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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.150559 (62 seq.)
>W131249937
CAUE01000062
Gammaproteobacteria
Coxiella burnetii Z3055 [CAUE]
17313
17237
-
Arg
TCG
[ENA]
¡û
>W131251124
CAVF010000017
Gammaproteobacteria
Coxiella burnetii Cb175_Guyana [CAVF]
58670
58746
+
Arg
TCG
[ENA]
¡û
>C171071277
CP018005
Gammaproteobacteria
Coxiella burnetii RSA439 [CP018005]
1084629
1084705
+
Arg
TCG
-
¡û
>C171073872
CP018150
Gammaproteobacteria
Coxiella burnetii 'MSU Goat Q177' [CP018150]
983533
983609
+
Arg
TCG
-
¡û
>C171110907
CP020616
Gammaproteobacteria
Coxiella burnetii RSA 439 [CP020616]
1084620
1084696
+
Arg
TCG
-
¡û
>C171127853
HG825990
Gammaproteobacteria
Coxiella burnetii Cb175_Guyana [HG825990]
1110900
1110976
+
Arg
TCG
-
¡û
>C005225
AE016828
Gammaproteobacteria
Coxiella burnetii RSA 493 [AE016828]
1110680
1110756
+
Arg
TCG
[Ensembl]
¡û
>w024172
AAYJ01000042
Gammaproteobacteria
Coxiella burnetii RSA 334 [AAYJ]
6749
6825
+
Arg
TCG
[ENA]
¡û
>w020091
AAUP01000037
Gammaproteobacteria
Coxiella burnetii 'MSU Goat Q177' [AAUP]
6480
6556
+
Arg
TCG
[ENA]
¡û
>w016779
AAQO01000037
Gammaproteobacteria
Coxiella burnetii RSA 331 [AAQO]
6993
7069
+
Arg
TCG
[ENA]
¡û
>w016630
AAQI01000003
Gammaproteobacteria
Coxiella burnetii Dugway 7E9-12 [AAQI] Dugway 7E9-12 [AAQI]
11827
11754
-
Arg
TCG
[ENA]
¡û
>W141027247
AKYP01000161
Gammaproteobacteria
Coxiella burnetii cb109 [AKYP]
4084
4008
-
Arg
TCG
[ENA]
¡û
>C08003006
CP000733
Gammaproteobacteria
Coxiella burnetii Dugway 5J108-111 [CP000733]
1243501
1243577
+
Arg
TCG
[Ensembl]
¡û
>C08003051
CP000890
Gammaproteobacteria
Coxiella burnetii RSA 331 [CP000890]
1193158
1193234
+
Arg
TCG
[Ensembl]
¡û
>W141254778
CBTH010000004
Gammaproteobacteria
Coxiella burnetii Cb185 [CBTH]
146832
146908
+
Arg
TCG
[ENA]
¡û
>W141260671
CCAH010000016
Gammaproteobacteria
Coxiella burnetii [CCAH]
13550
13626
+
Arg
TCG
[ENA]
¡û
>W141260713
CCAI010000018
Gammaproteobacteria
Coxiella burnetii [CCAI]
13540
13616
+
Arg
TCG
[ENA]
¡û
>W141260755
CCAJ010000034
Gammaproteobacteria
Coxiella burnetii [CCAJ]
23770
23846
+
Arg
TCG
[ENA]
¡û
>W141260790
CCAK010000080
Gammaproteobacteria
Coxiella burnetii [CCAK]
11706
11782
+
Arg
TCG
[ENA]
¡û
>W141260848
CCAL010000016
Gammaproteobacteria
Coxiella burnetii [CCAL]
13548
13624
+
Arg
TCG
[ENA]
¡û
>W141260890
CCAM010000047
Gammaproteobacteria
Coxiella burnetii [CCAM]
23999
24075
+
Arg
TCG
[ENA]
¡û
>W141267601
CCNR01000037
Gammaproteobacteria
Coxiella burnetii RSA 493 [CCNR]
8960
8884
-
Arg
TCG
[ENA]
¡û
>WENV170002578
AGTN01073599
[AGTN] bioreactor metagenome; poplar biomass
368
292
-
Arg
TCG
[ENA]
¢þ
>C191091549
CP032542
Gammaproteobacteria
Coxiella burnetii 2014-PE-15890 [CP032542]
1761691
1761765
+
Arg
TCG
-
¡û
>C191134928
CP035112
Gammaproteobacteria
Coxiella burnetii nine mile phase II [CP035112]
1369294
1369370
+
Arg
TCG
-
¡û
>C191174664
CP040059
Gammaproteobacteria
Coxiella burnetii RSA439 [CP040059]
1084490
1084566
+
Arg
TCG
-
¡û
>W141810540
JPVV01000028
Gammaproteobacteria
Coxiella burnetii [JPVV]
24404
24480
+
Arg
TCG
[ENA]
¡û
>C09103008
CP001019
Gammaproteobacteria
Coxiella burnetii CbuG_Q212 [CP001019]
818417
818341
-
Arg
TCG
[Ensembl]
¡û
>C09103024
CP001020
Gammaproteobacteria
Coxiella burnetii CbuK_Q154 [CP001020]
983617
983693
+
Arg
TCG
[Ensembl]
¡û
>W1911118964
NOLM01000019
Gammaproteobacteria
Coxiella burnetii Dugway 7E65-68 [NOLM]
62733
62809
+
Arg
TCG
[ENA]
¡û
>W1911119006
NOLN01000018
Gammaproteobacteria
Coxiella burnetii Dugway 7D77-80 [NOLN]
62814
62890
+
Arg
TCG
[ENA]
¡û
>W1911119055
NOLO01000012
Gammaproteobacteria
Coxiella burnetii Turkey RSA315 [NOLO]
58577
58653
+
Arg
TCG
[ENA]
¡û
>W1911119076
NOLP01000024
Gammaproteobacteria
Coxiella burnetii Ko Q229 [NOLP]
18183
18107
-
Arg
TCG
[ENA]
¡û
>W1911119139
NOLQ01000012
Gammaproteobacteria
Coxiella burnetii Dyer RSA345 [NOLQ]
58577
58653
+
Arg
TCG
[ENA]
¡û
>W1911119181
NOLR01000015
Gammaproteobacteria
Coxiella burnetii Idaho Goat Q195 [NOLR]
58578
58654
+
Arg
TCG
[ENA]
¡û
>W1911119223
NOLS01000012
Gammaproteobacteria
Coxiella burnetii Ohio 314 RSA338 [NOLS]
58577
58653
+
Arg
TCG
[ENA]
¡û
>W1911119265
NOLT01000012
Gammaproteobacteria
Coxiella burnetii Ohio 314 RSA270 [NOLT]
58577
58653
+
Arg
TCG
[ENA]
¡û
>W1911119307
NOLU01000013
Gammaproteobacteria
Coxiella burnetii California 16 RSA350 [NOLU]
58577
58653
+
Arg
TCG
[ENA]
¡û
>W1911119349
NOLV01000012
Gammaproteobacteria
Coxiella burnetii California 33 RSA329 [NOLV]
58577
58653
+
Arg
TCG
[ENA]
¡û
>W1911136648
NOVF01000012
Gammaproteobacteria
Coxiella burnetii California 16 RSA350 clone 2 [NOVF]
58577
58653
+
Arg
TCG
[ENA]
¡û
>W1911136690
NOVG01000013
Gammaproteobacteria
Coxiella burnetii Nine Mile RSA514 [NOVG]
58505
58581
+
Arg
TCG
[ENA]
¡û
>W1911136732
NOVH01000013
Gammaproteobacteria
Coxiella burnetii Nine Mile RSA363 [NOVH]
58577
58653
+
Arg
TCG
[ENA]
¡û
>W1911136774
NOVI01000027
Gammaproteobacteria
Coxiella burnetii M44 RSA461 [NOVI]
23882
23956
+
Arg
TCG
[ENA]
¡û
>W1911136816
NOVJ01000012
Gammaproteobacteria
Coxiella burnetii Australia RSA425 [NOVJ]
58577
58653
+
Arg
TCG
[ENA]
¡û
>W1911136858
NOVK01000012
Gammaproteobacteria
Coxiella burnetii Australia RSA297 [NOVK]
58577
58653
+
Arg
TCG
[ENA]
¡û
>W1911244434
NSHJ01000015
Gammaproteobacteria
Coxiella-like endosymbiont [NSHJ]
1205
1131
-
Arg
TCG
[ENA]
¡û
>W1810059848
PDLP01000015
Gammaproteobacteria
Coxiella burnetii Leningrad-2 [PDLP]
18721
18645
-
Arg
TCG
[ENA]
¡û
>W1810235698
PPFM01000020
Gammaproteobacteria
Coxiella burnetii Q559 [PPFM]
18155
18079
-
Arg
TCG
[ENA]
¡û
>W1810235739
PPFN01000021
Gammaproteobacteria
Coxiella burnetii Q556 [PPFN]
18155
18079
-
Arg
TCG
[ENA]
¡û
>W1810235781
PPFO01000020
Gammaproteobacteria
Coxiella burnetii Q545 [PPFO]
13541
13617
+
Arg
TCG
[ENA]
¡û
>W1810235797
PPFP01000010
Gammaproteobacteria
Coxiella burnetii Q540 [PPFP]
23992
24066
+
Arg
TCG
[ENA]
¡û
>W1810235865
PPFQ01000020
Gammaproteobacteria
Coxiella burnetii Q532 [PPFQ]
13549
13625
+
Arg
TCG
[ENA]
¡û
>W1810235901
PPFR01000012
Gammaproteobacteria
Coxiella burnetii Cb3506 [PPFR]
34100
34176
+
Arg
TCG
[ENA]
¡û
>C151077719
CP011126
Gammaproteobacteria
Candidatus Coxiella mudrowiae CRt [CP011126]
996860
996784
-
Arg
TCG
[Ensembl]
¡û
>C151102379
LK937696
Gammaproteobacteria
Coxiella burnetii Z3055 [LK937696]
1110859
1110935
+
Arg
TCG
-
¡û
>W1510060745
CCXO01000003
Gammaproteobacteria
Coxiella burnetii CbuK_Q154 Cb196_Saudi_Arabia [CCXO]
421876
421952
+
Arg
TCG
[ENA]
¡û
>W1510061121
CCYB01000037
Gammaproteobacteria
Coxiella burnetii RSA 493 [CCYB]
8960
8884
-
Arg
TCG
[ENA]
¡û
>W1510064633
CDBG01000001
Gammaproteobacteria
Coxiella burnetii RSA 493 Cb171_QLYMPHOMA [CDBG]
1185243
1185319
+
Arg
TCG
[ENA]
¡û
>W1511555127
JZWL01000001
Gammaproteobacteria
Coxiella burnetii NL-Limburg [JZWL]
611612
611536
-
Arg
TCG
[ENA]
¡û
>C161017344
CP007555
Gammaproteobacteria
Coxiella burnetii str. Namibia [CP007555]
979396
979472
+
Arg
TCG
[Ensembl]
¡û
>C161059055
CP013667
Gammaproteobacteria
Coxiella burnetii 3262 [CP013667]
1761818
1761894
+
Arg
TCG
-
¡û
>C161071920
CP014354
Gammaproteobacteria
Coxiella burnetii 3345937 [CP014354]
1661711
1661787
+
Arg
TCG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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