This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.150294 (37 seq.)
>C171127303
CP021987
Mycoplasmatota
Ureaplasma parvum hebnu3h04 [CP021987]
684339
684420
+
Leu
CAA
-
¡û
>C171127339
CP021988
Mycoplasmatota
Ureaplasma parvum hebnu3h05 [CP021988]
49433
49352
-
Leu
CAA
-
¡û
>C171127340
CP021989
Mycoplasmatota
Ureaplasma parvum hebnu3h07 [CP021989]
69006
69087
+
Leu
CAA
-
¡û
>C171127392
CP021990
Mycoplasmatota
Ureaplasma parvum hebnu1229 [CP021990]
91447
91366
-
Leu
CAA
-
¡û
>C171127412
CP021991
Mycoplasmatota
Ureaplasma parvum hebnu uu3 [CP021991]
568217
568136
-
Leu
CAA
-
¡û
>C026084
AF222894
Mycoplasmatota
Ureaplasma parvum [AF222894]
476185
476104
-
Leu
CAA
[Ensembl]
¡û
>w025448
AAZT01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 12 [AAZT]
593544
593627
+
Leu
CAA
[ENA]
¡û
>w025422
AAZS01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 11 [AAZS]
57964
57881
-
Leu
CAA
[ENA]
¡û
>w025380
AAZR01000002
Mycoplasmatota
Ureaplasma urealyticum serovar 5 [AAZR]
117628
117545
-
Leu
CAA
[ENA]
¡û
>w025367
AAZQ01000001
Mycoplasmatota
Ureaplasma parvum serovar 6 [AAZQ]
417688
417771
+
Leu
CAA
[ENA]
¡û
>w024333
AAYQ01000003
Mycoplasmatota
Ureaplasma urealyticum serovar 9 [AAYQ]
56677
56760
+
Leu
CAA
[ENA]
¡û
>w024322
AAYP01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 7 [AAYP]
33356
33273
-
Leu
CAA
[ENA]
¡û
>w024298
AAYO01000005
Mycoplasmatota
Ureaplasma urealyticum serovar 4 [AAYO]
9087
9170
+
Leu
CAA
[ENA]
¡û
>w024273
AAYN01000004
Mycoplasmatota
Ureaplasma urealyticum serovar 8 [AAYN]
32739
32822
+
Leu
CAA
[ENA]
¡û
>w024238
AAYM01000001
Mycoplasmatota
Ureaplasma parvum serovar 3 [AAYM]
23003
22920
-
Leu
CAA
[ENA]
¡û
>WENV180225668
OBBO01000003
[OBBO] human gut metagenome; Infant 2 DOL 5 gut
280873
280954
+
Leu
CAA
[ENA]
¢þ
>WENV180554114
OCJM01000611
[OCJM] human gut metagenome; Infant 2 DOL 6 gut
757
676
-
Leu
CAA
[ENA]
¢þ
>WENV180822757
ODJV01000212
[ODJV] human metagenome; G_DNA_Posterior fornix
1145
1226
+
Leu
CAA
[ENA]
¢þ
>W08002237
ABER01000001
Mycoplasmatota
Ureaplasma parvum serovar 14 str. ATCC 33697 [ABER]
53735
53657
-
Leu
CAA
[ENA]
¡û
>W08002272
ABES01000001
Mycoplasmatota
Ureaplasma parvum serovar 1 str. ATCC 27813 [ABES]
49457
49379
-
Leu
CAA
[ENA]
¡û
>W08002290
ABET01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 10 [ABET]
810375
810456
+
Leu
CAA
[ENA]
¡û
>W08002321
ABEV01000002
Mycoplasmatota
Ureaplasma urealyticum serovar 13 str. ATCC 33698 [ABEV]
176074
176155
+
Leu
CAA
[ENA]
¡û
>W08002830
ABFL01000002
Mycoplasmatota
Ureaplasma urealyticum serovar 2 [ABFL]
151254
151335
+
Leu
CAA
[ENA]
¡û
>C08011109
CP000942
Mycoplasmatota
Ureaplasma parvum serovar 3 str. ATCC 27815 [CP000942]
476169
476091
-
Leu
CAA
[Ensembl]
¡û
>C191003529
AP018561
Mycoplasmatota
Ureaplasma parvum serovar 3 OMC-P162 [AP018561]
300250
300169
-
Leu
CAA
-
¡û
>C09110794
CP001184
Mycoplasmatota
Ureaplasma urealyticum serovar 10 str. ATCC 33699 [CP001184]
508696
508615
-
Leu
CAA
[Ensembl]
¡û
>W1911824651
QZWO01000012
Mycoplasmatota
Ureaplasma urealyticum 445 [QZWO]
610
691
+
Leu
CAA
[ENA]
¡û
>W1810735663
QOKT01000007
Mycoplasmatota
Ureaplasma urealyticum 1000 [QOKT]
63953
63872
-
Leu
CAA
[ENA]
¡û
>W1810735689
QOKU01000087
Mycoplasmatota
Ureaplasma urealyticum 1051 [QOKU]
9117
9036
-
Leu
CAA
[ENA]
¡û
>W1810757239
QPHI01000061
Mycoplasmatota
Ureaplasma parvum 445a [QPHI]
20565
20484
-
Leu
CAA
[ENA]
¡û
>W1810757265
QPHJ01000067
Mycoplasmatota
Ureaplasma urealyticum 1000a [QPHJ]
93
12
-
Leu
CAA
[ENA]
¡û
>W1810757291
QPHK01000102
Mycoplasmatota
Ureaplasma parvum 1051a [QPHK]
8375
8294
-
Leu
CAA
[ENA]
¡û
>C151002392
AP014584
Mycoplasmatota
Ureaplasma parvum serovar 3 SV3F4 [AP014584]
447735
447816
+
Leu
CAA
[Ensembl]
¡û
>W121060646
AJFX01000007
Mycoplasmatota
Ureaplasma urealyticum 2033 [AJFX]
46381
46300
-
Leu
CAA
[ENA]
¡û
>W121060698
AJFY01000013
Mycoplasmatota
Ureaplasma urealyticum 2608 [AJFY]
52877
52958
+
Leu
CAA
[ENA]
¡û
>W121060725
AJFZ01000017
Mycoplasmatota
Ureaplasma urealyticum 4155 [AJFZ]
49742
49661
-
Leu
CAA
[ENA]
¡û
>W121060752
AJGA01000015
Mycoplasmatota
Ureaplasma urealyticum 4318 [AJGA]
11643
11562
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK