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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.149517 (101 seq.)
>W1710836205
LLKQ01000001
Campylobacterota
Aliarcobacter thereius LMG 24486 [LLKQ]
869249
869325
+
Thr
TGT
[ENA]
¡û
>W1710836226
LLKQ01000001
Campylobacterota
Aliarcobacter thereius LMG 24486 [LLKQ]
1067889
1067813
-
Thr
TGT
[ENA]
¡û
>WENV180391215
OBPM01042886
[OBPM] marine metagenome; ENVO:00002010
169
93
-
Thr
TGT
[ENA]
¢þ
>W141289894
JARS01000027
Campylobacterota
Aliarcobacter faecis AF1078 [JARS]
21904
21980
+
Thr
TGT
[ENA]
¡û
>W141289946
JART01000024
Campylobacterota
Arcobacter sp. AF1028 [JART]
21904
21980
+
Thr
TGT
[ENA]
¡û
>WENV183706971
PDWI01006156
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
9776
9700
-
Thr
TGT
[ENA]
¢þ
>WENV183708307
PDWI01014581
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4891
4967
+
Thr
TGT
[ENA]
¢þ
>WENV183708824
PDWI01020239
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1072
1148
+
Thr
TGT
[ENA]
¢þ
>WENV183710992
PDWI01058138
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
95
19
-
Thr
TGT
[ENA]
¢þ
>WENV183711409
PDWI01069034
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2679
2755
+
Thr
TGT
[ENA]
¢þ
>WENV183713317
PDWI01133910
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1574
1498
-
Thr
TGT
[ENA]
¢þ
>WENV183714266
PDWI01175657
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
524
600
+
Thr
TGT
[ENA]
¢þ
>WENV183719436
PDWJ01014112
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
8121
8197
+
Thr
TGT
[ENA]
¢þ
>WENV183719652
PDWJ01017959
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
312
236
-
Thr
TGT
[ENA]
¢þ
>WENV183721238
PDWJ01060381
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
3
79
+
Thr
TGT
[ENA]
¢þ
>WENV170704838
LLEN01003072
[LLEN] bioreactor metagenome; day86 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
515
439
-
Thr
TGT
[ENA]
¢þ
>WENV170779314
LZQN01000359
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
1057
1133
+
Thr
TGT
[ENA]
¢þ
>C181196954
CP031217
Campylobacterota
Halarcobacter bivalviorum LMG 26154 [CP031217]
1317695
1317619
-
Thr
TGT
-
¡û
>C181197009
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
1359729
1359653
-
Thr
TGT
-
¡û
>C181199815
CP031367
Campylobacterota
Aliarcobacter trophiarum LMG 25534 [CP031367]
1505721
1505645
-
Thr
TGT
-
¡û
>C191084475
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
180869
180945
+
Thr
TGT
-
¡û
>C191084494
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
2311403
2311327
-
Thr
TGT
-
¡û
>C191084506
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
1427893
1427817
-
Thr
TGT
-
¡û
>C191095018
CP032823
Campylobacterota
Aliarcobacter cryaerophilus ATCC 43158 [CP032823]
446069
446145
+
Thr
TGT
-
¡û
>C191147093
CP035926
Campylobacterota
Aliarcobacter thereius LMG 24486 [CP035926]
