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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.149504 (26 seq.)
>A171001075
CP001857
Euryarchaeota
Archaeoglobus profundus DSM 5631 [CP001857]
817572
817646
+
Lys
TTT
-
¡û
>A171001243
CP001899
Euryarchaeota
Ferroglobus placidus DSM 10642 [CP001899]
670534
670461
-
Lys
TTT
-
¡û
>A171003682
CP005290
Euryarchaeota
Archaeoglobus sulfaticallidus PM70-1 [CP005290]
649372
649298
-
Lys
TTT
-
¡û
>A171003819
CP006577
Euryarchaeota
Archaeoglobus fulgidus DSM 8774 [CP006577]
1858350
1858423
+
Lys
TTT
-
¡û
>A171005683
CP009552
Euryarchaeota
Geoglobus acetivorans SBH6 [CP009552]
1213495
1213421
-
Lys
TTT
-
¡û
>A171006138
CP011267
Euryarchaeota
Geoglobus ahangari 234 [CP011267]
885873
885800
-
Lys
TTT
-
¡û
>WENV180287418
OBIK01049230
[OBIK] hydrothermal vent metagenome; sea water
200
274
+
Lys
TTT
[ENA]
¢þ
>WENV180288187
OBIL01079769
[OBIL] metagenome; hydrothermal vent
234
160
-
Lys
TTT
[ENA]
¢þ
>WENV180583829
OCNB01232769
[OCNB] metagenome; diffuse fluid
34
108
+
Lys
TTT
[ENA]
¢þ
>WENV181212921
OFBU01001304
[OFBU] metagenome; hydrothermal vent
1222
1148
-
Lys
TTT
[ENA]
¢þ
>WENV181213536
OFBV01006827
[OFBV] metagenome; hydrothermal vent
349
275
-
Lys
TTT
[ENA]
¢þ
>WENV181213869
OFBW01001301
[OFBW] metagenome; hydrothermal vent
724
650
-
Lys
TTT
[ENA]
¢þ
>WENV181214687
OFBY01007263
[OFBY] metagenome; hydrothermal vent
497
571
+
Lys
TTT
[ENA]
¢þ
>WENV181215077
OFBZ01002552
[OFBZ] metagenome; hydrothermal vent
831
757
-
Lys
TTT
[ENA]
¢þ
>WENV181215866
OFCA01027387
[OFCA] metagenome; hydrothermal vent
473
399
-
Lys
TTT
[ENA]
¢þ
>WENV181216024
OFCB01001589
[OFCB] metagenome; hydrothermal vent
1729
1803
+
Lys
TTT
[ENA]
¢þ
>WENV181408867
OGCH01018528
[OGCH] hot springs metagenome; hot springs
298
371
+
Lys
TTT
[ENA]
¢þ
>At0619
AE000782
Euryarchaeota
Archaeoglobus fulgidus DSM 4304 [AE000782]
1696296
1696369
+
Lys
TTT
[Ensembl]
¡û
>WENV170675806
LDZQ01000585
[LDZQ] terrestrial metagenome; oil reservoir sample I2
39706
39633
-
Lys
TTT
[ENA]
¢þ
>WENV170676375
LDZR01002363
[LDZR] terrestrial metagenome; oil reservoir sample K2
2380
2453
+
Lys
TTT
[ENA]
¢þ
>WENV170779098
LZCG01000816
[LZCG] oil field metagenome; sample BH-FW-1 from oil reservoir
3310
3237
-
Lys
TTT
[ENA]
¢þ
>WENV170779266
LZQN01000096
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
15730
15657
-
Lys
TTT
[ENA]
¢þ
>W1910200375
FJNF01000181
Euryarchaeota
Archaeoglobus fulgidus [FJNF]
472
545
+
Lys
TTT
[ENA]
¡û
>W1610001608
ACYZ01000013
Euryarchaeota
Ferroglobus placidus DSM 10642 [ACYZ]
38796
38723
-
Lys
TTT
[ENA]
¡û
>W1610612333
LGEQ01000012
Euryarchaeota
Archaeoglobus fulgidus [LGEQ]
39706
39633
-
Lys
TTT
[ENA]
¡û
>W1610612593
LGEX01000005
Euryarchaeota
Archaeoglobus fulgidus [LGEX]
2380
2453
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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