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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.150300 (72 seq.)
>W1710872270
LMLV01000032
Bacillota
Paenibacillus sp. Leaf72 [LMLV]
1616
1694
+
Leu
CAA
[ENA]
¡û
>W1710879643
LMRV01000026
Bacillota
Paenibacillus sp. Soil522 [LMRV]
118979
118898
-
Leu
CAA
[ENA]
¡û
>W1710879663
LMRV01000028
Bacillota
Paenibacillus sp. Soil522 [LMRV]
118932
118851
-
Leu
CAA
[ENA]
¡û
>W1711309576
MAQX01000002
Bacillota
Bacillus sp. FJAT-26390 [MAQX]
198081
198000
-
Leu
CAA
[ENA]
¡û
>W1711309595
MAQX01000011
Bacillota
Bacillus sp. FJAT-26390 [MAQX]
1249396
1249315
-
Leu
CAA
[ENA]
¡û
>W131239104
BALG01000016
Bacillota
Paenibacillus popilliae ATCC 14706 [BALG]
2585
2665
+
Leu
CAA
[ENA]
¡û
>W1711676961
MRTD01000074
Bacillota
Paenibacillus sp. FSL A5-0031 [MRTD]
82
1
-
Leu
CAA
[ENA]
¡û
>W1711677255
MRTK01000001
Bacillota
Paenibacillus sp. FSL H8-0548 [MRTK]
340748
340667
-
Leu
CAA
[ENA]
¡û
>W1711677273
MRTK01000050
Bacillota
Paenibacillus sp. FSL H8-0548 [MRTK]
51888
51806
-
Leu
CAA
[ENA]
¡û
>W1711827003
MXQD01000038
Bacillota
Paenibacillus sp. MY03 [MXQD]
642
723
+
Leu
CAA
[ENA]
¡û
>W1711979226
NDGK01000010
Bacillota
Paenibacillus thiaminolyticus [NDGK]
207086
207005
-
Leu
CAA
[ENA]
¡û
>W1711979259
NDGK01000021
Bacillota
Paenibacillus thiaminolyticus [NDGK]
168957
168876
-
Leu
CAA
[ENA]
¡û
>W131234927
AULE01000011
Bacillota
Paenibacillus taiwanensis DSM 18679 [AULE]
177
258
+
Leu
CAA
[ENA]
¡û
>W131234968
AULE01000025
Bacillota
Paenibacillus taiwanensis DSM 18679 [AULE]
24048
24129
+
Leu
CAA
[ENA]
¡û
>W131235764
AULV01000006
Bacillota
Paenibacillus harenae DSM 16969 [AULV]
486215
486134
-
Leu
CAA
[ENA]
¡û
>W141080313
ATMT01000022
Bacillota
Paenibacillus alvei TS-15 [ATMT]
1336
1255
-
Leu
CAA
[ENA]
¡û
>W08007949
ABKS01000010
Bacillota
Paenibacillus sp. JDR-2 [ABKS]
2994
3075
+
Leu
CAA
[ENA]
¡û
>WENV181801263
OGSB01000024
[OGSB] human gut metagenome; fecal sample 5 from infant 3
851
932
+
Leu
CAA
[ENA]
¢þ
>WENV181801352
OGSB01000112
[OGSB] human gut metagenome; fecal sample 5 from infant 3
69932
69851
-
Leu
CAA
[ENA]
¢þ
>WENV181810422
OGSV01000040
[OGSV] human gut metagenome; fecal sample 4 from infant 3
1086
1167
+
Leu
CAA
[ENA]
¢þ
>WENV181810506
OGSV01000130
[OGSV] human gut metagenome; fecal sample 4 from infant 3
69849
69768
-
Leu
CAA
[ENA]
¢þ
>WENV181822759
OGUH01000026
[OGUH] human gut metagenome; fecal sample 3 from infant 3
672
753
+
Leu
CAA
[ENA]
¢þ
>W141251615
CBQR020000167
Bacillota
Gorillibacterium massiliense G5 [CBQR]
1640
1721
+
Leu
CAA
[ENA]
¡û
>C181021430
CP016808
Bacillota
Paenibacillus sp. BIHB 4019 [CP016808]
3585735
3585813
+
Leu
CAA
-
¡û
>C191007141
AP019308
Bacillota
Paenibacillus baekrokdamisoli KCTC 33723 [AP019308]
6817889
6817970
+
Leu
CAA
-
¡û
>C191125246
CP034437
Bacillota
Paenibacillus albus 18JY67-1 [CP034437]
6296688
6296607
-
Leu
CAA
-
¡û
>C191143929
CP035492
Bacillota
Paenibacillus protaetiae FW100M-2 [CP035492]
2332981
2332903
-
Leu
CAA
-
¡û
>W1910018463
BDQX01000047
Bacillota
Paenibacillus agaridevorans T-3040 [BDQX]
78
159
+
Leu
CAA
[ENA]
¡û
>W1910154669
BILY01000002
Bacillota
Paenibacillus glycanilyticus NBRC 16618 [BILY]
291469
291388
-
Leu
CAA
[ENA]
¡û
>W1910154725
BILZ01000043
Bacillota
Paenibacillus kobensis NBRC 15729 [BILZ]
51469
51388
-
Leu
CAA
[ENA]
¡û
>W1910155140
BIMI01000003
Bacillota
Paenibacillus thiaminolyticus NBRC 15656 [BIMI]
176722
176641
-
Leu
CAA
[ENA]
¡û
>W1910155163
BIMI01000094
Bacillota
Paenibacillus thiaminolyticus NBRC 15656 [BIMI]
15
96
+
Leu
CAA
[ENA]
¡û
>C09108216
CP001656
Bacillota
Paenibacillus sp. JDR-2 [CP001656]
1316489
1316570
+
Leu
CAA
[Ensembl]
¡û
>W1910940486
NJAR01000004
Bacillota
Paenibacillus castaneae DSM 19417 [NJAR]
42913
42993
+
Leu
CAA
[ENA]
¡û
>W1910940535
NJAR01000010
Bacillota
Paenibacillus castaneae DSM 19417 [NJAR]
1866437
1866356
-
Leu
CAA
[ENA]
¡û
>W1911779679
QXQA01000006
Bacillota
Paenibacillus nanensis DSM 22867 [QXQA]
286703
286622
-
Leu
CAA
[ENA]
¡û
>W1911809789
QYZD01000026
Bacillota
Paenibacillus thiaminolyticus BO5 [QYZD]
69806
69725
-
Leu
CAA
[ENA]
¡û
>W1911809806
QYZD01000032
Bacillota
Paenibacillus thiaminolyticus BO5 [QYZD]
1436
1517
+
Leu
CAA
[ENA]
¡û
>W1911810902
QZCF01000001
Bacillota
Paenibacillus sp. 1011MAR3C5 [QZCF]
1062311
1062230
-
Leu
CAA
[ENA]
¡û
>W1810608939
QGTQ01000047
Bacillota
Paenibacillus cellulosilyticus CECT 5696 [QGTQ]
26699
26618
-
Leu
CAA
[ENA]
¡û
>W1810671906
QJTA01000014
Bacillota
Paenibacillus sp. OV191 [QJTA]
776
857
+
Leu
CAA
[ENA]
¡û
>W1810671941
QJTA01000037
Bacillota
Paenibacillus sp. OV191 [QJTA]
20153
20072
-
Leu
CAA
[ENA]
¡û
>W1810683207
QKVW01000009
Bacillota
Paenibacillus dendritiformis PV3-16 [QKVW]
1408
1489
+
Leu
CAA
[ENA]
¡û
>W1810683250
QKVW01000144
Bacillota
Paenibacillus dendritiformis PV3-16 [QKVW]
10531
10450
-
Leu
CAA
[ENA]
¡û
>W1810697158
QLUW01000001
Bacillota
Paenibacillus montanisoli RA17 [QLUW]
1647
1728
+
Leu
CAA
[ENA]
¡û
>W1810701719
QMFA01000027
Bacillota
Paenibacillus sp. YN15 [QMFA]
69390
69469
+
Leu
CAA
[ENA]
¡û
>W1810759095
QPJD01000019
Bacillota
Paenibacillus prosopidis CECT 7506 [QPJD]
1588
1669
+
Leu
CAA
[ENA]
¡û
>W1810860980
QTTN01000083
Bacillota
Paenibacillus taihuensis CGMCC 1.10966 [QTTN]
1013
1094
+
Leu
CAA
[ENA]
¡û
>C151048095
CP009286
Bacillota
Paenibacillus stellifer DSM 14472 [CP009286]
4770467
4770386
-
Leu
CAA
[Ensembl]
¡û
>C151075970
CP011058
Bacillota
Paenibacillus beijingensis DSM 24997 [CP011058]
699200
699119
-
Leu
CAA
[Ensembl]
¡û
>W10126267
AEDD01000003
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
259484
259403
-
Leu
CAA
[ENA]
¡û
>W1511185338
JMDX01000335
Bacillota
Paenibacillus sp. E194 [JMDX]
3586
3505
-
Leu
CAA
[ENA]
¡û
>W11133528
AEDD01000003
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
259484
259403
-
Leu
CAA
[ENA]
¡û
>W1511577193
LAQO01000018
Bacillota
Paenibacillus algorifonticola XJ259 [LAQO]
188369
188291
-
Leu
CAA
[ENA]
¡û
>W1511698255
LGHP01000001
Bacillota
Bacillus sp. FJAT-28004 [LGHP]
2960205
2960124
-
Leu
CAA
[ENA]
¡û
>W1511698279
LGHP01000003
Bacillota
Bacillus sp. FJAT-28004 [LGHP]
2294
2375
+
Leu
CAA
[ENA]
¡û
>W1610095276
CYUM01000001
Bacillota
Gorillibacterium timonense SN4 [CYUM]
2069
1990
-
Leu
CAA
[ENA]
¡û
>W121034228
AHKH01000010
Bacillota
Paenibacillus dendritiformis C454 [AHKH]
93615
93534
-
Leu
CAA
[ENA]
¡û
>W121034240
AHKH01000117
Bacillota
Paenibacillus dendritiformis C454 [AHKH]
10974
10893
-
Leu
CAA
[ENA]
¡û
>W121112109
ALKF01000198
Bacillota
Paenibacillus sp. OSY-SE [ALKF]
166466
166385
-
Leu
CAA
[ENA]
¡û
>W1610734616
LMLV01000032
Bacillota
Paenibacillus sp. Leaf72 [LMLV]
1616
1694
+
Leu
CAA
[ENA]
¡û
>W1610741989
LMRV01000026
Bacillota
Paenibacillus sp. Soil522 [LMRV]
118979
118898
-
Leu
CAA
[ENA]
¡û
>W1610742009
LMRV01000028
Bacillota
Paenibacillus sp. Soil522 [LMRV]
118932
118851
-
Leu
CAA
[ENA]
¡û
>W1611057233
MAQX01000002
Bacillota
Bacillus sp. FJAT-26390 [MAQX]
198081
198000
-
Leu
CAA
[ENA]
¡û
>W1611057252
MAQX01000011
Bacillota
Bacillus sp. FJAT-26390 [MAQX]
1249396
1249315
-
Leu
CAA
[ENA]
¡û
>W1710098071
CYUM01000001
Bacillota
Gorillibacterium timonense SN4 [CYUM]
2069
1990
-
Leu
CAA
[ENA]
¡û
>W1710529225
FNNV01000002
Bacillota
Paenibacillus sp. CF384 [FNNV]
396716
396635
-
Leu
CAA
[ENA]
¡û
>W1710546734
FOCJ01000012
Bacillota
Paenibacillus sp. OV219 [FOCJ]
182409
182328
-
Leu
CAA
[ENA]
¡û
>W1710559598
FOMT01000003
Bacillota
Paenibacillus catalpae [FOMT]
270
351
+
Leu
CAA
[ENA]
¡û
>W1710560624
FONN01000013
Bacillota
Paenibacillus algorifonticola [FONN]
1907
1985
+
Leu
CAA
[ENA]
¡û
>W1710565370
FORE01000008
Bacillota
Paenibacillus sp. UNC496MF [FORE]
1819
1900
+
Leu
CAA
[ENA]
¡û
>W1710576602
FPAD01000001
Bacillota
Paenibacillus sp. BC26 [FPAD]
1644
1725
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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