This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.150557 (17 seq.)
>W1710926366
LOEE01000063
Bacillota
Thermotalea metallivorans [LOEE]
1706
1782
+
Arg
ACG
[ENA]
¡û
>C171059888
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
761181
761105
-
Arg
ACG
-
¡û
>C171064260
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2591416
2591492
+
Arg
ACG
-
¡û
>C171064287
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2619495
2619571
+
Arg
ACG
-
¡û
>C171109207
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1397242
1397318
+
Arg
ACG
-
¡û
>C171109234
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1425320
1425396
+
Arg
ACG
-
¡û
>w017037
AAQV01000054
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
6656
6583
-
Arg
ACG
[ENA]
¡û
>C08000791
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
1923452
1923379
-
Arg
ACG
[Ensembl]
¡û
>WENV183692019
ORMF011851876
[ORMF] groundwater metagenome; groundwater
3882
3956
+
Arg
ACG
[ENA]
¢þ
>WENV183746254
POVV01019005
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
675
599
-
Arg
ACG
[ENA]
¢þ
>W141561140
JHYF01000002
Bacillota
Alkaliphilus transvaalensis ATCC 700919 [JHYF]
253
329
+
Arg
ACG
[ENA]
¡û
>C151057239
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1167963
1168039
+
Arg
ACG
[Ensembl]
¡û
>C151057254
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1179432
1179508
+
Arg
ACG
[Ensembl]
¡û
>W1511527555
JYHU01000040
Bacillota
Clostridium aceticum DSM 1496 [JYHU]
77
1
-
Arg
ACG
[ENA]
¡û
>W1610783859
LOEE01000063
Bacillota
Thermotalea metallivorans [LOEE]
1706
1782
+
Arg
ACG
[ENA]
¡û
>W1710531836
FNPV01000005
Bacillota
Tindallia californiensis [FNPV]
540
616
+
Arg
ACG
[ENA]
¡û
>W1710563814
FOQA01000001
Bacillota
Tindallia magadiensis [FOQA]
540
616
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK