [FOUT]
176964
176884
-
Leu
CAA
[ENA]
¡û
>W1710585047
FQWB01000001
Bacteroidota
Flavobacterium fluvii [FQWB]
855042
855122
+
Leu
CAA
[ENA]
¡û
>W1710585090
FQWC01000001
Bacteroidota
Flavobacterium defluvii [FQWC]
890492
890572
+
Leu
CAA
[ENA]
¡û
>W1710585242
FQWF01000008
Bacteroidota
Flavobacterium micromati [FQWF]
106135
106215
+
Leu
CAA
[ENA]
¡û
>W1710585305
FQWG01000024
Bacteroidota
Flavobacterium frigidimaris [FQWG]
299
217
-
Leu
CAA
[ENA]
¡û
>W1710585320
FQWH01000001
Bacteroidota
Flavobacterium johnsoniae [FQWH]
906134
906214
+
Leu
CAA
[ENA]
¡û
>W1710586043
FQWW01000002
Bacteroidota
Flavobacterium sp. CF108 [FQWW]
597224
597304
+
Leu
CAA
[ENA]
¡û
>W1710589910
FRAO01000001
Bacteroidota
Flavobacterium johnsoniae [FRAO]
599737
599657
-
Leu
CAA
[ENA]
¡û
>W1710591490
FRBT01000002
Bacteroidota
Flavobacterium chilense [FRBT]
167260
167340
+
Leu
CAA
[ENA]
¡û
>W1710591551
FRBU01000007
Bacteroidota
Flavobacterium xanthum [FRBU]
27406
27326
-
Leu
CAA
[ENA]
¡û
>W1710591682
FRBX01000002
Bacteroidota
Flavobacterium pectinovorum [FRBX]
346300
346218
-
Leu
CAA
[ENA]
¡û
>W1710591728
FRBY01000001
Bacteroidota
Flavobacterium saccharophilum [FRBY]
662634
662554
-
Leu
CAA
[ENA]
¡û
>W1710592411
FRCL01000002
Bacteroidota
Flavobacterium xinjiangense [FRCL]
85914
85994
+
Leu
CAA
[ENA]
¡û
>W1710593376
FRDK01000001
Bacteroidota
Flavobacterium fryxellicola [FRDK]
289730
289650
-
Leu
CAA
[ENA]
¡û
>W1710620410
JMTM01000046
Bacteroidota
Flavobacterium succinicans [JMTM]
20080
20160
+
Leu
CAA
[ENA]
¡û
>W1710756357
LIAC01000019
Bacteroidota
Flavobacterium sp. NLM [LIAC]
36823
36905
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK