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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.150289 (49 seq.)
>W1710878749
LMRF01000001
Actinomycetota
Marmoricola sp. Leaf446 [LMRF]
814856
814935
+
Gln
TTG
[ENA]
¡û
>W1711125338
LUNF01000027
Actinomycetota
Aeromicrobium sp. REDSEA-S32_B7 [LUNF]
15451
15532
+
Gln
TTG
[ENA]
¡û
>W1711125392
LUNG01000036
Actinomycetota
Aeromicrobium sp. REDSEA-S35_B1 [LUNG]
1173
1092
-
Gln
TTG
[ENA]
¡û
>W1711125455
LUNH01000090
Actinomycetota
Aeromicrobium sp. REDSEA-S38_B2 [LUNH]
15449
15530
+
Gln
TTG
[ENA]
¡û
>W1711125493
LUNI01000022
Actinomycetota
Aeromicrobium sp. REDSEA-S42_B4 [LUNI]
1115
1034
-
Gln
TTG
[ENA]
¡û
>W1711125544
LUNJ01000039
Actinomycetota
Aeromicrobium sp. REDSEA-S44_B1 [LUNJ]
1159
1078
-
Gln
TTG
[ENA]
¡û
>W131226719
AUEP01000003
Actinomycetota
Marmoricola sp. URHB0036 [AUEP]
221904
221983
+
Gln
TTG
[ENA]
¡û
>C015190
CP000509
Actinomycetota
Nocardioides sp. JS614 [CP000509]
950002
950080
+
Gln
TTG
[Ensembl]
¡û
>W141091614
AUZE01000003
Actinomycetota
actinobacterium LLX17 [AUZE]
61757
61838
+
Gln
TTG
[ENA]
¡û
>WENV181295374
OFHI01029958
[OFHI] soil metagenome; Clay
345
426
+
Gln
TTG
[ENA]
¢þ
>WENV181311670
OFJB01007830
[OFJB] sludge metagenome; sludge
2335
2414
+
Gln
TTG
[ENA]
¢þ
>WENV170726108
LSQX01368194
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
262
182
-
Gln
TTG
[ENA]
¢þ
>WENV170729687
LULG01000317
[LULG] marine metagenome; Red Sea water column Station 169 - depth 200m
15449
15530
+
Gln
TTG
[ENA]
¢þ
>WENV170732123
LULI01015720
[LULI] marine metagenome; Red Sea water column Station 169 - depth 50m
553
472
-
Gln
TTG
[ENA]
¢þ
>WENV170732539
LULJ01000077
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
1173
1092
-
Gln
TTG
[ENA]
¢þ
>WENV170736211
LULM01000137
[LULM] marine metagenome; Red Sea water column Station 149 - depth 200m
15451
15532
+
Gln
TTG
[ENA]
¢þ
>WENV170738857
LULP01005747
[LULP] marine metagenome; Red Sea water column Station 149 - depth 25m
658
577
-
Gln
TTG
[ENA]
¢þ
>WENV170759056
LUMS01001547
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
4587
4668
+
Gln
TTG
[ENA]
¢þ
>WENV170759656
LUMT01000084
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
1115
1034
-
Gln
TTG
[ENA]
¢þ
>WENV170761355
LUMV01000046
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
1159
1078
-
Gln
TTG
[ENA]
¢þ
>WENV170762100
LUMW01000928
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
1162
1081
-
Gln
TTG
[ENA]
¢þ
>C191182461
CP040748
Actinomycetota
Nocardioides jishulii dk3136 [CP040748]
652911
652991
+
Gln
TTG
-
¡û
>C191186695
CP041091
Actinomycetota
Nocardioides sambongensis KUDC 5002 [CP041091]
4428817
4428896
+
Gln
TTG
-
¡û
>W141815872
JQJL01000017
Actinomycetota
Nocardioides sp. UNC345MFTsu5.1 [JQJL]
97231
97310
+
Gln
TTG
[ENA]
¡û
>W1910181538
BJMC01000011
Actinomycetota
Pimelobacter simplex NBRC 12069 [BJMC]
177769
177690
-
Gln
TTG
[ENA]
¡û
>W1911672097
QGDD01000001
Actinomycetota
Nocardioides silvaticus CCTCC AB 2018079 [QGDD]
940292
940211
-
Gln
TTG
[ENA]
¡û
>W1911693688
QLVF01000081
Actinomycetota
Aeromicrobium lacus CPCC 204604 [QLVF]
4318
4237
-
Gln
TTG
[ENA]
¡û
>W1810675416
QKKY01000081
Actinomycetota
Aeromicrobium sp. IBM16_104W [QKKY]
4318
4237
-
Gln
TTG
[ENA]
¡û
>C151061346
CP009896
Actinomycetota
Pimelobacter simplex VKM Ac-2033D [CP009896]
4448716
4448637
-
Gln
TTG
[Ensembl]
¡û
>W1510061627
CCYM01000002
Actinomycetota
Nigerium massiliense SIT7 [CCYM]
221364
221285
-
Gln
TTG
[ENA]
¡û
>C11114903
AP012204
Actinomycetota
Microlunatus phosphovorus NM-1 [AP012204]
4806091
4806010
-
Gln
TTG
[Ensembl]
¡û
>W11125300
ADVI01000061
Actinomycetota
Nocardioidaceae bacterium Broad-1 [ADVI]
104488
104567
+
Gln
TTG
[ENA]
¡û
>C161036381
CP011502
Actinomycetota
Aeromicrobium erythreum AR18 [CP011502]
992325
992406
+
Gln
TTG
[Ensembl]
¡û
>W1610027086
AVPI01000034
Actinomycetota
Knoellia flava TL1 [AVPI]
37693
37612
-
Gln
TTG
[ENA]
¡û
>W1610049595
BBFC01001165
Actinomycetota
Nocardioides sp. JCM 18999 [BBFC]
537
458
-
Gln
TTG
[ENA]
¡û
>W1610050755
BBGE01000394
Actinomycetota
Nocardioides nitrophenolicus JCM 10703 [BBGE]
826
905
+
Gln
TTG
[ENA]
¡û
>W1610051054
BBGL01000499
Actinomycetota
Nocardioides aromaticivorans JCM 11674 [BBGL]
890
968
+
Gln
TTG
[ENA]
¡û
>W1610741095
LMRF01000001
Actinomycetota
Marmoricola sp. Leaf446 [LMRF]
814856
814935
+
Gln
TTG
[ENA]
¡û
>W1610936271
LUNF01000027
Actinomycetota
Aeromicrobium sp. REDSEA-S32_B7 [LUNF]
15451
15532
+
Gln
TTG
[ENA]
¡û
>W1610936325
LUNG01000036
Actinomycetota
Aeromicrobium sp. REDSEA-S35_B1 [LUNG]
1173
1092
-
Gln
TTG
[ENA]
¡û
>W1610936388
LUNH01000090
Actinomycetota
Aeromicrobium sp. REDSEA-S38_B2 [LUNH]
15449
15530
+
Gln
TTG
[ENA]
¡û
>W1610936426
LUNI01000022
Actinomycetota
Aeromicrobium sp. REDSEA-S42_B4 [LUNI]
1115
1034
-
Gln
TTG
[ENA]
¡û
>W1610936477
LUNJ01000039
Actinomycetota
Aeromicrobium sp. REDSEA-S44_B1 [LUNJ]
1159
1078
-
Gln
TTG
[ENA]
¡û
>W1710023251
AVPI01000034
Actinomycetota
Knoellia flava TL1 [AVPI]
37693
37612
-
Gln
TTG
[ENA]
¡û
>W1710045994
BBFC01001165
Actinomycetota
Nocardioides sp. JCM 18999 [BBFC]
537
458
-
Gln
TTG
[ENA]
¡û
>W1710047154
BBGE01000394
Actinomycetota
Nocardioides nitrophenolicus JCM 10703 [BBGE]
826
905
+
Gln
TTG
[ENA]
¡û
>W1710047453
BBGL01000499
Actinomycetota
Nocardioides aromaticivorans JCM 11674 [BBGL]
890
968
+
Gln
TTG
[ENA]
¡û
>W1710534308
FNRT01000002
Actinomycetota
Nocardioides exalbidus [FNRT]
499685
499606
-
Gln
TTG
[ENA]
¡û
>W1710569394
FOUK01000001
Actinomycetota
Pimelobacter simplex [FOUK]
919754
919833
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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