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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.150540 (47 seq.)
>C171127306
CP021987
Mycoplasmatota
Ureaplasma parvum hebnu3h04 [CP021987]
224900
224824
-
Ile
GAT
-
¡û
>C171127315
CP021988
Mycoplasmatota
Ureaplasma parvum hebnu3h05 [CP021988]
503881
503957
+
Ile
GAT
-
¡û
>C171127359
CP021989
Mycoplasmatota
Ureaplasma parvum hebnu3h07 [CP021989]
337826
337750
-
Ile
GAT
-
¡û
>C171127368
CP021990
Mycoplasmatota
Ureaplasma parvum hebnu1229 [CP021990]
555707
555783
+
Ile
GAT
-
¡û
>C171127394
CP021991
Mycoplasmatota
Ureaplasma parvum hebnu uu3 [CP021991]
295376
295452
+
Ile
GAT
-
¡û
>C013887
BA000026
Mycoplasmatota
Malacoplasma penetrans HF-2 [BA000026]
291269
291345
+
Ile
GAT
[Ensembl]
¡û
>C026059
AF222894
Mycoplasmatota
Ureaplasma parvum [AF222894]
188044
188120
+
Ile
GAT
[Ensembl]
¡û
>w025451
AAZT01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 12 [AAZT]
71956
71878
-
Ile
GAT
[ENA]
¡û
>w025424
AAZS01000002
Mycoplasmatota
Ureaplasma urealyticum serovar 11 [AAZS]
71207
71129
-
Ile
GAT
[ENA]
¡û
>w025378
AAZR01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 5 [AAZR]
229075
229153
+
Ile
GAT
[ENA]
¡û
>w025375
AAZQ01000002
Mycoplasmatota
Ureaplasma parvum serovar 6 [AAZQ]
140363
140285
-
Ile
GAT
[ENA]
¡û
>w024335
AAYQ01000007
Mycoplasmatota
Ureaplasma urealyticum serovar 9 [AAYQ]
24408
24330
-
Ile
GAT
[ENA]
¡û
>w024324
AAYP01000002
Mycoplasmatota
Ureaplasma urealyticum serovar 7 [AAYP]
47486
47564
+
Ile
GAT
[ENA]
¡û
>w024297
AAYO01000003
Mycoplasmatota
Ureaplasma urealyticum serovar 4 [AAYO]
71335
71257
-
Ile
GAT
[ENA]
¡û
>w024277
AAYN01000053
Mycoplasmatota
Ureaplasma urealyticum serovar 8 [AAYN]
136
58
-
Ile
GAT
[ENA]
¡û
>w024275
AAYN01000007
Mycoplasmatota
Ureaplasma urealyticum serovar 8 [AAYN]
2889
2811
-
Ile
GAT
[ENA]
¡û
>w024241
AAYM01000003
Mycoplasmatota
Ureaplasma parvum serovar 3 [AAYM]
38617
38695
+
Ile
GAT
[ENA]
¡û
>WENV180225679
OBBO01000009
[OBBO] human gut metagenome; Infant 2 DOL 5 gut
135419
135343
-
Ile
GAT
[ENA]
¢þ
>WENV180822737
ODJV01000040
[ODJV] human metagenome; G_DNA_Posterior fornix
154
78
-
Ile
GAT
[ENA]
¢þ
>W08002239
ABER01000002
Mycoplasmatota
Ureaplasma parvum serovar 14 str. ATCC 33697 [ABER]
62722
62798
+
Ile
GAT
[ENA]
¡û
>W08002248
ABES01000001
Mycoplasmatota
Ureaplasma parvum serovar 1 str. ATCC 27813 [ABES]
509499
509575
+
Ile
GAT
[ENA]
¡û
>W08002293
ABET01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 10 [ABET]
252455
252382
-
Ile
GAT
[ENA]
¡û
>W08002319
ABEV01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 13 str. ATCC 33698 [ABEV]
150943
150870
-
Ile
GAT
[ENA]
¡û
>W08002823
