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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.149485 (9 seq.)
>WENV170411000
CEUJ01154552
[CEUJ] marine metagenome genome assembly TARA_125_MIX_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
348
273
-
Ile
TAT
[ENA]
¢þ
>WENV170411309
CEUJ01174748
[CEUJ] marine metagenome genome assembly TARA_125_MIX_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
541
616
+
Ile
TAT
[ENA]
¢þ
>WENV170523171
CEWG01178104
[CEWG] marine metagenome genome assembly TARA_102_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
27
101
+
Ile
TAT
[ENA]
¢þ
>WENV170756362
LUMO01025672
[LUMO] marine metagenome; Red Sea water column Station 22 - depth 10m
185
110
-
Ile
TAT
[ENA]
¢þ
>WENV170925706
MDTG01088378
[MDTG] marine metagenome; seawater
41026
41101
+
Ile
TAT
[ENA]
¢þ
>WENV170928228
MDTG01130022
[MDTG] marine metagenome; seawater
744
670
-
Ile
TAT
[ENA]
¢þ
>WENV002986
AACY020081372
Marine microbial communities from Global Ocean Sampling (GOS)
1413
1335
-
Ile
TAT
[ENA]
>WENV031419
AACY021365732
Marine microbial communities from Global Ocean Sampling (GOS)
411
489
+
Ile
TAT
[ENA]
>WENV038657
AACY021951252
Marine microbial communities from Global Ocean Sampling (GOS)
493
415
-
Ile
TAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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