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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.150566 (51 seq.)
>W1711662208
MQUF01000016
Thermodesulfobacteriota
Desulfobulbaceae bacterium DB1 [MQUF]
121346
121422
+
Pro
GGG
[ENA]
¡û
>W131099219
AOSV01000030
Thermodesulfobacteriota
Desulfocurvibacter africanus PCS [AOSV]
217276
217200
-
Pro
GGG
[ENA]
¡û
>W131221706
AUAR01000006
Thermodesulfobacteriota
Desulfomicrobium escambiense DSM 10707 [AUAR]
207938
208014
+
Pro
GGG
[ENA]
¡û
>W131236028
AULZ01000001
Thermodesulfobacteriota
Desulfocurvibacter africanus DSM 2603 [AULZ]
153574
153498
-
Pro
GGG
[ENA]
¡û
>W131236098
AUMA01000006
Thermodesulfobacteriota
Desulfovibrio aminophilus DSM 12254 [AUMA]
160370
160294
-
Pro
GGG
[ENA]
¡û
>w016484
AAQF01000268
Unclassified
delta proteobacterium MLMS-1 [AAQF]
4649
4571
-
Pro
GGG
[ENA]
¡û
>w016473
AAQF01000155
Unclassified
delta proteobacterium MLMS-1 [AAQF]
7067
6989
-
Pro
GGG
[ENA]
¡û
>w016426
AAQF01000026
Unclassified
delta proteobacterium MLMS-1 [AAQF]
18138
18060
-
Pro
GGG
[ENA]
¡û
>WENV180296453
OBJA01000564
[OBJA] soil metagenome; sediment, water from around vicinity
267
191
-
Pro
GGG
[ENA]
¢þ
>WENV180332454
OBLD01011853
[OBLD] metagenome; water
148
224
+
Pro
GGG
[ENA]
¢þ
>WENV180346026
OBLN01020359
[OBLN] sediment metagenome; sediment
998
922
-
Pro
GGG
[ENA]
¢þ
>WENV181119302
OEFH01156076
[OEFH] human metagenome; G_DNA_Stool
166
242
+
Pro
GGG
[ENA]
¢þ
>WENV181250336
OFFN01003938
[OFFN] mouse gut metagenome; faeces
2484
2560
+
Pro
GGG
[ENA]
¢þ
>WENV181258351
OFFV01000130
[OFFV] mouse gut metagenome; faeces
63476
63400
-
Pro
GGG
[ENA]
¢þ
>WENV181281983
OFGP01001385
[OFGP] mouse gut metagenome; faeces
2507
2583
+
Pro
GGG
[ENA]
¢þ
>WENV181283185
OFGQ01001212
[OFGQ] mouse gut metagenome; faeces
2476
2552
+
Pro
GGG
[ENA]
¢þ
>WENV181300426
OFHN01001321
[OFHN] mouse gut metagenome; faeces
15434
15358
-
Pro
GGG
[ENA]
¢þ
>WENV181404296
OGBZ01012236
[OGBZ] sediment metagenome; hot spring sediment
265
189
-
Pro
GGG
[ENA]
¢þ
>WENV182514856
OIWM01038261
[OIWM] human gut metagenome; faeces
1096
1172
+
Pro
GGG
[ENA]
¢þ
>WENV183512557
OMKS01000733
[OMKS] sediment metagenome; hot spring sediment
178
102
-
Pro
GGG
[ENA]
¢þ
>WENV183709585
PDWI01030524
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3592
3668
+
Pro
GGG
[ENA]
¢þ
>WENV183718503
PDWJ01004469
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
6930
6854
-
Pro
GGG
[ENA]
¢þ
>WENV183721789
PDWJ01086587
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
438
362
-
Pro
GGG
[ENA]
¢þ
>WENV183722364
PDWJ01122581
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
307
383
+
Pro
GGG
[ENA]
¢þ
>WENV170019017
BBPD01003079
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
8575
8651
+
Pro
GGG
[ENA]
¢þ
>WENV170020279
BBPE01005295
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
2699
2623
-
Pro
GGG
[ENA]
¢þ
>WENV170640625
JFJP01023588
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
11878
11802
-
Pro
GGG
[ENA]
¢þ
>WENV170645349
JMSV01000534
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
4167
4091
-
Pro
GGG
[ENA]
¢þ
>WENV170645365
JMSV01000892
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
2234
2158
-
Pro
GGG
[ENA]
¢þ
>WENV170645407
JMSV01003163
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
901
977
+
Pro
GGG
[ENA]
¢þ
>WENV170645419
JMSV01004214
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
472
548
+
Pro
GGG
[ENA]
¢þ
>WENV170657943
JTFP01036380
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
5090
5166
+
Pro
GGG
[ENA]
¢þ
>WENV170689173
LFRM01281443
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
622
546
-
Pro
GGG
[ENA]
¢þ
>WENV170702797
LKMJ01004158
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1576
1500
-
Thr
GGT
[ENA]
¢þ
>W09108821
ABTP01000004
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [ABTP]
85318
85242
-
Pro
GGG
[ENA]
¡û
>W1911738001
QTZO01000003
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
186323
186399
+
Pro
GGG
[ENA]
¡û
>W10106360
ACYL01000006
Thermodesulfobacteriota
Desulfurivibrio alkaliphilus AHT2 [ACYL]
30029
30105
+
Pro
GGG
[ENA]
¡û
>C10104887
CP001940
Thermodesulfobacteriota
Desulfurivibrio alkaliphilus AHT 2 [CP001940]
1462453
1462377
-
Pro
GGG
[Ensembl]
¡û
>C10104999
CP001629
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [CP001629]
43993
43917
-
Pro
GGG
[Ensembl]
¡û
>W11108683
ACYL01000006
Thermodesulfobacteriota
Desulfurivibrio alkaliphilus AHT2 [ACYL]
30029
30105
+
Pro
GGG
[ENA]
¡û
>W1511534110
JYNP01000028
Thermodesulfobacteriota
Desulfonatronovibrio magnus AHT22 [JYNP]
23775
23851
+
Pro
GGG
[ENA]
¡û
>W11149102
AEUJ01000001
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
443328
443252
-
Pro
GGG
[ENA]
¡û
>W11162677
AFHE01000001
Thermodesulfobacteriota
Desulfocurvibacter africanus str. Walvis Bay [AFHE]
485353
485277
-
Pro
GGG
[ENA]
¡û
>C121009067
CP003221
Thermodesulfobacteriota
Desulfocurvibacter africanus subsp. africanus str. Walvis Bay [CP003221]
485353
485277
-
Pro
GGG
[Ensembl]
¡û
>C161068254
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
2729964
2730040
+
Pro
GGG
[Ensembl]
¡û
>C161069070
CP014230
Thermodesulfobacteriota
Desulfomicrobium orale DSM 12838 [CP014230]
13949
13873
-
Pro
GGG
[Ensembl]
¡û
>W1710566382
FORX01000026
Thermodesulfobacteriota
Desulfomicrobium apsheronum [FORX]
26455
26531
+
Pro
GGG
[ENA]
¡û
>W1710568349
FOTO01000001
Thermodesulfobacteriota
Desulfomicrobium norvegicum [FOTO]
816365
816441
+
Pro
GGG
[ENA]
¡û
>W1710602222
FUYA01000018
Thermodesulfobacteriota
Desulfobaculum bizertense DSM 18034 [FUYA]
1104
1180
+
Pro
GGG
[ENA]
¡û
>W1710607114
FWZU01000001
Thermodesulfobacteriota
Desulfovibrio gilichinskyi K3S [FWZU]
963415
963491
+
Pro
GGG
[ENA]
¡û
>W1710607145
FWZU01000003
Thermodesulfobacteriota
Desulfovibrio gilichinskyi K3S [FWZU]
266760
266684
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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