ABFL01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 2 [ABFL]
241745
241672
-
Ile
GAT
[ENA]
¡û
>W141142568
AWQU01000078
Mycoplasmatota
Malacoplasma iowae DK-CPA [AWQU]
18359
18435
+
Ile
GAT
[ENA]
¡û
>C08011084
CP000942
Mycoplasmatota
Ureaplasma parvum serovar 3 str. ATCC 27815 [CP000942]
188074
188150
+
Ile
GAT
[Ensembl]
¡û
>W141455562
JFDP01000077
Mycoplasmatota
Ureaplasma diversum NCTC 246 [JFDP]
248
172
-
Ile
GAT
[ENA]
¡û
>WENV170784976
MDSO01136423
[MDSO] gut metagenome; Stomach gut content
108
32
-
Ile
GAT
[ENA]
¢þ
>WENV170785019
MDSO01189634
[MDSO] gut metagenome; Stomach gut content
499
423
-
Ile
GAT
[ENA]
¢þ
>C191003503
AP018561
Mycoplasmatota
Ureaplasma parvum serovar 3 OMC-P162 [AP018561]
27517
27593
+
Ile
GAT
-
¡û
>C191218154
LR214962
Mycoplasmatota
Mycoplasmopsis fermentans NCTC10117 [LR214955, LR214962]
307786
307862
+
Ile
GAT
-
¡û
>C191218431
LR215023
Mycoplasmatota
Malacoplasma iowae NCTC10185 [LR215023]
193512
193436
-
Ile
GAT
-
¡û
>W141779615
JONZ01000005
Mycoplasmatota
Ureaplasma canigenitalium ATCC 51252 [JONZ]
116831
116907
+
Ile
GAT
[ENA]
¡û
>C09110769
CP001184
Mycoplasmatota
Ureaplasma urealyticum serovar 10 str. ATCC 33699 [CP001184]
192140
192216
+
Ile
GAT
[Ensembl]
¡û
>W1911824674
QZWO01000185
Mycoplasmatota
Ureaplasma urealyticum 445 [QZWO]
482
558
+
Ile
GAT
[ENA]
¡û
>W1810735656
QOKT01000006
Mycoplasmatota
Ureaplasma urealyticum 1000 [QOKT]
18739
18815
+
Ile
GAT
[ENA]
¡û
>W1810735682
QOKU01000035
Mycoplasmatota
Ureaplasma urealyticum 1051 [QOKU]
318
394
+
Ile
GAT
[ENA]
¡û
>W1810757232
QPHI01000026
Mycoplasmatota
Ureaplasma parvum 445a [QPHI]
1365
1441
+
Ile
GAT
[ENA]
¡û
>W1810757258
QPHJ01000028
Mycoplasmatota
Ureaplasma urealyticum 1000a [QPHJ]
6172
6248
+
Ile
GAT
[ENA]
¡û
>W1810757284
QPHK01000044
Mycoplasmatota
Ureaplasma parvum 1051a [QPHK]
299
375
+
Ile
GAT
[ENA]
¡û
>C151002393
AP014584
Mycoplasmatota
Ureaplasma parvum serovar 3 SV3F4 [AP014584]
717913
717837
-
Ile
GAT
[Ensembl]
¡û
>W11178985
AGFP01000043
Mycoplasmatota
Malacoplasma iowae 695 [AGFP]
18468
18544
+
Ile
GAT
[ENA]
¡û
>C161022167
CP009770
Mycoplasmatota
Ureaplasma diversum ATCC 49782 [CP009770]
827460
827384
-
Ile
GAT
-
¡û
>W121060666
AJFX01000010
Mycoplasmatota
Ureaplasma urealyticum 2033 [AJFX]
42923
42847
-
Ile
GAT
[ENA]
¡û
>W121060697
AJFY01000010
Mycoplasmatota
Ureaplasma urealyticum 2608 [AJFY]
38330
38406
+
Ile
GAT
[ENA]
¡û
>W121060700
AJFZ01000004
Mycoplasmatota
Ureaplasma urealyticum 4155 [AJFZ]
149941
149865
-
Ile
GAT
[ENA]
¡û
>W121060727
AJGA01000007
Mycoplasmatota
Ureaplasma urealyticum 4318 [AJGA]
150224
150148
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK