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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.150641 (48 seq.)
>W131108925
APGP01000029
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
816
892
+
Val
CAC
[ENA]
¡û
>W131108961
APGP01000085
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
64709
64633
-
Val
GAC
[ENA]
¡û
>W131218306
ATXO01000010
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
20355
20279
-
Val
GAC
[ENA]
¡û
>W131218333
ATXO01000028
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
2427
2503
+
Val
CAC
[ENA]
¡û
>C006925
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
1912776
1912700
-
Val
GAC
[Ensembl]
¡û
>WENV181226058
OFDK01000011
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
81409
81485
+
Val
GAC
[ENA]
¢þ
>WENV181226172
OFDK01000160
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
8770
8846
+
Val
GAC
[ENA]
¢þ
>WENV181226281
OFDK01000590
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
2305
2229
-
Val
CAC
[ENA]
¢þ
>WENV181285395
OFGS01000119
[OFGS] hot springs metagenome; Water and soil
17663
17587
-
Val
GAC
[ENA]
¢þ
>WENV181408938
OGCH01025423
[OGCH] hot springs metagenome; hot springs
802
726
-
Val
GAC
[ENA]
¢þ
>W09104541
AALW01000018
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [AALW]
5258
5334
+
Val
GAC
[ENA]
¡û
>W09113807
ABYZ01000002
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
64244
64168
-
Val
GAC
[ENA]
¡û
>C191131111
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
1527952
1528028
+
Val
GAC
-
¡û
>C09100830
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
1773761
1773837
+
Val
GAC
[Ensembl]
¡û
>W1911155333
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
1941523
1941599
+
Val
GAC
[ENA]
¡û
>W1911244040
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
2527855
2527779
-
Val
GAC
[ENA]
¡û
>W1911244071
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
1478678
1478754
+
Val
GAC
[ENA]
¡û
>W1911244121
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
2031644
2031720
+
Val
GAC
[ENA]
¡û
>W1911244198
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
1088117
1088041
-
Val
GAC
[ENA]
¡û
>W1911244218
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
1942598
1942674
+
Val
GAC
[ENA]
¡û
>W1911572561
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
1008024
1007948
-
Val
GAC
[ENA]
¡û
>W1911572585
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
2735797
2735873
+
Val
GAC
[ENA]
¡û
>W1911572656
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
1103357
1103281
-
Val
GAC
[ENA]
¡û
>W1810052275
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
557404
557328
-
Val
GAC
[ENA]
¡û
>W1810071914
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
1043767
1043691
-
Val
GAC
[ENA]
¡û
>W1810071951
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
2076234
2076158
-
Val
GAC
[ENA]
¡û
>W1810071986
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
2664072
2664148
+
Val
GAC
[ENA]
¡û
>W1810368006
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
2527115
2527191
+
Val
GAC
[ENA]
¡û
>C10103664
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
1020438
1020362
-
Val
GAC
[Ensembl]
¡û
>C11105229
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
1085173
1085097
-
Val
GAC
[Ensembl]
¡û
>C11105382
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
1767504
1767580
+
Val
GAC
[Ensembl]
¡û
>C11105454
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
1192721
1192645
-
Val
GAC
[Ensembl]
¡û
>C11105468
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
1170615
1170691
+
Val
GAC
[Ensembl]
¡û
>C11105852
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
1507452
1507528
+
Val
GAC
[Ensembl]
¡û
>W11139364
AEKB01000001
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
294036
294112
+
Val
GAC
[ENA]
¡û
>W11139435
AEKC01000027
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
18071
17995
-
Val
GAC
[ENA]
¡û
>W11139479
AEKD01000041
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
17946
17870
-
Val
GAC
[ENA]
¡û
>W1511563950
LACM01000001
Bacillota
Caldicellulosiruptor danielii Wai35.B1 [LACM]
1938410
1938486
+
Val
GAC
[ENA]
¡û
>W1511564012
LACN01000006
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
70320
70244
-
Val
GAC
[ENA]
¡û
>W1511564057
LACO01000001
Bacillota
Caldicellulosiruptor morganii Rt8.B8 [LACO]
1659997
1660073
+
Val
GAC
[ENA]
¡û
>W1710603762
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
1529971
1529895
-
Val
GAC
[ENA]
¡û
>W1710603804
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
927310
927386
+
Val
GAC
[ENA]
¡û
>W1710603901
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
1875763
1875839
+
Val
GAC
[ENA]
¡û
>W1710605062
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
939266
939342
+
Val
GAC
[ENA]
¡û
>W1710609684
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
1448614
1448538
-
Val
GAC
[ENA]
¡û
>W1710609730
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
848148
848072
-
Val
GAC
[ENA]
¡û
>W1710609753
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
2045698
2045774
+
Val
GAC
[ENA]
¡û
>W1710609798
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
2038241
2038317
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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