1293683
1293759
+
Thr
TGT
-
¡û
>C191147104
CP035926
Campylobacterota
Aliarcobacter thereius LMG 24486 [CP035926]
1492218
1492142
-
Thr
TGT
-
¡û
>C191149074
CP036246
Campylobacterota
Arcobacter porcinus CCUG 56899 [CP036246]
1351659
1351735
+
Thr
TGT
-
¡û
>C191149085
CP036246
Campylobacterota
Arcobacter porcinus CCUG 56899 [CP036246]
1579680
1579604
-
Thr
TGT
-
¡û
>C191186408
CP041070
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [CP041070]
2492143
2492067
-
Thr
TGT
-
¡û
>C191186423
CP041070
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [CP041070]
1506975
1506899
-
Thr
TGT
-
¡û
>W1911424174
NXFY01000008
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
54575
54651
+
Thr
TGT
[ENA]
¡û
>W1911424189
NXFY01000025
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
19154
19078
-
Thr
TGT
[ENA]
¡û
>W1911424200
NXFY01000030
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
2968
2892
-
Thr
TGT
[ENA]
¡û
>W1911424345
NXGC01000004
Campylobacterota
Aliarcobacter cryaerophilus LMG 29976 [NXGC]
140860
140936
+
Thr
TGT
[ENA]
¡û
>W1911424433
NXGE01000005
Campylobacterota
Aliarcobacter cryaerophilus LMG 10210 [NXGE]
79439
79515
+
Thr
TGT
[ENA]
¡û
>W1911424554
NXGH01000008
Campylobacterota
Aliarcobacter cryaerophilus LMG 9871 [NXGH]
29466
29390
-
Thr
TGT
[ENA]
¡û
>W1911424607
NXGI01000056
Campylobacterota
Aliarcobacter cryaerophilus LMG 9065 [NXGI]
125958
126034
+
Thr
TGT
[ENA]
¡û
>W1911424685
NXGK01000036
Campylobacterota
Aliarcobacter cryaerophilus LMG 24291 [NXGK]
7379
7455
+
Thr
TGT
[ENA]
¡û
>W1911426220
NXIE01000001
Campylobacterota
Halarcobacter mediterraneus F156-34 [NXIE]
462288
462364
+
Thr
TGT
[ENA]
¡û
>W1911426242
NXIE01000005
Campylobacterota
Halarcobacter mediterraneus F156-34 [NXIE]
16186
16262
+
Thr
TGT
[ENA]
¡û
>W1911426288
NXIF01000036
Campylobacterota
Malaciobacter halophilus DSM 18005 [NXIF]
45409
45333
-
Thr
TGT
[ENA]
¡û
>W1911426434
NXII01000009
Campylobacterota
Arcobacter cloacae CECT 7834 [NXII]
104829
104753
-
Thr
TGT
[ENA]
¡û
>W1911576070
PDJS01000007
Campylobacterota
Aliarcobacter trophiarum CECT 7650 [PDJS]
68193
68117
-
Thr
TGT
[ENA]
¡û
>W1911576152
PDJU01000007
Campylobacterota
Arcobacter sp. F155 [PDJU]
155105
155029
-
Thr
TGT
[ENA]
¡û
>W1911576182
PDJV01000002
Campylobacterota
Arcobacter sp. F2176 [PDJV]
256556
256480
-
Thr
TGT
[ENA]
¡û
>W1911576217
PDJV01000012
Campylobacterota
Arcobacter sp. F2176 [PDJV]
17114
17190
+
Thr
TGT
[ENA]
¡û
>W1911576286
PDJX01000004
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
170197
170121
-
Thr
TGT
[ENA]
¡û
>W1911576302
PDJX01000010
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
54584
54660
+
Thr
TGT
[ENA]
¡û
>W1911576323
PDJX01000025
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
19693
19769
+
Thr
TGT
[ENA]
¡û
>W1911576485
PDKC01000004
Campylobacterota
Arcobacter sp. CECT 8985 [PDKC]
63146
63070
-
Thr
TGT
[ENA]
¡û
>W1911576539
PDKD01000006
Campylobacterota
Aliarcobacter trophiarum LMG 25534 [PDKD]
42125
42201
+
Thr
TGT
[ENA]
¡û
>W1911576586
PDKE01000008
Campylobacterota
Arcobacter sp. CECT 8989 [PDKE]
134125
134049
-
Thr
TGT
[ENA]
¡û
>W1911576657
PDKG01000003
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
280766
280690
-
Thr
TGT
[ENA]
¡û
>W1911576674
PDKG01000007
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
66905
66981
+
Thr
TGT
[ENA]
¡û
>W1911576689
PDKG01000016
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
19674
19750
+
Thr
TGT
[ENA]
¡û
>W1911576869
PDKL01000004
Campylobacterota
Halarcobacter bivalviorum F118-4 [PDKL]
235454
235378
-
Thr
TGT
[ENA]
¡û
>W1911576878
PDKL01000006
Campylobacterota
Halarcobacter bivalviorum F118-4 [PDKL]
171307
171231
-
Thr
TGT
[ENA]
¡û
>W1911576908
PDKM01000001
Campylobacterota
Halarcobacter bivalviorum CECT 7835 [PDKM]
668109
668033
-
Thr
TGT
[ENA]
¡û
>W1911576955
PDKN01000002
Campylobacterota
Candidatus Marinarcus aquaticus CECT 8987 [PDKN]
162342
162266
-
Thr
TGT
[ENA]
¡û
>W1911576970
PDKN01000006
Campylobacterota
Candidatus Marinarcus aquaticus CECT 8987 [PDKN]
18823
18899
+
Thr
TGT
[ENA]
¡û
>W1911577005
PDKO01000003
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [PDKO]
105439
105363
-
Thr
TGT
[ENA]
¡û
>W1911577007
PDKO01000006
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [PDKO]
148768
148692
-
Thr
TGT
[ENA]
¡û
>W1911775188
QXMK01000012
Campylobacterota
Aliarcobacter butzleri 55 [QXMK]
406
330
-
Thr
TGT
[ENA]
¡û
>C10100562
CP001999
Campylobacterota
Arcobacter nitrofigilis DSM 7299 [CP001999]
2696095
2696171
+
Thr
TGT
[Ensembl]
¡û
>C10100570
CP001999
Campylobacterota
Arcobacter nitrofigilis DSM 7299 [CP001999]
2639588
2639512
-
Thr
TGT
[Ensembl]
¡û
>W1511517362
JXXG01000001
Campylobacterota
Halarcobacter anaerophilus IR-1 [JXXG]
105398
105474
+
Thr
TGT
[ENA]
¡û
>W1511517383
JXXG01000002
Campylobacterota
Halarcobacter anaerophilus IR-1 [JXXG]
254658
254734
+
Thr
TGT
[ENA]
¡û
>W1610584450
LCSK01000002
Campylobacterota
Arcobacter porcinus [LCSK]
95488
95564
+
Thr
TGT
[ENA]
¡û
>W1610584471
LCSK01000007
Campylobacterota
Arcobacter porcinus [LCSK]
92517
92593
+
Thr
TGT
[ENA]
¡û
>W1610584487
LCSL01000003
Campylobacterota
Arcobacter porcinus [LCSL]
112205
112281
+
Thr
TGT
[ENA]
¡û
>W1610584516
LCSL01000007
Campylobacterota
Arcobacter porcinus [LCSL]
70911
70987
+
Thr
TGT
[ENA]
¡û
>W1610584905
LCUH01000003
Campylobacterota
Aliarcobacter thereius [LCUH]
7894
7970
+
Thr
TGT
[ENA]
¡û
>W1610584923
LCUH01000006
Campylobacterota
Aliarcobacter thereius [LCUH]
81448
81524
+
Thr
TGT
[ENA]
¡û
>W1610584965
LCUI01000005
Campylobacterota
Arcobacter porcinus [LCUI]
69844
69768
-
Thr
TGT
[ENA]
¡û
>W1610584971
LCUI01000006
Campylobacterota
Arcobacter porcinus [LCUI]
126080
126004
-
Thr
TGT
[ENA]
¡û
>W1610585001
LCUJ01000002
Campylobacterota
Aliarcobacter thereius [LCUJ]
147942
147866
-
Thr
TGT
[ENA]
¡û
>W1610585016
LCUJ01000008
Campylobacterota
Aliarcobacter thereius [LCUJ]
22923
22847
-
Thr
TGT
[ENA]
¡û
>W1610585038
LCUK01000002
Campylobacterota
Aliarcobacter thereius [LCUK]
341177
341253
+
Thr
TGT
[ENA]
¡û
>W1610585057
LCUK01000005
Campylobacterota
Aliarcobacter thereius [LCUK]
132503
132579
+
Thr
TGT
[ENA]
¡û
>W1610586351
LDIR01000001
Campylobacterota
Arcobacter porcinus [LDIR]
330125
330201
+
Thr
TGT
[ENA]
¡û
>W1610586381
LDIR01000004
Campylobacterota
Arcobacter porcinus [LDIR]
71797
71721
-
Thr
TGT
[ENA]
¡û
>W1610586393
LDIS01000001
Campylobacterota
Aliarcobacter thereius [LDIS]
378580
378656
+
Thr
TGT
[ENA]
¡û
>W1610586429
LDIS01000004
Campylobacterota
Aliarcobacter thereius [LDIS]
210692
210768
+
Thr
TGT
[ENA]
¡û
>W1610699344
LLKQ01000001
Campylobacterota
Aliarcobacter thereius LMG 24486 [LLKQ]
869249
869325
+
Thr
TGT
[ENA]
¡û
>W1610699365
LLKQ01000001
Campylobacterota
Aliarcobacter thereius LMG 24486 [LLKQ]
1067889
1067813
-
Thr
TGT
[ENA]
¡û
>W1710703667
LCSK01000002
Campylobacterota
Arcobacter porcinus [LCSK]
95488
95564
+
Thr
TGT
[ENA]
¡û
>W1710703688
LCSK01000007
Campylobacterota
Arcobacter porcinus [LCSK]
92517
92593
+
Thr
TGT
[ENA]
¡û
>W1710703704
LCSL01000003
Campylobacterota
Arcobacter porcinus [LCSL]
112205
112281
+
Thr
TGT
[ENA]
¡û
>W1710703733
LCSL01000007
Campylobacterota
Arcobacter porcinus [LCSL]
70911
70987
+
Thr
TGT
[ENA]
¡û
>W1710704096
LCUH01000003
Campylobacterota
Aliarcobacter thereius [LCUH]
7894
7970
+
Thr
TGT
[ENA]
¡û
>W1710704114
LCUH01000006
Campylobacterota
Aliarcobacter thereius [LCUH]
81448
81524
+
Thr
TGT
[ENA]
¡û
>W1710704156
LCUI01000005
Campylobacterota
Arcobacter porcinus [LCUI]
69844
69768
-
Thr
TGT
[ENA]
¡û
>W1710704162
LCUI01000006
Campylobacterota
Arcobacter porcinus [LCUI]
126080
126004
-
Thr
TGT
[ENA]
¡û
>W1710704192
LCUJ01000002
Campylobacterota
Aliarcobacter thereius [LCUJ]
147942
147866
-
Thr
TGT
[ENA]
¡û
>W1710704207
LCUJ01000008
Campylobacterota
Aliarcobacter thereius [LCUJ]
22923
22847
-
Thr
TGT
[ENA]
¡û
>W1710704229
LCUK01000002
Campylobacterota
Aliarcobacter thereius [LCUK]
341177
341253
+
Thr
TGT
[ENA]
¡û
>W1710704248
LCUK01000005
Campylobacterota
Aliarcobacter thereius [LCUK]
132503
132579
+
Thr
TGT
[ENA]
¡û
>W1710705481
LDIR01000001
Campylobacterota
Arcobacter porcinus [LDIR]
330125
330201
+
Thr
TGT
[ENA]
¡û
>W1710705511
LDIR01000004
Campylobacterota
Arcobacter porcinus [LDIR]
71797
71721
-
Thr
TGT
[ENA]
¡û
>W1710705523
LDIS01000001
Campylobacterota
Aliarcobacter thereius [LDIS]
378580
378656
+
Thr
TGT
[ENA]
¡û
>W1710705559
LDIS01000004
Campylobacterota
Aliarcobacter thereius [LDIS]
210692
210768
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK